BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50240.1 Length=1061 Score E Sequences producing significant alignments: (Bits) Value Ahg495082 jgi|Araly1|495082|fgenesh2_kg.8__898__AT5G50240.2 1378 0.0 > Ahg495082 jgi|Araly1|495082|fgenesh2_kg.8__898__AT5G50240.2 Length=996 Score = 1378 bits (746), Expect = 0.0 Identities = 897/967 (93%), Gaps = 21/967 (2%) Strand=Plus/Plus Query 97 gaa-aaaagaaaaTGAGAGCTCAGGTTTTATTATGTCCAACAATAACAGCTTATGGTCGT 155 ||| |||| |||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 49 GAATAAAA-AAAATGAGAGCTCAGGTTTTATTATGCCCAACAATAACAGCCTATGGTCGC 107 Query 156 CTCTATTGTGCGCCACGTAGACTTCACCGCTACAATtcatcatcatcatcatctcagttt 215 ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 108 CTCTATTGTGCGCCACGTAGACTTCACCGCTACAA-T--TCATCATCATCATCTCAGTTT 164 Query 216 ctgaatctcaatctctctcgcttctccggtgc-tctcttcttcCACATGGAGCAATTCCA 274 ||| |||||| ||||||||||||||||||| | ||||||||||||||| | | | Sbjct 165 CTGGATCTCAGTCTCTCTCGCTTCTCCGGT-CGTCTCTTCTTCCACAT-G-G-------A 214 Query 275 GAGTGGAACTGGCTCGAGCGGCAAGAGAGGGATGGTGGAAAATTTGAAGCGGTACGGTGT 334 |||||||||| ||||||| ||||||| | |||||||||||| |||||||||||||||| Sbjct 215 GAGTGGAACTAGCTCGAGTGGCAAGAAATCAATGGTGGAAAATCTGAAGCGGTACGGTGT 274 Query 335 GATATCGTCGAAAAGAGTAGCTCAAGTTATGGAGGCTTTAGATAGAGGTCTCTTTGTACC 394 |||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 275 GATATCATCGAAGAGAGTAGCTCAAGTTATGGAAGCTTTAGATAGAGGTCTCTTTGTACC 334 Query 395 AGTTGGTTCTTCAGCTTATGTTGATACTCCTGTACCTATAGGTTATAATGCTACCATTTC 454 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 335 AGTTGGATCTTCAGCTTATGTTGATACTCCTGTACCTATAGGTTATAATGCTACCATTTC 394 Query 455 TGCTCCGCATATGCATGCTACTTGCTTGCAGCTCTTGGAAGATAAGCTCCACCCCGGGAT 514 ||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| Sbjct 395 TGCTCCGCATATGCATGCTACTTGCTTGCAGCTTTTGGAAGATAAGCTCAAGCCCGGGAT 454 Query 515 GCGCGCTTTAGATGTCGGCTCAGGAACCGGGTACTTGACTGGCTGTTTTGCTTTGATGGT 574 ||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 455 GCGTGCTTTGGATGTTGGTTCAGGAACCGGGTACTTGACTGGCTGTTTTGCTTTGATGGT 514 Query 575 TGGAGCTGAGGGACGTGTTGTTGGCGTGGATCATATCCCTGAATTGGTTGATATGTCTAT 634 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 515 TGGAGCTGAGGGACGCGTTGTTGGTGTGGATCATATCCCTGAATTGGTTGATATGTCTAT 574 Query 635 CAAGAATATCGAAAAGAGTGTTGCTGCTTCCTTTCTTAAGAAAGGATCTCTCTCCTTACA 694 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| Sbjct 575 CAAGAATATCGAAAAGAGTGTCGCTGCTTCCTTGCTTAAGAAAGGATCTCTCTCCCTACA 634 Query 695 TGTTGGGGATGGAAGAAAAGGTTGGCAAGAGTTTGCACCGTATGATGCAATACACGTAGG 754 |||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 635 TGTTGGTGATGGAAGAAAAGGTTGGCAAGAGTTTGCACCATATGATGCGATACACGTAGG 694 Query 755 AGCAGCGGCATCAGAAATCCCTCAGCCCCTTTTGGATCAGCTAAAACCCGGTGGACGAAT 814 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct 695 AGCAGCGGCATCAGAAATCCCGCAGCCTCTTTTGGATCAGCTAAAACCCGGTGGGCGAAT 754 Query 815 GGTGATTCCACTAGGAACCTATTTTCAAGAGCTCAAGGTAATCGACAAAAACGAGGATGG 874 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 755 GGTGATTCCACTAGGAACCTATTTTCAAGAGCTCAAGGTAATCGACAAAAACAAAGATGG 814 Query 875 TTCAATCAAGGTACATACCGAAACTTCAGTCCGGTATGTGCCCCTCACTAGCCGTGTCGA 934 ||| |||||||| |||||||||||||| ||| |||||||||||||||||||||| | ||| Sbjct 815 TTCCATCAAGGTGCATACCGAAACTTCGGTCAGGTATGTGCCCCTCACTAGCCGCGACGA 874 Query 935 ACAGTTAGGAGGATTTTGACAACAACAACAAAGAGAAAACTCTACATCCCACGTCTTAGT 994 ||||||||||||||||||||| |||| | | ||||||||||||||| ||||| |||||| Sbjct 875 ACAGTTAGGAGGATTTTGACATCAACGA-A--GAGAAAACTCTACATACCACGCCTTAGT 931 Query 995 GTACATATAAAAGGTTGTGTAATGTTTTGTAATATGTTTTGATGGGTAATAAAGAAAATA 1054 ||||||||| | ||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 932 GTACATATAGA-GGTTGTG-AATGTTCTGTAATATGTTTTGATGGGTAATAAAGAAAATC 989 Query 1055 TGTTTAC 1061 ||||||| Sbjct 990 TGTTTAC 996 Score = 52.8 bits (28), Expect = 5e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 49 AACAGATCATCAGAGAAGAAACTAGAAT 76 |||||||||||||||||||||||||||| Sbjct 25 AACAGATCATCAGAGAAGAAACTAGAAT 52 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39495342012 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5