BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50300.1
Length=2057
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495089 jgi|Araly1|495089|fgenesh2_kg.8__905__AT5G50300.1 2815 0.0
Ahg489598 jgi|Araly1|489598|fgenesh2_kg.6__2732__AT5G50300.1 1029 0.0
> Ahg495089 jgi|Araly1|495089|fgenesh2_kg.8__905__AT5G50300.1
Length=1989
Score = 2815 bits (1524), Expect = 0.0
Identities = 1848/2000 (92%), Gaps = 40/2000 (2%)
Strand=Plus/Plus
Query 1 CTCCTGCATTTGCTCCCTATATTCCTCATTATTATTAGTCATGGGAAGAGAGAAGACGTT 60
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||
Sbjct 1 CTCCTGCATTTGCTCCCTATATTCCTCATTATTATTAGCCATGGGTAGAGAGAAGAAGTT 60
Query 61 ATGCAAGTCGTGGAGCGACATGAAGAAACACTTAAACGACACCGTTTCCAAGAGCTTCAT 120
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 ATGCAAGTCGTGGAACGACATGAAGAAACACTTAAACGACACCGTTTCCAAGAGTTTCGC 120
Query 121 CGGCCGTTTCTTCAAGCTCGAAGCAAGAAAAACAACGTTCACAACTGAACTACGAGCTGC 180
||| ||||||||||| || |||||||| |||||||| |||||||| ||||||||||||||
Sbjct 121 CGGTCGTTTCTTCAAACTAGAAGCAAGGAAAACAACTTTCACAACCGAACTACGAGCTGC 180
Query 181 GACCGCCACATTCCTCACCATGGCTTATATCATTACCGTGAACGCCAATATCTTAGCCGA 240
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 181 AACCGCCACATTCCTCACCATGGCTTATATCATTACTGTTAACGCCAATATCTTAGCCGA 240
Query 241 CTCCGGTGCCACTTGCTCCATCAACGACTGTTCCACCGTGGCCAGTTCTTCACCACCCGG 300
||||||||||||||||||| || ||||||| ||| | |||||| |||||||| |||||||
Sbjct 241 CTCCGGTGCCACTTGCTCCTTCCACGACTGCTCCGCTGTGGCCGGTTCTTCAGCACCCGG 300
Query 301 TCCAGAATGCGTCCTCGGGTCTAACCCTGGCTACGAACAATGTATTTCTAGGGTTAAAAA 360
|||||| |||||||| || ||||| || ||||||||| ||||| || |||||||||||||
Sbjct 301 TCCAGAGTGCGTCCTTGGTTCTAATCCAGGCTACGAAGAATGTCTTGCTAGGGTTAAAAA 360
Query 361 GGACCTCGTTGTGGCTACTTCTTTATCAGCCATGGTGGGTTCATTAGCAATGGGTTTGTT 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 GGACCTCGTTGTGGCTACTTCTTTATCAGCCATGGTTGGTTCATTAGCAATGGGTTTGTT 420
Query 421 AGCTAATCTCCCTTTTGGACTTGCTCCGGGTATGGGAGCCAACGCTTACATCGCATACAA 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 AGCTAATCTCCCTTTTGGACTTGCTCCGGGTATGGGAGCCAATGCTTACATCGCATACAA 480
Query 481 CGTTGTCGGGTTTCGTGGATCCGGTTCTATCTCTTATCATACCGCTATGGCCATTGTGCT 540
||| ||||| |||||||| || ||||| |||||||| ||||||||||||||||| |||||
Sbjct 481 CGTAGTCGGCTTTCGTGGCTCTGGTTCAATCTCTTACCATACCGCTATGGCCATCGTGCT 540
Query 541 CCTTGAAGGATGTGCCTTTCTCGCTGTGTCGGCTTTAGGACTCCGCGGGAAACTTGCTCG 600
||||||||||| || ||||| || || || ||||||||||||||||||||||| |||||
Sbjct 541 GCTTGAAGGATGCGCGTTTCTAGCGGTTTCCGCTTTAGGACTCCGCGGGAAACTAGCTCG 600
Query 601 TCTCATCCCTCAAACGGTGAGACTGGCCTGCGCGGTCGGTATAGGAATGTTCATTGCCTT 660
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 601 TCTCATCCCTCAAACGGTGAGACTGGCCTGCGCGGTTGGTATAGGAATGTTCATAGCCTT 660
Query 661 TGTAGGTTTACAAATGAACCAGGGCATTGGCCTCGTGGGACCGGATAAGTCAACTCTAGT 720
||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 TGTCGGTTTGCAGATGAACCAGGGTATTGGCCTCGTGGGACCGGATAAGTCAACTCTAGT 720
Query 721 GACATTAACCGCCTGCGCAGAGACGGATCCTGTCACTGGAGCTTGCTTAGGAGGTAAAAT 780
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 721 GACATTAACCGCTTGCGCAGAGACGGATTCTGTCACTGGAGCTTGCTTAGGAGGGAAAAT 780
Query 781 GAAGAGTCCTACGTTTTGGTTAGCCGTTGTCGGGTTTCTTATAACGAG-TTTCGGTCTAA 839
|||||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||
Sbjct 781 GAAGAGTCCTACGTTTTGGTTAGCCGTTGTAGGGTTTCTCATAACGAGCTTT-GGTCTAA 839
Query 840 TGAAGAACGTCAAAGGTAGTATGATTTACGGAATCGTGTTCGTCACGGCTATTTCTTGGA 899
|||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 840 TGAAGAACGTCAAAGGTAGTATGATTTATGGAATCGTGTTCGTTACGGCTGTTTCTTGGA 899
Query 900 TTAGAGGCACTCAAGTCACAATCTTTCCACACACTCCTCTTGGAGACTCAAACTACAACT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 TTAGAGGCACTCAAGTCACAATCTTTCCACACACTCCTCTTGGAGACTCAAACTATAACT 959
Query 960 ACTTCACAAAAATCGTTGACTTTCACAAGATCCAGTCAACTTTAGGAGCCATAAGCTTCA 1019
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 960 ACTTCACAAAAATCGTTGACTTTCACAAGATCCAGTCAACGTTAGGAGCTATAAGCTTCA 1019
Query 1020 CGGAGTTTAGAAAGAGCGAGGTTTGGGTCGCGTTCGCTACACTCTTCTACGTTGACCTTC 1079
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1020 CGGAGTTTAGAAAGAGCGAGGTTTGGGTTGCGTTCGCTACACTCTTTTACGTTGACCTCC 1079
Query 1080 TTGGTACGACCGGAGTACTCTACACAATGGCTGAGATCGGAGGATTCGTGGAAGATGGGA 1139
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1080 TTGGCACGACCGGAGTACTCTACACGATGGCTGAGATCGGAGGCTTCGTGGAAGACGGGA 1139
Query 1140 AGTTTGAAGGAGAGTACGCGGCGTACTTAGTAGACGCCGGCTCCTCCGTGGTGGGATCGG 1199
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1140 AGTTCGAAGGAGAGTACGCGGCTTACTTAGTGGACGCCGGCTCCTCCGTGGTGGGATCGG 1199
Query 1200 CGTTAGGTGTTACAACGACGGCGACTTTTGTGGAGTCTTCGGCGGGGTTGAAAGAAGGAG 1259
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1200 CGTTAGGGGTTACAACGACAGCGACTTTCGTGGAGTCTTCGGCGGGGTTGAAAGAAGGAG 1259
Query 1260 GGAAAACGGGGCTAACGGCCGTTATCGTAGG-GTTGTATTTCTTGGCGTCAATGTTTTTT 1318
|||||||||||||||| |||||||| ||||| | |||||||||||||||| ||||||||
Sbjct 1260 GGAAAACGGGGCTAACAGCCGTTATTGTAGGAG-TGTATTTCTTGGCGTCGATGTTTTTG 1318
Query 1319 ACGCCGTTAGTTACTAACGTGCCGAGGTGGGCGGTTGGACCGTCGTTGGTGATGGTTGGT 1378
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1319 ACGCCGTTAGTGACTAACGTGCCGAGGTGGGCGGTTGGGCCGTCGTTGGTGATGGTTGGT 1378
Query 1379 GTGATGATGATGGGAGTTGTAAAAGATATTAGATGGGGAGAGACTAAAGAAGCCGTGACA 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GTGATGATGATGGGAGTTGTAAAAGATATTAGATGGGGAGAGACTAAAGAAGCCGTGACG 1438
Query 1439 GCATTTGTAACGATCTTGCTTATGCCGTTGACTTATTCCATTGCTAATGGGATTATTGCT 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GCATTTGTAACGATCTTGCTTATGCCGTTGACTTATTCCATTGCTAATGGGATTATTGCT 1498
Query 1499 GGTATTGGTATATATCTTGCATTAAGCATGTACGATGTCGTTTTGGGAGTTGCAAAATGG 1558
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 1499 GGTATTGGTATATATCTTGCTTTAAGCATGTACGATGTCGTTTTGGGAGTTGCCAAGTGG 1558
Query 1559 CTTAACGGGGTTAGAAAACGGGTTATGAGAGAGCATAATCAAGTTTCTTCCGTCGCTACC 1618
||||| || ||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1559 CTTAATGGTGTTAGGAAACGGGTTATGAGAGAGCATAATCAAGTTTCCTCCGTTGCTACC 1618
Query 1619 GTCGAGATCGTTTGATTATTAACGATAACCGATGTCACAAAACTGGTTTTAGTGGTGTGT 1678
||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||
Sbjct 1619 GTCGAGATCGTTTGATTGTTGACGATAACCGATGTCACGAAACCGGTTTTAGTGGTGTGT 1678
Query 1679 GAGTGTGTACCGGAACTGGTGGAATTTTTCACATGGTCGGTCGTTGGATGACCATGCAAA 1738
| |||||||||||| |||||||| ||||||||||||||||||||||||||| | |||||
Sbjct 1679 G--TGTGTACCGGAAGTGGTGGAACTTTTCACATGGTCGGTCGTTGGATGACAAAGCAAA 1736
Query 1739 GACCCGTCATGAATGCTCTCGGTGtttttttttctctttcttttactttcttgttgtttt 1798
||||||||||||||||| | | |||| | |||| | ||||||||
Sbjct 1737 GACCCGTCATGAATGCT-T---TATTTTATGTTCT-T---------------GTTGTTTT 1776
Query 1799 ggtttagtttgCGTAGGAGAGAGTAGTGAAGTAACATTGGATGCATCAGCTGCCATGAAC 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GGTTTAGTTTGCGTAGGAGAGAGTAGTGAAGTAACATTGGATGCATCAGCTGCCATGAAC 1836
Query 1859 GTGTGTTTGATAATTTCTTGGCTGCTTGTGCATGCATTGTTTCTACTTTGTAGGGTTCTA 1918
|||| || | ||||| | ||||||||||||||||||||||| | |||||||||||
Sbjct 1837 GTGTATT-G-TAATT-CATGGCTGCTTGTGCATGCATTGTT-C------GTAGGGTTCTA 1886
Query 1919 TTGTTTCAACTAAATGCTTCTTTTGTTTGTAGCATATATGTCAATCAAAGACTTCTGAGT 1978
| | |||||| |||||||||||||||||||||||||| | |||||||||||||| || ||
Sbjct 1887 T-GCTTCAACAAAATGCTTCTTTTGTTTGTAGCATAT-T-TCAATCAAAGACTTTTGGGT 1943
Query 1979 CCTTCAGAAATTGC-AAATT 1997
|||||| |||||| |||||
Sbjct 1944 CCTTCATAAATTGTTAAATT 1963
> Ahg489598 jgi|Araly1|489598|fgenesh2_kg.6__2732__AT5G50300.1
Length=1704
Score = 1029 bits (557), Expect = 0.0
Identities = 877/1013 (87%), Gaps = 95/1013 (9%)
Strand=Plus/Plus
Query 985 CAAGATCCAGTCAACTTTAGGAGCCATAAGCTTCACGGAGTTTAGAAAGAGCGAGGTTTG 1044
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAA-ATCCAGTCAACGTTAGGAGCCATAAGCTTCACGGAGTTTAGAAAGAGCGAGGTTTG 839
Query 1045 GGTCGCGTTCGCTACACTCTTCTACGTTGACCTTCTTGGTACGACCGGAGTACTCTACAC 1104
||||||||||||||||||||| ||||||||||| || || ||||| |||||||||| ||
Sbjct 840 GGTCGCGTTCGCTACACTCTTTTACGTTGACCTCCTCGGCACGACTGGAGTACTCT--AC 897
Query 1105 AATGGCTGAGATCGGAGGATTCGTGGAAGATGGGAAG-TTTGAAGGAGAGTACGCGGCGT 1163
| | ||| || | | | |||| ||| | || | ||| || | ||| |
Sbjct 898 -A---C---GAT----GG---C-T-G-AGATAGGAGGCTTCG-TGGA-AG-A--CGG-G- 933
Query 1164 ACTTAGTAGACGCCGGCTCCTCCGTGGTGGGATCGGCGTTAGGTGTTACAACGACGGCGA 1223
| | |||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 934 A---A-TAGACGCCGGCTCCTCCGTGGTGGGATCGGCGCTAGG-GTTACAACGACGGCGA 988
Query 1224 CTTTTGTGGAGTCTTCGGCGGGGTTGAAAGAAGGAGGGAAAACGGGGCTAACGGCCGTTA 1283
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 989 CTTTCGTGGAGTCTTCGGCGGGGTTGAAAGAAGGAGGGAAAACAGGGCTAACGGCCGTTA 1048
Query 1284 TCGTAGG-GTTGTATTTCTTGGCGTCAATGTTTTTTACGCCGTTAGTTACTAACGTGCCG 1342
| ||||| | |||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1049 TAGTAGGAG-TGTATTTCTTGGCGTCGATGTTTTTGACGCCGTTAGTGACTAACGTGCCG 1107
Query 1343 AGGTGGGCGGTTGGACCGTCGTTGGTGATGGTTGGTGTGATGATGATGGGAGTTGTAAAA 1402
||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1108 AGGTGGGCGGTCGGGCCGTCGCTGGTGATGGTTGGTGTGATGATGATGGGAGTTGTAAAA 1167
Query 1403 GATATTAGATGGGGAGAGACTAAAGAAGCCGTGACAGCATTTGTAACGATCTTGCTTATG 1462
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1168 GATATTAGATGGGGAGAGATTAAAGAAGCCGTGACGGCATTTGTAACGATCTTGCTTATG 1227
Query 1463 CCGTTGACTTATTCCATTGCTAATGGGATTATTGCTGGTATTGGTATATATCTTGCAT-T 1521
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 1228 CCGTTGACTTATTCCATTGCTAATGGGATTATAGCTGGTATTGGTATATATCTTGC-TCT 1286
Query 1522 AAGCATGTACGATGTCGTTTTGGGAGTTGCAAAATGGCTTAACGGGGTTAGAAAACGGGT 1581
||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||
Sbjct 1287 AAGCATGTACGATGTCGTTTTGGGAGTTGCAAAGTTGCTTAATGGGGTTAGGAAACGGGT 1346
Query 1582 TATGAGAGAGCATAATCAAGTTTCTTCCGTCGCTACCGTCGAGATCGTTTGATTATTAAC 1641
|||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||
Sbjct 1347 TATGAGAGAGCATAATCAAGTTTCCTCCGTTGCTACCGTCTAGATCGTTTGATTATTGAC 1406
Query 1642 GATAACCGATGTCA-CAAAACTGGTTTTAGTGGTGTGTGAGTGTGTACCG-GAACTGGTG 1699
|||||||||||||| |||| | |||||||||||||||||||||| |||| || |||||
Sbjct 1407 GATAACCGATGTCATCAAACC-GGTTTTAGTGGTGTGTGAGTGT--ACCGTGAG-TGGTG 1462
Query 1700 GAATTTTTCACATGGTCGGTCGTTGGATGACCAT-GCAAAGACCCGTCATGAATGCTCTC 1758
||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1463 GAACTTTTCACATGGTCGGTCGTTGGATGACCAAAG-AAAGACCCGTCATGAATGCTCT- 1520
Query 1759 GGTGtttttttttctctttcttttactttcttgttgttttggtttagtttgCGTAGGAGA 1818
| || |||| || | ||||||||||||||||||||||||
Sbjct 1521 --T-TTATTTT--CT-T---------------GTTGTTTTGGTTTAGTTTGCGTAG---- 1555
Query 1819 GAGTAGTGAAGTAACATTGGATGCATCAGCTGCCATGAACGTGTGTTTGATAATTTCTTG 1878
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1556 ---TAGTGAAGTAACATTGGATGCATCAGCTGCCATGAACGTGTGTTTGATAATT-CATG 1611
Query 1879 GCTGCTTGTGCATGCATTGTTTCTACTTTGTAGGGTTCTATTGTTTCAACTAAATGCTTC 1938
|||||||||||||||||||||| || ||| | | |||||||||||
Sbjct 1612 GCTGCTTGTGCATGCATTGTTT-------GT----TTC-A-------A-CTAAATGCTTC 1651
Query 1939 TTTTGTTTGTAGCATATATGTCAATCAAAGACTTCTGAGTCCTTCAGAAATTG 1991
||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||
Sbjct 1652 TTTTGTTTGTAGCATATATTTCAGTCAAAGACTTTTGAGTCCTTCAAAAATTG 1704
Score = 636 bits (344), Expect = 0.0
Identities = 424/463 (92%), Gaps = 4/463 (1%)
Strand=Plus/Plus
Query 176 GCTGCGACCGCCACATTCCTCACCATGGCTTATATCATTACCGTGAACGCCAATATCTTA 235
||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 116 GCTGCAACCGCTACATTCCTCACCATGGCTTAT-TCATTACCGTCAACGCCAATATCTTA 174
Query 236 GCCGACTCCGGTGCCACTTGCTCCATCAACGACTGTTCCACCGTGGCCAGTTCTTCACCA 295
||||||||||| || ||||||||| || ||||||||||||||||| || |||||||||||
Sbjct 175 GCCGACTCCGGCGCGACTTGCTCCTTCCACGACTGTTCCACCGTGTCCGGTTCTTCACCA 234
Query 296 CCCGGTCCAGAATGCGTCCTCGGGTCTAACCCTGGCTACGAACAATGTATTTCTAGGGTT 355
|| ||||||||||||||||| || |||||||||||||||||| ||||| || ||||||||
Sbjct 235 CCGGGTCCAGAATGCGTCCTTGGTTCTAACCCTGGCTACGAAGAATGTCTTGCTAGGGTT 294
Query 356 AAAAAGGACCTCGTTGTGGCTACTTCTTTATCAGCCATGGTGGGTTCATTAGCAATGGGT 415
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 295 AAAAAGGACCTCGTTGTGGCTA---CTTTATCAGCCATGGTTGGTTCATTAGCAATGGGT 351
Query 416 TTGTTAGCTAATCTCCCTTTTGGACTTGCTCCGGGTATGGGAGCCAACGCTTACATCGCA 475
||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 352 TTGTTCGCTAATCTACCTTTTGGACTTGCTCCGGGTATGGGCGCCAACGCTCACATCGCA 411
Query 476 TACAACGTTGTCGGGTTTCGTGGATCCGGTTCTATCTCTTATCATACCGCTATGGCCATT 535
||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||
Sbjct 412 TACAACGTTGTCGGGTTTCGTGGCTCCGGTTCAATCTCTTACCATACGGCTATGGCCATC 471
Query 536 GTGCTCCTTGAAGGATGTGCCTTTCTCGCTGTGTCGGCTTTAGGACTCCGCGGGAAACTT 595
||||| ||||| ||||| || |||||||| ||||| |||||||||||||||||||||||
Sbjct 472 GTGCTGCTTGAGGGATGCGCATTTCTCGCGGTGTCTGCTTTAGGACTCCGCGGGAAACTG 531
Query 596 GCTCGTCTCATCCCTCAAACGGTGAGACTGGCCTGCGCGGTCG 638
||| ||||||||||||||||||||||||| |||||| ||||||
Sbjct 532 GCTTGTCTCATCCCTCAAACGGTGAGACTAGCCTGCACGGTCG 574
Score = 207 bits (112), Expect = 2e-52
Identities = 131/140 (94%), Gaps = 1/140 (1%)
Strand=Plus/Plus
Query 674 ATGAACCAGGGCATTGGCCTCGTGGGACCGGATAAGTCAACTCTAGTGACATTAACCGCC 733
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
Sbjct 575 ATGAACCAGGGCATTGGGCTCGTGGGACCGGAAAAGTCAACTCTAGTGACATTAACCG-C 633
Query 734 TGCGCAGAGACGGATCCTGTCACTGGAGCTTGCTTAGGAGGTAAAATGAAGAGTCCTACG 793
|| |||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 634 TGTGCAGAGACGGATTCTGTCACTGGAACTTGCTTGGGAGGGAAAATGAAGAGTCCTACG 693
Query 794 TTTTGGTTAGCCGTTGTCGG 813
|||||||||||||| |||||
Sbjct 694 TTTTGGTTAGCCGTCGTCGG 713
Score = 108 bits (58), Expect = 2e-22
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand=Plus/Plus
Query 844 GAACGTC-AAAGGTAGTATGATTTACGGAATCGTGTTCGTCACGGCTATTTCTTGGATTA 902
||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||||
Sbjct 713 GAACGTCAAAAGGTAGTATGATTTACGGAATCGTGTTTGTTACGGCTGTTTCTTGGATTA 772
Query 903 GAGGCACTCAA 913
|||||||||||
Sbjct 773 GAGGCACTCAA 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77361287595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5