BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50290.1
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495088 jgi|Araly1|495088|fgenesh2_kg.8__904__AT5G50290.1 1528 0.0
> Ahg495088 jgi|Araly1|495088|fgenesh2_kg.8__904__AT5G50290.1
Length=981
Score = 1528 bits (827), Expect = 0.0
Identities = 932/983 (95%), Gaps = 5/983 (1%)
Strand=Plus/Plus
Query 1 ACACATCACTCTCTTGTAAACAACCCAAATAAAGAAAATGAAAATCTTGATCTTGATTCT 60
|||||||| |||||||||||| ||||||| ||||||||||||||||||||| |||||| |
Sbjct 1 ACACATCAGTCTCTTGTAAACCACCCAAACAAAGAAAATGAAAATCTTGATATTGATTAT 60
Query 61 ATCCTTTGTGACACTCTTTGAGATTTGCGTTGTGGACGCATGTCGATCATACTGTGGAAA 120
||||| | || ||||| ||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 61 ATCCTCTCTGGCACTCCTTGAGCTTTGCGTTGTGGACGCATGCCGATCATACTGTGGAAA 120
Query 121 CATAACCGTTGATTATCCGTTTGGGATCCGAAACGGATGTGGGCATCCAGGGTATAGAGA 180
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 121 CATAACCGTTGATTACCCGTTTGGAATCCGAAATGGATGTGGGCATCCAGGGTATAGAGA 180
Query 181 TCTATTGTTTTGTATGAACGATGTGTTGATGTTTCACATAAGTTCAGGTTCTTATAGAGT 240
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 TCTACTGTTTTGTATGAACGATGTGTTGATGTTTCACATAAGTTCTGGTTCTTATAGAGT 240
Query 241 TTTGGACATCGATTACGCATATCAGTCCATAACACTGCATGATCCTCACATGTCGAACTG 300
||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 241 TTTAGACATCGATTACGCATATCAATCCATAACGCTGCATGATCCTCACATGTCGACCTG 300
Query 301 CGAAACCATCGTGCTCGGTGGCAAAGGCAATGGCTTTGAAGCTGAGGATTGGAGAACTCC 360
||||||||||||||| || |||||||||||||||||||||||||||||||||||| | ||
Sbjct 301 CGAAACCATCGTGCTTGGCGGCAAAGGCAATGGCTTTGAAGCTGAGGATTGGAGAGCCCC 360
Query 361 ATATTTCAATCCTACCTCAGATAATGTCTTTATGTTGATCGGATGTTCTCCTAAATCTCC 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 TTATTTCAATCCTACCTCAGATAATGTCTTTATGTTGATTGGATGTTCTCCTAAATCTCC 420
Query 421 TATATTTCAAGGCTTCCCGGAAAAGAAAGTGCCGTGCCGCAACATCTCTGGAATGAGCTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATATTTCAAGGCTTCCCGGAAAAGAAAGTGCCGTGCCGCAACATCTCTGGAATGAGCTG 480
Query 481 CGAAGAATACATGTCATGTCCAGCTTGGGACATGGTCGGATACAGACAACCGGGTATACA 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 CGAAGAATACATGTCATGTCCAGCATGGGACATGGTCGGATACAGACAACCGGGTATACA 540
Query 541 TTCCGGGTCAGGTCCACCCATGTGTTGTGGGGTCGGGTTCGAATCCGTAAAAGCGATTAA 600
|||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |||||
Sbjct 541 TTCCGGTTCAGGTCCACCTATGTGTTGTGCGGTCGGGTTCGAATCCGTAAAAGCAATTAA 600
Query 601 TCTAAGTAAGTTGGAGTGTGAAGGATACAGTAGTGCGTATAATCTAGCACCCTTGAAACT 660
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 601 TCTAAGTAAGTTGGAGTGTGAAGGATACAGTAGTGCGTATAATCTTGCACCCTTGAAGCT 660
Query 661 TAGAGGACCCTCTGATTGGGCTTATGGGATACGTGTTAAGTATGAACTCCAAGGAAGTGA 720
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 661 TAGAGGACCCTCTGATTGGGCTTATGGGATACGTGTTAAGTACGAGCTCCAAGGAAGTGA 720
Query 721 TGCGTTTTGTCGTGCGTGTGTTGCAACTTCTGGGACTTGTGGCTATGA--AC-CTGCTGA 777
|||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 721 TGCGTTTTGTCGTGCGTGTGTTGCAACTTCTGGGACTTGTGGTTATGATGAATCTGCTGA 780
Query 778 TGGTGGAGGGCTTAGACATGTTTGCATGTGTGACAACCATAATTCCACTACAAACTGTGA 837
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 781 TGGTGGACGGCTTAGACATGTTTGCATGTGTGATAACCATAATTCCACTACAAACTGTGA 840
Query 838 TTCAGTTATATCACCAACCGGTGCATCATCAAGTGTTCGACCAAAAGCTATCGGATCACT 897
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 841 TTCAGTTATATCACCAACCGGTGCATCATCAAGTGTTCGACCAAAAACTATCGGATCACT 900
Query 898 GATCATCTACTTCATAGCTATGAACATAGGCTTTCAGAGAAGACAGCGATGAGTTACCCT 957
|||||||||||||||| ||||||| |||||||||||||||||| | |||||||||||||
Sbjct 901 GATCATCTACTTCATAACTATGAATATAGGCTTTCAGAGAAGAAAATGATGAGTTACCCT 960
Query 958 TCttttttttCAGAGAAGACAAT 980
| || |||| |||||||||||||
Sbjct 961 T-TTCTTTT-CAGAGAAGACAAT 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45938114985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5