BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50310.1
Length=2250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495090 jgi|Araly1|495090|fgenesh2_kg.8__906__AT5G50310.1 3424 0.0
> Ahg495090 jgi|Araly1|495090|fgenesh2_kg.8__906__AT5G50310.1
Length=2229
Score = 3424 bits (1854), Expect = 0.0
Identities = 2114/2239 (94%), Gaps = 20/2239 (1%)
Strand=Plus/Plus
Query 16 AAGGGCTAGTTTCATTGTAAACGCTA-ATCTTCGCTCTCAGCCTCCAAACACACATCAAA 74
|||||||| || |||||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 1 AAGGGCTACTTCCATTGTAATCGC-ACTTCTTCGCTCTCAGCCTCCAAACACACATCAAA 59
Query 75 CATGGGGAAGAAGACGAAGAAGCCTGGTAAAGGAAAGGAGAAAACTGAGAGAAAAACCGC 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CATGGGGAAGAAGACGAAGAAGCCTGGTAAAGGAAAGGAGAAAACTGAGAGAAAAACCGC 119
Query 135 CAAAGCGGATGAGAAGAAAGCTCGTCGAGAGGGCAAAAAGCTTTCTCCTGAAGATGACAT 194
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 120 CAAAGCCGATGAGAAGAAAGCTCGTCGAGAAGGCAAAAAGCTCTCTCCTGAAGATGACAT 179
Query 195 CGATGCCATTCTCTTGAATATTCAGAAGGAGGAGGCTAAGAAGAAAGAGGTCCATGTTGA 254
||| ||||||||| ||| || || |||||||||||||||||||||||||| ||||||||
Sbjct 180 CGACGCCATTCTCCTGAGCATACAAAAGGAGGAGGCTAAGAAGAAAGAGGTTCATGTTGA 239
Query 255 GGAAAATGTGGCAGCACCATCTCCTAGGTCAAACTGTTCGCTCACTATAAATCCTTTGAA 314
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 240 GGAAAATGTGCCAGCACCATCTCCTAGGTCAAACTGCTCGCTCACTATAAATCCATTGAA 299
Query 315 AGAGACTGAGTTGATACTCTATGGCGGTGAATTTTATAATGGCCAGAAGACATATGTATA 374
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 AGAGACTGAGTTGATACTCTATGGCGGTGAATTTTATAATGGCCAGAAGACCTATGTATA 359
Query 375 TGGTGATCTCTACCGATATGATGTAGAGAAGCAGGAGTGGAAGTTAGTTTCAAGCCCCAA 434
|||||||||||||||||||||||| || |||||||||||||||| | |||||||||| ||
Sbjct 360 TGGTGATCTCTACCGATATGATGTCGATAAGCAGGAGTGGAAGTCAATTTCAAGCCCGAA 419
Query 435 TAGTCCACCTCCTCGCAGCTCTCATCAAGCAGTTGCTTGGAAGAATTATCTCTACATATT 494
|||||||||||||| | ||||||||| |||||||||||||| |||||||||||||||||
Sbjct 420 CAGTCCACCTCCTCGTAACTCTCATCAGGCAGTTGCTTGGAAAAATTATCTCTACATATT 479
Query 495 TGGTGGTGAATTTACATCTCCGAATCAAGAGCGTTTCCATCACTACAAGGACTTTTGGAT 554
||| ||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||
Sbjct 480 TGGCGGTGAATTTACATCTCCAAATCAAGAGAGGTTCCACCACTACAAGGACTTTTGGAT 539
Query 555 GCTGGACGTGAAAACTAACCAATGGGAGCAGTTGAATTTGAAGGGATGTCCTAGTCCACG 614
|||||| ||||||||||| || |||||||| || ||||||||||||||||||||||||||
Sbjct 540 GCTGGATGTGAAAACTAATCAGTGGGAGCAATTAAATTTGAAGGGATGTCCTAGTCCACG 599
Query 615 TTCTGGTCATCGTATGGTATTATACAAGCACAAGATCATAATTTTTGGTGGCTTCTATGA 674
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 TTCTGGTCATCGCATGGTATTATACAAGCACAAGATTATAATTTTTGGTGGCTTCTATGA 659
Query 675 TACTCTACGTGAAGTAAGGTATTACAATGATCTCTATGTGTTTGACCTGGACCAATACAA 734
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CACTCTACGTGAAGTAAGGTATTACAATGATCTCTATGTGTTTGACCTGGACCAATACAA 719
Query 735 GTGGCAAGAAATAAAACCTAAGCCTGGTGCCATGTGGCCTACAGCTAGAAGTGGCTTCCA 794
|||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 720 GTGGCAAGAAATCAAACCTAAGCCTGGTGCCTTGTGGCCTACAGCTAGAAGCGGCTTCCA 779
Query 795 GTTTTTTGTTTATCAAGATGAGATATTCTTATATGGTGGTTATTCAAAAGAAGTCTCATC 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTTTTTTGTTTATCAAGATGAGATATTCTTATATGGTGGTTATTCAAAAGAAGTCTCATC 839
Query 855 CGAGAAGAGCTCTGAGAAAGGAATTGTTCATGCAGATTTGTGGTCTCTTGATCCCAGGAC 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGAGAAGAGCTCTGAGAAAGGAATTGTTCATGCAGATTTGTGGTCTCTTGATCCCAGGAC 899
Query 915 TTGGGAATGGAACAAAGTGAAGAAAATTGGGATGCCACCTAGCTCCCGTGCCGGATTTTC 974
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 900 TTGGGAATGGAACAAAGTGAAGAAAATTGGGATGCCTCCTAGCTCCCGTGCCGGCTTTTC 959
Query 975 GGTATGTGTCCACAAAAAGCGTGCTTTGCTGTTTGGGGGTGTCGTGGACATGGAAATGGA 1034
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGTATGTGTTCACAAAAAGCGTGCTTTGCTGTTTGGGGGTGTCGTGGACATGGAAATGGA 1019
Query 1035 AGGTGATGTAATGATGAGTTTATTCTTAAATGAACTCTATGGCTTCCAGTTAGATAATCG 1094
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1020 AGGTGATGTAATGATGAGTTTATTCTTAAACGAACTCTACGGCTTCCAGTTAGATAATCG 1079
Query 1095 TCGCTGGTACCCAATAGAGTTACGAAAAGAAAAATCATCAAAAGATAAGGCGAAGAAGAC 1154
||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||
Sbjct 1080 TCGCTGGTACCCAATAGAGTTACGAAAAGAAAAATCAACAAAAGACAAGGCAAAGAAGAA 1139
Query 1155 TTTGGAGGCAAAACCTGTGGCATCTAATAATGATGATGAGATGGATTCAACAGAAGAAGA 1214
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTTAGAGACAAAACCTGTGGCATCTAATAATGATGATGAGATGGATTCAACAGAAGAAGA 1199
Query 1215 TGAATCATTGGCCATGATTGAGCAAAC-TGATGGAGTAGGCTCCTCGGATGGGATATCTG 1273
|||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1200 TGAATCATCGGCCATGATTGAGCAA-CGTGATGGAGTAGGCTCCTCGGATGGGATATCTG 1258
Query 1274 AACGTATGGCAACAAATCTAACTGTTGATGGAAATAGGTCTGATAAAAGTAAGGCTCTAC 1333
| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1259 ATCGTATGGCAGCAGGTCTAACTGTTGATGGAAATAGATCTGATAAAAGTAAGGCTCTAC 1318
Query 1334 AGGGAGCAAAAACTAGACTAGATCCACAAGTTTCGGTCTCAGAGGAGGTTGTAAAACCAT 1393
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1319 AGGGAGCAAAAGCTAGACTAGATCCACAAGTTTCGGTCTCAGAGGAGGTTATAAAACCAT 1378
Query 1394 GTGGACGTATTAATTCCTGTATGGTCGTTGGGAAGGATACCTTATACATATATGGTGGCA 1453
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GTGGACGTATCAATTCTTGTATGGTCGTTGGGAAGGATACCTTATACATATATGGTGGCA 1438
Query 1454 TGATGGAGATAAAAGATAAAGAAGTTACTCTTGATGATTTGTATTCGCTTAATCTTAGCA 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1439 TGATGGAGATAAAAGATAAAGAAGTTACTCTTGATGATTTGTATTCGCTTAATCTAAGCA 1498
Query 1514 AACTTGACGAGTGGAAGTGTATCATTCCGACGACTGAAACTGAGTGGGTAGAAGTCTCAG 1573
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||
Sbjct 1499 AACTTGACGAGTGGAAGTGTATCATTCCGGCGACTGAAACTGAGTGGGTGGAAGTATCAG 1558
Query 1574 ATGACGAAGAAGGGGACGAAGACGACgatgaagatgatagtgaagatgaaggaaacagtg 1633
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1559 AGGACGAAGAAGGGGACGAAGACGAAGATGAAGATGATAGCGAAGATGAAGGAAACAGTG 1618
Query 1634 aagagtctgatgatgaagatgacgatgaagaagtAGAGGCAATGGATGTTGATGGATCAG 1693
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 AAGAGTCTGATGA--A-GATGACGATGAAGAAGTAGAGGCAATGGATGTTGATGGATCAG 1675
Query 1694 TGAAAGTGGGAGTTGTTGTTGCAATGATAAAAGGACAAGGAAAATCTCTCCGAAGAAAAG 1753
||||||| |||| ||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1676 TGAAAGTTGGAGAAGTTGTTGCAATGATAAAAGGAGAAGGAAAATCCCTCCGAAGAAAAG 1735
Query 1754 AGAAACGAGCTCGGATTGAACAGATTAGAGCTAATCTAGGACTTTCAGATTCACAGAGAA 1813
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 AGAAACGAGCTCGGATAGAACAGATTAGAGCTAATCTAGGACTTTCAGATTCACAGAGAA 1795
Query 1814 CCCCAGTGCCTGGAGAAACTTTGAAGGATTTCTATAAGCGCACAAATATGTACTGGCAAA 1873
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1796 CCCCAGTGCCTGGAGAAACTTTGAAGGATTTCTATAAGCGTACAAATATGTACTGGCAAA 1855
Query 1874 TGGCTGCCTACGAGCATACCCAACATACTGGCAAGGAGCTGCGAAAGGATGGTTTTGATC 1933
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1856 TGGCTGCCTACGAGCATACCCAACATACCGGCAAGGAGCTGCGGAAGGATGGTTTTGATC 1915
Query 1934 TTGCAGAAACTCGGTATCTTGAACTCAAACCCATTCTAGATGAGTTGGCAATACTTGAGG 1993
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 TCGCAGAAACTCGGTATCTGGAACTCAAACCCATTCTAGATGAGTTGGCAATACTTGAGG 1975
Query 1994 CCGAGCAAAAGGCTGAAGAAGCAGAAGGACCTGAAGCTAGTAGTAGCTCTAGAAAAGGAG 2053
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1976 CCGAGCAAAAGGCTGAAGAAGCAGAAGGACCTGAAGCAAGTAGTAGCTCTAGAAAAGGAG 2035
Query 2054 GTATTGCAAAGAAGAAGAGATAAAGCTTTTGCAGTTTT-GAA-TCGCTTTAGTTATGA-A 2110
|||||||||||||||||||||||||||||||||| | | | | || ||||| |
Sbjct 2036 GTATTGCAAAGAAGAAGAGATAAAGCTTTTGCAGCCTCAGCAGTAA-TT--GTTATCTCA 2092
Query 2111 GCTGT-AACACTTTAAAGAAAGAGTGAAAATTTTGAGGAAGAA-TGCAAATTCCTACATG 2168
| | | || |||| |||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2093 GTTTTGAAT-CTTTTTAGAAAGAGTGAAAATTTTGAGGAA-AACTGCAAATTCCTACATG 2150
Query 2169 AACTATGGCGTTTTGTTATGA-A-A-TACATACACGAACAACTTGTGTTGATTCCTGCAT 2225
|| ||| || |||||||||| | | ||||||| ||||| |||||||||||||||| |||
Sbjct 2151 AATTATAACGATTTGTTATGATACAATACATACCCGAACGACTTGTGTTGATTCCTACAT 2210
Query 2226 GAACTAAATTATTTTAGCT 2244
|||||||| ||||||||||
Sbjct 2211 GAACTAAACTATTTTAGCT 2229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84712704880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5