BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50280.1
Length=2172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949551 jgi|Araly1|949551|scaffold_801438.1 3136 0.0
> Ahg949551 jgi|Araly1|949551|scaffold_801438.1
Length=2212
Score = 3136 bits (1698), Expect = 0.0
Identities = 2032/2190 (93%), Gaps = 36/2190 (2%)
Strand=Plus/Plus
Query 1 ATGTCCAT-G-G-CGTCTTCTTCTCTTGCGACCCAATCCtttttttcttcctttcctcta 57
|||||||| | | |||||||||||||||||||||||||||||| | |||| |||||| ||
Sbjct 21 ATGTCCATAGCGTCGTCTTCTTCTCTTGCGACCCAATCCTTTTATACTTCATTTCCTTTA 80
Query 58 tctcaccgacttcacttccctgtaccttatcttcttcttcgttcttc-tttctttcgaaa 116
|||||||||| |||| |||||| |||||||||||||||||| ||||| || | ||||||
Sbjct 81 TCTCACCGACATCACCTCCCTGAACCTTATCTTCTTCTTCGCTCTTCACTT-TATCGAAA 139
Query 117 a-cca--cttagtctctctgcta---cttccccttcgtcatcttcttcttctCCTTCCAT 170
| ||| ||| |||||||||||| |||||||||||||||||||||| | | |||||||
Sbjct 140 ACCCATTCTTTGTCTCTCTGCTACTTCTTCCCCTTCGTCATCTTCTTC-T-T-CTTCCAT 196
Query 171 TTTCCTCTCCTGCTTCGATGACGCTTTGCCAGATAAGATCCAACAACCAGAAAATTCGAC 230
|||||||||||||||||||||| |||| |||| |||||| ||||||||||||| ||||||
Sbjct 197 TTTCCTCTCCTGCTTCGATGACCCTTTACCAGGTAAGATTCAACAACCAGAAATTTCGAC 256
Query 231 -AATCAATAGCgaagaaagtgaatgtgaagaagaagatgatgaagaaggagatgatTTCA 289
||| | || | || ||| | | |||||| ||||| || |||||||||||||||||||
Sbjct 257 AAAT-ATTAACCAA-AAA--G-A--TGAAGATGAAGAAGAAGAAGAAGGAGATGATTTCA 309
Query 290 CAGACCCAATTCTTAAATTCTTCAAGTCACGAACTTTAACATCAGAATCAACTGC-AGAC 348
||||||||||||||||||||||||||||||||||||||||||| |||| || | ||||
Sbjct 310 CAGACCCAATTCTTAAATTCTTCAAGTCACGAACTTTAACATCGGAATTGAC-CCAAGAC 368
Query 349 CCAGCTCGAGAATCCAAATTCTCCCTCCAGAAGAATCGTCGAACTTCCTGGCATTTAGCT 408
|||| ||||||||||||||||||||||||||||| ||||||||| || ||||| || |||
Sbjct 369 CCAGGTCGAGAATCCAAATTCTCCCTCCAGAAGAGTCGTCGAACCTCTTGGCACTTGGCT 428
Query 409 CCAGACTTCGCTGACCCCGAAACTGAAATCGAGTCTAAGCCTGAGGAATCCGTCTTTGTG 468
|||||||||||||||||| |||||| || ||||| |||||||||||||||||| ||||
Sbjct 429 TCAGACTTCGCTGACCCCGGAACTGAGATTGAGTCCGAGCCTGAGGAATCCGTCTCTGTG 488
Query 469 ACAAACCAACAAACACTTGGTGTGCATA-TTCCATTCGAAAGTGGCGTCGCTAGGGAAAT 527
|||| |||||||||||||||||||| | || | ||||||||| || ||||| |||||||
Sbjct 489 GCAAATCAACAAACACTTGGTGTGCACACTT-CTTTCGAAAGTAGCATCGCTGGGGAAAT 547
Query 528 -CTTGGAACTTGCTAAGAAT-TTGAAAGAGAATCAAACTTTGGGAGAGATGTTATCAGGT 585
||| ||| ||||||||| | || | ||||||||||||| ||||||||||||||||||||
Sbjct 548 ACTT-GAAATTGCTAAGAGTCTT-ACAGAGAATCAAACTCTGGGAGAGATGTTATCAGGT 605
Query 586 TTCGAAAGAAGGGTTAGTGATACAGAGTGTGTAGAGGCATTAGTGATGATGGGTGAATCT 645
||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||| |
Sbjct 606 TTCGACAGAAGGGTTAGCGAAACAGAGTGTGTAGAGGCATTGGTGATGATGGGTGAATTT 665
Query 646 GGTTTTGTGAAGAGTTGTCTATATTTCTATGAGTGGATGAGTTTACAAGAACCTTCCCTT 705
|||||||| |||| |||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 666 GGTTTTGTAAAGACTTGTTTGTATTTCTATGAGTGGATGAGTTTGCAAGAACCTTCCCTT 725
Query 706 GCTTCGCCTCGTGCTTGCTCTGTGTTGTTTACATTGCTCGGTAGAGAAAGAATGGCTGAT 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GCTTCGCCTCGTGCTTGCTCTGTGTTGTTTACATTGCTCGGTAGAGAAAGAATGGCTGAT 785
Query 766 TACATTCTGCTTCTGCTAAGTAATTTACCAGATAAGGAAGAGTTTAGAGATGTTCGTCTC 825
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 786 TATATTCTGCTTCTGCTAAGTAATTTACCAGACAAGGAAGAGTTCAGAGATGTTCGTCTC 845
Query 826 TACAATGCCGCCATTTCT-GGTCTCTCAGCTTCTCAAAGGTATGATGATGCTTGGGAAGT 884
|| ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct 846 TATAATGCCGCCATTTCTGGGT-TATCAGCTTCTCAAAGGTATGATGATGCTTGGGAAGT 904
Query 885 GTATGAAGCTATGGATAAGATCAATGTGTATCCGGACAATGTTACATGTGCTA-TATTGA 943
||||||||||||| ||||||||||||||| |||||| |||||||||||||||| || |||
Sbjct 905 GTATGAAGCTATGAATAAGATCAATGTGTTTCCGGATAATGTTACATGTGCTATTA-TGA 963
Query 944 TCACAACCTTGAGGAAAGCAGGACGAAGTGCGAAAGAAGTTTGGGAGATATTCGAGAAGA 1003
| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 TAACAACCATGAGGAAGGCAGGACGAAGTGCGAAAGAAGTTTGGGAGATATTCGAGAAGA 1023
Query 1004 TGAGTGAGAAAGGTGTGAAGTGGAGTCAGGATGTTTTCGGTGGCCTTGTGAAGTCGTTTT 1063
|||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1024 TGAGCGAGAAAGGTGTGAAGTGGAGTCAGGATGTTTTCGGTAGCCTTGTGAAATCGTTTT 1083
Query 1064 GTGATGAAGGGCTT-AAAGAAGAAGCTCTTGTGATTCAAACAGAGATGGAGAAGAAAGGT 1122
|||| |||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1084 GTGACGAAGGG-TTGAAAGAAGAAGCTCTTGTAATTCAAACAGAGATGGAGAAGAAAGGT 1142
Query 1123 ATCCGTTCAAACACGATTGTGTATAATACGTTGATGGATGCTTACAACAAATCCAACCAC 1182
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1143 ATCCGTTCAAACACGATTGTGTATAATACGTTGATGGATGCTTATAATAAATCCAACCAC 1202
Query 1183 ATAGAAGAAGTGGAAGGTCTTTTTACTGAAATGAGAGATAAAGGCTTGAAGCCTTCGGCT 1242
|||||||||||||||||||||||| ||||||||| || |||||||||||||||| | |||
Sbjct 1203 ATAGAAGAAGTGGAAGGTCTTTTTGCTGAAATGAAAGCTAAAGGCTTGAAGCCTACAGCT 1262
Query 1243 GCAACTTATAACATTCTTATGGATGCTTATGCTAGAAGGATGCAGCCTGATATCGTTGAG 1302
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1263 GCGACTTATAACATTCTTATGGATGCTTATGCTAGAAGGATGCAGCCTGATATTGTAGAG 1322
Query 1303 ACACTTCTGCGGGAGATGGAGGATTTAGGTTTAGAGCCAAATGTGAAATCGTACACGTGT 1362
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 ACATTTCTGCGGGAGATGGAGGATTTAGGTTTAGAGCCAAATGTGAAATCGTACACGTGT 1382
Query 1363 TTGATTAGTGCGTATGGGAGGACGAAGAAGATGAGTGATATGGCTGCTGATGCTTTCCTG 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 TTGATTAGTGCGTATGGGAGGACGAAGAAGATGAGTGATATGGCTGCTGATGCTTTCCTG 1442
Query 1423 CGGATGAAGAAAGTAGGTTTGAAACCTTCTTCACATTCTTACACAGCTCTTATTCATGCT 1482
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1443 CGGATGAAAAAAGTAGGTTTGAAACCTTCTTCACATTCTTATACAGCTCTTATTCATGCT 1502
Query 1483 TACTCGGTTAGCGGGTGGCACGAAAAAGCTTATGCTTCCTTTGAAGAGATGTGTAAGGAG 1542
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1503 TACTCGGTTAGTGGGTGGCACGAAAAAGCTTATGCTTCCTTTGAAGAGATGTGGATGGAG 1562
Query 1543 GGGATTAAACCGTCGGTTGAAACATACACATCAGTTCTTGATGCATTCAGACGATCAGGC 1602
||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 1563 GGGATCAAACCATCGGTTGAAACATACACATCACTTCTCGATGCATTCAGACGATCTGGT 1622
Query 1603 GACACTGGAAAGCTGATGGAAATTTGGAAACTAATGCTGAGAGAAAAAATCAAAGGGACA 1662
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1623 GACACTGAAAAGCTGATGGAAATTTGGAAACTAATGTTGAGAGAAAAAATCAAAGGGACA 1682
Query 1663 CGGATAACATATAACACTCTTCTCGATGGGTTTGCCAAGCAAGGACTCTACATTGAAGCA 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 CGGATAACATATAACACTCTTCTCGATGGGTTTGCCAAGCAAGGACTCTACATTGAAGCA 1742
Query 1723 AGGGATGTTGTATCTGAGTTTAGTAAAATGGGTTTGCAGCCGAGTGTCATGACTTACAAT 1782
||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 1743 AGGGATGTTGTTTCTGAGTTTGGTAAAATGGGTTTGCAGCCAAGTGTTATGACTTACAAT 1802
Query 1783 ATGCTGATGAATGCATACGCACGGGGAGGACAAGATGCAAAACTGCCGCAACTGTTGAAG 1842
|||||||||||||| ||||||||||||||||||||||| ||| |||| || |||||||||
Sbjct 1803 ATGCTGATGAATGCCTACGCACGGGGAGGACAAGATGCGAAATTGCCACAGCTGTTGAAG 1862
Query 1843 GAAATGGCTGCTCTTAACTTAAAACCTGATTCCATCACATATTCAACAATGATCTACGCG 1902
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1863 GAAATGGCTGCTCTTAACATAAAACCTGATTCCATCACATATTCAACCATGATCTACGCG 1922
Query 1903 TTTGTTCGTGTTCGAGACTTCAAAAGGGCATTCTTTTACCACAAGATGATGGTTAAAAGC 1962
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 TTTGTTCGTGTTAGAGACTTCAAAAGGGCATTCTTTTACCACAAGATGATGGTTAAAAGC 1982
Query 1963 GGGCAAGTACCAGACCCAAGGTCCTATGAGAAACTTAGGGCGATTCTGGAAGACAAGGCA 2022
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1983 GGGCAAGTACCAGACCCAAGGTCCTATGAGAAACTTAGGGCGATTCTGGAAAACAAGGTA 2042
Query 2023 AAGACAAAGAACAGAAAGGATAAGACTGCCATACTTGGTATAATTAATAGCAAATTCGGT 2082
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2043 AAGACACAGAACAGAAAGGATAAGACTGCCATTCTTGGTATAATTAATAGCAAATTCGGT 2102
Query 2083 CGGGTTAAAGCTAAGACGAAGGGGAAGAAAGATGAGTTTTGGAAGTACAAGACGAATCGA 2142
||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2103 AGGGTTAAGGCTAAGACGAAGGGGAAGAAAGATGAGTTTTGGAAGTACAAGAAGAGCCGA 2162
Query 2143 ACTACTTCTCCTGGTCGTCACCGATCTTGA 2172
||||||||||||| ||||||||||||||||
Sbjct 2163 ACTACTTCTCCTGATCGTCACCGATCTTGA 2192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81741665770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5