BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50240.1
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495082 jgi|Araly1|495082|fgenesh2_kg.8__898__AT5G50240.2 1378 0.0
> Ahg495082 jgi|Araly1|495082|fgenesh2_kg.8__898__AT5G50240.2
Length=996
Score = 1378 bits (746), Expect = 0.0
Identities = 897/967 (93%), Gaps = 21/967 (2%)
Strand=Plus/Plus
Query 97 gaa-aaaagaaaaTGAGAGCTCAGGTTTTATTATGTCCAACAATAACAGCTTATGGTCGT 155
||| |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 49 GAATAAAA-AAAATGAGAGCTCAGGTTTTATTATGCCCAACAATAACAGCCTATGGTCGC 107
Query 156 CTCTATTGTGCGCCACGTAGACTTCACCGCTACAATtcatcatcatcatcatctcagttt 215
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 108 CTCTATTGTGCGCCACGTAGACTTCACCGCTACAA-T--TCATCATCATCATCTCAGTTT 164
Query 216 ctgaatctcaatctctctcgcttctccggtgc-tctcttcttcCACATGGAGCAATTCCA 274
||| |||||| ||||||||||||||||||| | ||||||||||||||| | | |
Sbjct 165 CTGGATCTCAGTCTCTCTCGCTTCTCCGGT-CGTCTCTTCTTCCACAT-G-G-------A 214
Query 275 GAGTGGAACTGGCTCGAGCGGCAAGAGAGGGATGGTGGAAAATTTGAAGCGGTACGGTGT 334
|||||||||| ||||||| ||||||| | |||||||||||| ||||||||||||||||
Sbjct 215 GAGTGGAACTAGCTCGAGTGGCAAGAAATCAATGGTGGAAAATCTGAAGCGGTACGGTGT 274
Query 335 GATATCGTCGAAAAGAGTAGCTCAAGTTATGGAGGCTTTAGATAGAGGTCTCTTTGTACC 394
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 275 GATATCATCGAAGAGAGTAGCTCAAGTTATGGAAGCTTTAGATAGAGGTCTCTTTGTACC 334
Query 395 AGTTGGTTCTTCAGCTTATGTTGATACTCCTGTACCTATAGGTTATAATGCTACCATTTC 454
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 AGTTGGATCTTCAGCTTATGTTGATACTCCTGTACCTATAGGTTATAATGCTACCATTTC 394
Query 455 TGCTCCGCATATGCATGCTACTTGCTTGCAGCTCTTGGAAGATAAGCTCCACCCCGGGAT 514
||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 395 TGCTCCGCATATGCATGCTACTTGCTTGCAGCTTTTGGAAGATAAGCTCAAGCCCGGGAT 454
Query 515 GCGCGCTTTAGATGTCGGCTCAGGAACCGGGTACTTGACTGGCTGTTTTGCTTTGATGGT 574
||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GCGTGCTTTGGATGTTGGTTCAGGAACCGGGTACTTGACTGGCTGTTTTGCTTTGATGGT 514
Query 575 TGGAGCTGAGGGACGTGTTGTTGGCGTGGATCATATCCCTGAATTGGTTGATATGTCTAT 634
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 515 TGGAGCTGAGGGACGCGTTGTTGGTGTGGATCATATCCCTGAATTGGTTGATATGTCTAT 574
Query 635 CAAGAATATCGAAAAGAGTGTTGCTGCTTCCTTTCTTAAGAAAGGATCTCTCTCCTTACA 694
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||
Sbjct 575 CAAGAATATCGAAAAGAGTGTCGCTGCTTCCTTGCTTAAGAAAGGATCTCTCTCCCTACA 634
Query 695 TGTTGGGGATGGAAGAAAAGGTTGGCAAGAGTTTGCACCGTATGATGCAATACACGTAGG 754
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 635 TGTTGGTGATGGAAGAAAAGGTTGGCAAGAGTTTGCACCATATGATGCGATACACGTAGG 694
Query 755 AGCAGCGGCATCAGAAATCCCTCAGCCCCTTTTGGATCAGCTAAAACCCGGTGGACGAAT 814
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 695 AGCAGCGGCATCAGAAATCCCGCAGCCTCTTTTGGATCAGCTAAAACCCGGTGGGCGAAT 754
Query 815 GGTGATTCCACTAGGAACCTATTTTCAAGAGCTCAAGGTAATCGACAAAAACGAGGATGG 874
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 755 GGTGATTCCACTAGGAACCTATTTTCAAGAGCTCAAGGTAATCGACAAAAACAAAGATGG 814
Query 875 TTCAATCAAGGTACATACCGAAACTTCAGTCCGGTATGTGCCCCTCACTAGCCGTGTCGA 934
||| |||||||| |||||||||||||| ||| |||||||||||||||||||||| | |||
Sbjct 815 TTCCATCAAGGTGCATACCGAAACTTCGGTCAGGTATGTGCCCCTCACTAGCCGCGACGA 874
Query 935 ACAGTTAGGAGGATTTTGACAACAACAACAAAGAGAAAACTCTACATCCCACGTCTTAGT 994
||||||||||||||||||||| |||| | | ||||||||||||||| ||||| ||||||
Sbjct 875 ACAGTTAGGAGGATTTTGACATCAACGA-A--GAGAAAACTCTACATACCACGCCTTAGT 931
Query 995 GTACATATAAAAGGTTGTGTAATGTTTTGTAATATGTTTTGATGGGTAATAAAGAAAATA 1054
||||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 932 GTACATATAGA-GGTTGTG-AATGTTCTGTAATATGTTTTGATGGGTAATAAAGAAAATC 989
Query 1055 TGTTTAC 1061
|||||||
Sbjct 990 TGTTTAC 996
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 49 AACAGATCATCAGAGAAGAAACTAGAAT 76
||||||||||||||||||||||||||||
Sbjct 25 AACAGATCATCAGAGAAGAAACTAGAAT 52
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5