BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50260.1
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495086 jgi|Araly1|495086|fgenesh2_kg.8__902__AT5G50260.1 2183 0.0
> Ahg495086 jgi|Araly1|495086|fgenesh2_kg.8__902__AT5G50260.1
Length=1517
Score = 2183 bits (1182), Expect = 0.0
Identities = 1418/1529 (93%), Gaps = 27/1529 (2%)
Strand=Plus/Plus
Query 4 AGAGCTTGCTTGCGCCATTAAATCAACATAAAGTTCAATTATAGTTTGAAATCTTTATGA 63
||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 AGAGCTTACTTGTACCATTAAATCAACATAAAGTTCAATTATAGTTTG--ATCTTTATGT 58
Query 64 ATCTCCATTAATTAATGTATCCATGTCACTAACCTTGAAATCTTTGTTGAATCCCACAAG 123
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 59 ATCTCCATTTATTAATGTATCCATGTCATTAACCTTGAAATCTTTGTTGAATCCCACAAG 118
Query 124 TAATCCTTTAACCCC-TTTTGGTACTTTTCATTACATATCGTCATCACAATAACCTCTCA 182
|||||||||| |||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 119 TAATCCTTTAGCCCCTTTTTGGTATTTTTCATTACATATCGTCATCACAATAGTATCTCA 178
Query 183 CCAATGTATCTATAATCCCTATATAAACACTTTCTCTTTAGTCCTGATTACCATCAACAA 242
|||| || |||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 179 CCAA--AATATATAATCCCTATATAAACACTTTCTCTTTAGTCC---TTACCATCCACAA 233
Query 243 ACTCAATCACAATCACAAG-TAAATACAAAAATCACCATAGAAAAATATGAAGCGATTTA 301
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 234 ACTCAATCTCAATCACAAGAAAAATACAAAAATCACCATAGAAAAATATGAAGCGATTTA 293
Query 302 TTGTTCTTGCGCTTTGCATGCTTATGGTTCTTGAAACCACAAAGGGTTTAGATTTCCAT- 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 294 TTGTTCTTGCGCTTTGCATGCTTATGGTTCTTGAAACCACAAAGAGTTTAGATTTCCATG 353
Query 361 AACAAAGATGTGGAATCAGAGAATAGCTTGTGGGAGCTATACGAACGGTGGAGGAGTCAC 420
|| |||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 354 AA-AAAGATGTGGAATCAGAGGATAGCTTGTGGGAGCTATACGAACGGTGGAAGAGCCAC 412
Query 421 CACACTGTTGCTAGGAGCCTTGAAGAGAAAGCTAAGAGGTTCAACGTGTTCAAGCACAAC 480
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 413 CACACAATTGCTAGGAGCCTTGAAGAGAAAGCTAAGAGGTTCAACGTGTTTAAGCACAAT 472
Query 481 GTGAAGCACATCCATGAGACCAACAAGAAGGATAAA-TCTTACAAGCTCAAGCTAAACAA 539
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||
Sbjct 473 GTGAAGCACATCCATGAGACCAACAAGAAGGA-AAATTCTTACAAGCTCAAGCTCAACAA 531
Query 540 GTTTGGTGACATGACTAGTGAAGAATTTAGGAGAACATACGCTGGTTCAAACATCAAACA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GTTTGGTGACATGACTAGTGAAGAATTTAGGAGAACATACGCTGGTTCAAACATCAAACA 591
Query 600 TCATAGGATGTTTCAAGGCGaaaaaaaGGCCACAAAGAGCTTCATGTATGCAAATGTAAA 659
|||||||||||||||||| |||| | || |||||||||||||||||||||||||||| |
Sbjct 592 TCATAGGATGTTTCAAGGAGAAAGACAGACCACAAAGAGCTTCATGTATGCAAATGTTGA 651
Query 660 TACTCTCCCAACCTCCGTTGATTGGAGAAAGAATGGAGCCGTCACTCCTGTCAAAAACCA 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 652 TACTCTCCCAACCTCCGTTGATTGGAGAAAGAATGGAGCCGTAACTCCTGTCAAAAACCA 711
Query 720 AGGCCAATGCGGGAGTTGTTGGGCGTTTTCAACAGTTGTTGCGGTGGAAGGGATCAACCA 779
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||
Sbjct 712 AGGCCAATGCGGGAGTTGTTGGGCGTTTTCAACAGTTGTGGCTGTGGAAGGAATCAATCA 771
Query 780 AATAAGAACTAAAAAGCTGACATCACTCTCAGAGCAAGAGCTAGTAGATTGTGATACAAA 839
||||||||| ||||||||||||||||| ||||| ||||||||||| || ||||| |||||
Sbjct 772 AATAAGAACGAAAAAGCTGACATCACTATCAGAACAAGAGCTAGTGGACTGTGACACAAA 831
Query 840 CCAGAACCAAGGATGCAATGGAGGTCTAATGGACCTTGCTTTTGAGTTCATCAAGGAGAA 899
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 832 CAAGAACCAAGGATGCAATGGAGGTTTAATGGACCTTGCTTTTGAGTTCATCAAGGAGAA 891
Query 900 AGGAGGACTCACAAGTGAGCTAGTGTACCCTTACAAGGCTTCTGATGAAACTTGTGACAC 959
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 892 AGGAGGACTCACAAGCGAGCTAGTGTACCCTTACAAAGCTTCTGATGAAACTTGTGACAC 951
Query 960 AAACAAAGAAAATGCTCCGGTAGTTTCAATCGATGGACACGAAGATGTTCCTAAGAACAG 1019
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 952 AAACAAAGAAAATGCTCCGGTAGTTTCAATCGATGGACATGAAGATGTTCCTAAGAATAG 1011
Query 1020 CGAGGATGATCTAATGAAAGCTGTTGCTAATCAGCCTGTTTCTGTTGCTATTGATGCTGG 1079
|| | |||||||||||||||||||||| |||| ||||| |||||||| |||||||||||
Sbjct 1012 TGAAGTTGATCTAATGAAAGCTGTTGCTCATCAACCTGTCTCTGTTGCAATTGATGCTGG 1071
Query 1080 AGGCTCAGACTTTCAATTCTACTCCGAGGGAGTGTTT-ACCGGGAGATGCGGAACAGAGC 1138
||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||||||
Sbjct 1072 AGGCTCAGACTTTCAATTCTACTCCGAGGGAGT-TTTCACGGGGCGATGCGGAACAGAGC 1130
Query 1139 TAAACCATGGAGTTGCGGTAGTAGGGTATGGAACAACGATAGACGGAACAAAGTATTGGA 1198
| |||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||
Sbjct 1131 TGAACCATGGAGTTGCGGTAGTTGGCTATGGAACGACGATAGATGGAACAAAGTATTGGA 1190
Query 1199 TTGTTAAGAATTCATGGGGAGAGGAATGGGGAGAGAAAGGATACATAAGAATGCAGAGAG 1258
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1191 TTGTTAAGAACTCATGGGGAGAGGAATGGGGAGAGAAAGGATACATAAGAATGCAAAGAG 1250
Query 1259 GGATTCGTCATAAAGAAGGACTTTGTGGTATTGCAATGGAAGCTTCTTATCCTCTCAAGA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GGATTCGTCATAAAGAAGGACTTTGTGGTATTGCAATGGAAGCTTCTTATCCTCTCAAGA 1310
Query 1319 ACTCCAACACTAACCCTTCTAGACTTTCCTTGGACTCGCTTAAGGATGAACTCTAAA--- 1375
||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1311 ACTCCAACACTAATCCTTCTAGACTTTCCTCGGACTCACTTAAGGATGAACTCTAAAAGC 1370
Query 1376 T-TA-A-ATCT-CTTTATATTAAGATTAAATAGACATTGACAAGTTTGTTTATGATGATT 1431
| | | || | ||| || ||| ||||||| ||||||| |||| |||||||| ||| ||
Sbjct 1371 TCTTTATATTTACTT-ATTTTA-GATTAAAAAGACATTAACAAATTTGTTTAGGATTCTT 1428
Query 1432 GttttttttttAAATATATTTCTTTTTCATTAATAGGTT--A-TGGTTTTCAATGTATGA 1488
|||| ||||| ||||||| |||| || |||||||||| | |||||||||||||||||
Sbjct 1429 GTTTGATTTTTCAATATATATCTTCATCGTTAATAGGTTGTAATGGTTTTCAATGTATGA 1488
Query 1489 AGTTGATGGGAATCGTTTGAATTCGTTAA 1517
|||||||||||||||||||||||| ||||
Sbjct 1489 AGTTGATGGGAATCGTTTGAATTCATTAA 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57706721175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5