BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50230.1
Length=1818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495081 jgi|Araly1|495081|fgenesh2_kg.8__897__AT5G50230.1 2676 0.0
> Ahg495081 jgi|Araly1|495081|fgenesh2_kg.8__897__AT5G50230.1
Length=1726
Score = 2676 bits (1449), Expect = 0.0
Identities = 1652/1747 (95%), Gaps = 25/1747 (1%)
Strand=Plus/Plus
Query 1 CGACTCTTTTTGATCTGAATCGAGAGATGGT-ACAGGAGGAGAAAGCTATGGAAGCAATA 59
|||||| |||||||||| |||||||||| || |||||||||||||||||||||||| |||
Sbjct 1 CGACTCCTTTTGATCTG-ATCGAGAGAT-GTCACAGGAGGAGAAAGCTATGGAAGCCATA 58
Query 60 AATGACGCTTTGAGAGCTTTGCGGAAGCGTCATCTTCTGGAAGAAGGAGCTCATGCTCCT 119
|| ||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 59 AAGGACGCTTTGAGAGCTTTGCGGAAGCGTCATCTTTTAGAGGAAGGAGCTCATGCTCCT 118
Query 120 GCGATTTCTGCTCTCTCTAAG-CCTTTAATCTCTCAGGGTTCAGAATGGAAGGAGAAAAC 178
||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||||
Sbjct 119 GCGATTTCTGCTCTCTC-GAGACCTATAATCTCTCAGGGGTCAGAATGGAAGGAGAAAAC 177
Query 179 AGAAAAGCTGGAAACAGAGTTACAGCAATGTTACAAAGCTCAATCTCGACTATCTGAACA 238
|||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||
Sbjct 178 AGAAAAACTGGAAACAGAGTTACAACAATGTTACAAAGCTCAATCCCGACTGTCTGAGCA 237
Query 239 ACTGGTGATAGAAGTAGCTGAATCCAGAACTTCAAAGGCTATTTTACAAGAGAAGGAGTT 298
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 238 ACTTGTGATAGAAGTAGCTGAATCCAGAACTTCAAAGGCTATTTTACAAGAAAAGGAGTT 297
Query 299 GTTAATTAATGACTTGCAGAAGGAATTAACACAAAGAAGGGAGGATTGTACACGATTACA 358
|||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||
Sbjct 298 GTTAATTAATGACTTGCAGAAGGAATTAACCCAAAGAAGGGAGGAGTGTACACAAATACA 357
Query 359 AGAAGAGTTAGAGGAAAAGACCAAGACGGTGGATGTACTTATTGCTGAAAACCTGGAAAT 418
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 358 AGAAGAGTTAGAGGAAAAGACCAAGACGGTGGATGTTCTTATTGCTGAAAACCAGGAAAT 417
Query 419 ACGGTCTCAGTTGGAGGAGATGACAAGTAGAGTGCAAAAAGCAGAGACTGAGAATAAAAT 478
||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 418 CCGGTCTCAGCTGGAAGAGATGACAAGTAGAGTGCAAAAAGCAGAGTCTGAGAATAAAAT 477
Query 479 GTTAATTGATCGGTGGATGTTGCAGAAGATGCAGGATGCAGAACGTCTTAATGAGGCAAA 538
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 478 GTTAATTGATCGGTGGATGTTACAGAAGATGCAGGATGCAGAACGTCTTAACGAGGCAAA 537
Query 539 TGATCTCTATGAAGAAATGCTAGCTAAGCTGAAGGCAAATGGTTTGGAAACTCTTGCTCG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGATCTCTATGAAGAAATGCTAGCTAAGCTGAAGGCAAATGGTTTGGAAACTCTTGCTCG 597
Query 599 GCAGCAAGTTGATGGTATTGTCCGCCGCAATGAAGATGGAACCGATCACTTTGTTGAGTC 658
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 598 GCAGCAAGTTGATGGCATTGTCCGCCGAAATGAAGATGGAACCGATCACTTTGTTGAATC 657
Query 659 AACCATTCCGTCAACATGTGCGAATCGTATCCATGCTCATGAAGGTGGCTGTGGTTCAAT 718
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 658 AACCATTCCGTCAACATGTGGGCACCGTATCCATGCTCATGAAGGTGGCTGTGGTTCAAT 717
Query 719 AGTCTTTGAATACAACTCTGGTACTCTGTTTACTGGTGGGCAAGATCGAGCAGTAAAAAT 778
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 718 AATCTTTGAATACAACTCTGGTACTCTGTTTACTGGTGGGCAAGACCGAGCAGTAAAAAT 777
Query 779 GTGGGACACCAATAGCGGAACTTTAATCAAAAGCTTATACGGTTCCCTTGGGAATATACT 838
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTGGGACACCAATAGCGGGGCTTTAATCAAAAGCTTATACGGTTCCCTTGGGAATATACT 837
Query 839 TGATATGGCCGTAACCCACGACAATAAATCCGTGATCGCAGCAACCAGCTCAAATAATTT 898
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 838 TGATATGGCCGTAACCCACGACAATAAATCTGTGATCGCAGCAACCAGCTCAAACAATTT 897
Query 899 GTTTGTATGGGATGTTAGCTCGGGTAGGGTACGCCATACACTCACAGGCCACACGGATAA 958
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 898 GTTTGTGTGGGATGTAAGCTCGGGTAGGGTACGCCATACACTCACAGGCCACACCGATAA 957
Query 959 GGTTTGTGCTGTGGATGTGAGCAAATTCTCTAGCCGACATGTTGTCAGTGCAGCATATGA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GGTTTGTGCTGTGGATGTGAGCAAATTCTCTAGCCGACATGTTGTCAGTGCAGCATATGA 1017
Query 1019 CCGTACCATAAAACTTTGGGATTTGCATAAAGGTTACTGCACTAACACAGTACTCTTTAC 1078
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1018 CCGTACCATAAAACTTTGGGATTTACATAAAGGTTACTGCACTAACACAGTACTCTTTAC 1077
Query 1079 CAGCAACTGCAATGCAATCTGCCTCAGCATAGATGGGCTTACGGTATTCTCAGGCCACAT 1138
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CAGTAACTGCAACGCAATCTGCCTCAGCATAGATGGGCTTACGGTATTCTCAGGCCACAT 1137
Query 1139 GGATGGGAATCTTAGGTTATGGGATATTCAAACTGGGAAACTTCTGTCCGAAGTAGCTGG 1198
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1138 GGATGGAAATCTTAGGTTATGGGATATTCAAAGTGGGAAACTTCTGTCCGAAGTAGCTGG 1197
Query 1199 ACATTCTTCTGCTGTGACCTCAGTATCATTGTCCCGGAACGGAAATAGGATCTTGACGAG 1258
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ACATTCTTCTGCCGTGACCTCAGTATCATTGTCCCGGAACGGAAATAGGATCTTGACGAG 1257
Query 1259 CGGGAGAGACAACGTGCATAATGTATTTGATACCCGGACTTTGGAAATATGTGGGACACT 1318
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1258 CGGAAGAGACAACGTGCATAATGTATTTGATACGCGGACTTTGGAAATATGTGGGACATT 1317
Query 1319 GAGAGCATCGGGGAACAGATTAGCATCGAATTGGAGCCGGTCATGCATAAGTCCAGATGA 1378
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1318 GAGAGCATCAGGGAACAGATTGGCATCGAATTGGAGCCGGTCATGTATAAGTCCAGATGA 1377
Query 1379 TGATTATGTGGCTGCGGGATCTGCAGATGGTTCGGTTCATGTATGGTCGCTATCTAAAGG 1438
|||||| |||||||||||||||||||||||| | |||||||||||||| |||||||||||
Sbjct 1378 TGATTACGTGGCTGCGGGATCTGCAGATGGTACAGTTCATGTATGGTCACTATCTAAAGG 1437
Query 1439 CAATATAGTGAGCATTCTCAAGGAGCAAACATCTCCTATACTGTGTTGTTCTTGGAGTGG 1498
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1438 AAATATAGTGAGCATTCTCAAGGAGCAAACATCTCCTATACTGTGTTGTTCTTGGAGCGG 1497
Query 1499 GATCGGGAAACCATTGGCATCGGCTGATAAAAACGGGTACGTTTGTACGTGGACATGATT 1558
|||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1498 GATCGGGAAACCATTGGCGTCGGCTGATAAAAACGGGTACATTTGCACGTGGACATGATT 1557
Query 1559 ATGAAACAGGTTTAA-CACTGGTTTGATAACTCAATGCGTCGTATGTTTCCTCAAAAGGA 1617
|| |||||| ||||| ||||||||||||||||| | ||| || ||| |||
Sbjct 1558 ATAAAACAG-TTTAAACACTGGTTTGATAACTC---G------ATG---CC--AAATGGA 1602
Query 1618 TGGGCGTGTGTACTCTTTGTCTTTTGGTGTTCTTTCTCTCAAAGAACTTGCATTTGATGA 1677
||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1603 TGGGCGTGTATACTCTT-GTCTTTTGGTGTTCTTTCCCTCAAAGAACTTGCATTTGATGA 1661
Query 1678 CACGTGTTTCTTACCGTATATAATTGTTTTCTAAGGT-CATTTGAGTGTATTGCTCAAtt 1736
| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1662 AA--TGTTTCGTACCGTATATAATTGTTTTCTAAGGTTCATTTGAGTGTATTGCTCAATT 1719
Query 1737 ttttttt 1743
|||||||
Sbjct 1720 TTTTTTT 1726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68257719040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5