BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50250.1
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949546 jgi|Araly1|949546|scaffold_801433.1 1280 0.0
Ahg495082 jgi|Araly1|495082|fgenesh2_kg.8__898__AT5G50240.2 113 2e-24
> Ahg949546 jgi|Araly1|949546|scaffold_801433.1
Length=918
Score = 1280 bits (693), Expect = 0.0
Identities = 850/925 (92%), Gaps = 13/925 (1%)
Strand=Plus/Plus
Query 28 AATCTCTCCAAAATCAGAAAAATGACTTCTTCAGTACTAACCCCAAGCTTAAAGCTTTTA 87
||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 1 AATCTCTCCAAAATCAG-AAAATGACTTCTTCAATACTAACCTCAAGCCTAAAGCTTTTA 59
Query 88 GCT-ATGACGAATTCTTCCTCTTCGACCCTTTTTTGTATTCCTTCTATCTTCAACATCTC 146
||| || |||||||||| |||||||||||||| ||| |||||||||||| || ||| ||
Sbjct 60 GCTGTTG-CGAATTCTTCTTCTTCGACCCTTTTCTGTCTTCCTTCTATCTCCACCATTTC 118
Query 147 GTCCTCTGAATCTCACCGCTTCAATTTTTCCTTATCCT-CACGACCCGTTAATCTCACAC 205
||||| || |||||| ||||||||||||||| ||| || ||||| |||||||| |||
Sbjct 119 TTCCTCCAAACCTCACCACTTCAATTTTTCCTT-CCCTCCAAGACCCATTAATCTCCCAC 177
Query 206 TCTCTCTCAAATCCAAAACTCTTCGTAACTCATCTCCTGTTGTTACTTTCGTTTCCCAAA 265
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 178 TCTCTCTCAAATCCAAAACTCTCCGTAACTCATCTCCTGTTGTTACTTTTGTTTCCCAAA 237
Query 266 CTTCGAATTGGGCTGAGGAAGAAGAAGGTGAGGATGGAAGCATCGGAGGTACTTCAGTCA 325
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 238 CTTCGGATTGGCCTGAGGAAGAAGAAGGTGAGGATGGAAGCATCGGAGGTACTTCCGTCA 297
Query 326 CTGTAGATGAGAGTTTCGAGTCTGAAGACGGTGTTGGATTCCCGGAGCCACCGGAAGAGG 385
|||||||||||| |||||||||||| ||||||| || ||||| | |||||||||||||||
Sbjct 298 CTGTAGATGAGAATTTCGAGTCTGATGACGGTGGTGAATTCCAGAAGCCACCGGAAGAGG 357
Query 386 CTAAATTATTCGTCGGAAACTTGCCGTACGATGTTGATAGTCAAGCTTTAGCTATGCTCT 445
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTAAATTGTTCGTCGGAAACTTGCCGTACGATGTTGATAGTCAAGCTTTAGCTATGCTCT 417
Query 446 TTGAACAAGCTGGTACTGTTGAGATTTCAGAGGTTATATACAATAGGGACACTGATCAAA 505
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTGAGCAAGCTGGTACTGTTGAGATTTCAGAGGTTATATACAATAGGGACACTGATCAAA 477
Query 506 GTCGTGGATTTGGGTTTGTAACAATGAGTACAGTTGAAGAAGCAGAGAAAGCTGTTGAGA 565
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 478 GTCGTGGATTTGGGTTTGTAACAATGAGTACAGTTGAAGAAGCAAAGAAAGCTGTTGAGA 537
Query 566 AGTTCAATAGTTTTGAAGTGAATGGGAGGCGTT-TGACAGTAAACAGAGCAGCTCCAAGA 624
|||||||| ||| ||||||||||||||||| || ||||||| |||| |||||| || |||
Sbjct 538 AGTTCAATCGTTATGAAGTGAATGGGAGGC-TTCTGACAGTGAACATAGCAGCACCTAGA 596
Query 625 GGATCAAGACCTGAACGACAACCTCGTGTATATGATGCTGCGTTTAGGATCTATGTTGGG 684
||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 597 GGATCAAGACCGGAAAGACAACCTCGTCAATATGATGCTGCGTTTAGGATCTATGTTGGG 656
Query 685 AACCTGCCATGGGATGTGGATAGTGGTCGTTTGGAAC-GATTATTTAGCGAGCATGGGAA 743
|| ||||||||||||||||||| || |||||| ||| | | |||||||||||||||||
Sbjct 657 AATCTGCCATGGGATGTGGATAATGATCGTTTACAACAGGTG-TTTAGCGAGCATGGGAA 715
Query 744 AGTAGTTGATGCCCGAGTGGTTT-CTGATAGAGAGACAGGTCGTTCACGTGGGTTTGGGT 802
|||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 716 AGTAGTTGATGCTAGAGTGGTTTAC-GATAGAGAGACAGGTCGTTCACGCGGGTTTGGGT 774
Query 803 TTGTT-CAAATGTCGAATGAGAATGAAGTTAACGTTGCCATTGCTGCTCTTGATGGACAG 861
||||| ||| |||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 775 TTGTTACAA-TGTCGAATGAGAATGAAGTTAACGACGCTATTGCTGCTCTTGATGGACAG 833
Query 862 AATTTGGAAGGCAGAGCAATTAAAGTGAACGTGGCTGAGGAACGAACAAGGCGTTGATTT 921
||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |||||
Sbjct 834 AATTTGGAAGGCAGAGCAATTAAAGTGAACGTGGCCGAGCAACGACCAAGGCGTGGATTT 893
Query 922 TGATAGCTCAGTGAGTGTTAATATT 946
|||||||||| ||||||||| ||||
Sbjct 894 TGATAGCTCAATGAGTGTTAGTATT 918
> Ahg495082 jgi|Araly1|495082|fgenesh2_kg.8__898__AT5G50240.2
Length=996
Score = 113 bits (61), Expect = 2e-24
Identities = 76/83 (92%), Gaps = 2/83 (2%)
Strand=Plus/Minus
Query 1026 GTAAACATATTTTCTTTATTACCCATCAAAACATATTACAAAACATTACACAACCTTTTA 1085
||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| | |
Sbjct 996 GTAAACAGATTTTCTTTATTACCCATCAAAACATATTACAGAACATT-CACAACCTCT-A 939
Query 1086 TATGTACACTAAGACGTGGGATG 1108
||||||||||||| ||||| |||
Sbjct 938 TATGTACACTAAGGCGTGGTATG 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41287119111
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5