BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50320.1
Length=2311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495092 jgi|Araly1|495092|fgenesh2_kg.8__908__AT5G50320.1 3042 0.0
Ahg952385 jgi|Araly1|952385|scaffold_66400002.1 767 0.0
> Ahg495092 jgi|Araly1|495092|fgenesh2_kg.8__908__AT5G50320.1
Length=2203
Score = 3042 bits (1647), Expect = 0.0
Identities = 1801/1874 (96%), Gaps = 15/1874 (1%)
Strand=Plus/Plus
Query 28 GTTTTGGTGACGATGGCGACGGCGGTAGTGATGAACGGCGAGCTGAAAAAGCAACCTCGG 87
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTTTTGCGACGATGGCGACGGCGGTAGTGATGAACGGCGAGCTGAAAAAGCAACCTCGG 60
Query 88 CCAGGTAAAGGCGGCTATCAGGGCCGTGGATTAACTGAAGAAGAAGCTCGAGTTCGCGCC 147
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 61 CCAGGTAAAGGCGGCTATCAGGGCCGTGGATTAACTGAAGAAGAAGCTAGAGTCCGCGCT 120
Query 148 ATATCGGAGATTGTTAGCACCATGATTGAGCGTTCACACCGCAACGAGAATGTTGACCTA 207
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 ATATCGGAGATTGTCAGCACCATGATTGAGCGCTCACACCGCAACGAGAATGTTGACCTA 180
Query 208 AACGCAATTAAAACCGCCGCTTGCCGGAAATACGGCCTAGCACGTGCGCCTAAGCTCGTG 267
|||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||
Sbjct 181 AACGCAATTAAAACCGCCGCTTGCCGGAAATACGGCTTAGCGCGTGCGCCAAAGCTTGTG 240
Query 268 GAGATGATTGCTGCGCTTCCTGATTCAGAGAGAGAGACTCTTCTCCCGAAGCTCCGTGCC 327
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGATGATCGCTGCGCTTCCTGATTCAGAGAGAGAGACTCTTCTCCCGAAGCTCCGTGCT 300
Query 328 AAACCGGTTCGAACAGCTTCAGGGATCGCCGTTGTGGCGGTTATGTCGAAGCCTCATAGG 387
|||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 301 AAACCGGTCCGAACAGCTTCAGGAATCGCAGTCGTGGCGGTTATGTCGAAGCCTCATAGG 360
Query 388 TGCCCGCATATAGCTACGACGGGGAATATATGCGTTTATTGTCCCGGTGGACCTGACTCT 447
|| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 361 TGTCCGCATATAGCTACGACGGGTAATATATGTGTGTATTGTCCCGGTGGACCTGACTCT 420
Query 448 GACTTTGAGTATAGTACTCAGTCTTACACTGGATATGAGCCTACCAGCATGCGAGCTATT 507
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 421 GACTTTGAGTATAGTACTCAGTCTTACACTGGATACGAGCCCACCAGTATGCGAGCTATT 480
Query 508 CGAGCCAGGTACAATCCATATGTTCAGGCAAGAAGCAGGATAGATCAGCTGAAGCGGTTG 567
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGAGCCAGGTACAATCCATACGTTCAGGCAAGAAGCAGGATAGATCAGCTGAAGCGGTTG 540
Query 568 GGTCACAGTGTAGATAAGGTTGAGTTCATTTTGATGGGAGGTACTTTCATGTCACTGCCT 627
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGTCACAGTGTAGATAAGGTTGAGTTCATTTTGATGGGAGGTACTTTCATGTCACTGCCA 600
Query 628 GCTGAGTATCGGGATTTCTTCATACGGAATCTTCATGATGCTTTATCAGGACACACTTCT 687
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTGAGTACCGGGATTTCTTCATACGGAATCTTCATGATGCTTTATCAGGACACACTTCT 660
Query 688 GCCAACGTTGAAGAGGCAGTTGCTTACTCTGAACATAGTGCAACTAAATGCATTGGGATG 747
||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 661 GCCAATGTTGAAGAAGCAGTTGCATATTCTGAACATAGTGCAACTAAATGCATTGGGATG 720
Query 748 ACAATTGAAACGAGGCCAGATTACTGCCTTGGACCTCATTTACGACAAATGCTGATTTAC 807
|| || ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 721 ACGATAGAAACGAGGCCAGATTACTGCCTTGGACCTCATCTACGACAAATGCTGACTTAC 780
Query 808 GGTTGCACCCGGCTAGAGATAGGTGTCCAGAGCACATATGAAGATGTTGCCCGTGACACA 867
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 GGTTGCACCCGGCTGGAGATAGGTGTCCAGAGCACATACGAAGATGTTGCCCGTGACACA 840
Query 868 AATAGAGGTCATACTGTTGCTGCTGTAGCTGACTGCTTCTGCTTGGCTAAAGATGCTGGT 927
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 841 AATAGAGGCCATACTGTTGCTGCGGTAGCCGACTGCTTCTGCTTGGCTAAAGATGCTGGT 900
Query 928 TTCAAGGTGGTTGCACATATGATGCCTGATCTTCCTAATGTTGGGGTTGAGAGAGACATG 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTCAAGGTGGTTGCACATATGATGCCTGATCTTCCTAATGTTGGGGTTGAGAGAGACATG 960
Query 988 GAAAGTTTCAAGGAGTTTTTCGAGAGCCCATCTTTTAGAGCAGATGGGTTAAAAATATAT 1047
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAAAGTTTCAAGGAATTTTTCGAGAGCCCATCTTTTAGAGCAGATGGGTTAAAAATATAT 1020
Query 1048 CCCACCCTTGTGATCCGTGGAACTGGACTTTATGAACTATGGAAAACTGGGAGGTACCGA 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CCCACCCTTGTGATCCGTGGAACTGGACTTTATGAACTATGGAAAACTGGGAGGTACCGA 1080
Query 1108 AATTATCCACCTGAGCAGCTTGTGGATATAGTTGCAAGGATTCTCTCCATGGTACCTCCA 1167
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AACTATCCACCTGAGCAGCTTGTGGATATAGTTGCAAGGATTCTCTCCATGGTACCTCCA 1140
Query 1168 TGGACACGTGTATATAGAGTTCAGCGTGATATTCCTATGCCTCTGGTTACGTCAGGGGTA 1227
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGGACACGTGTTTATAGAGTTCAGCGTGATATTCCTATGCCTCTGGTTACGTCAGGGGTT 1200
Query 1228 GAAAAAGGAAATCTTCGTGAACTGGCTCTAGCCAGAATGGATGACTTGGGCCTTAAATGC 1287
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1201 GAAAAAGGAAATCTTCGTGAACTGGCTTTAGCCAGAATGGATGACTTGGGCCTTAAATGC 1260
Query 1288 CGTGATGTCCGTACTCGTGAAGCTGGAATTCAGGACATTCATCATAAAATTAAGCCAGAA 1347
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CGTGATGTTCGTACTCGTGAAGCTGGAATTCAGGACATTCATCATAAAATTAAGCCAGAA 1320
Query 1348 CAAGTAGAGCTTGTGCGTCGTGATTACACTGCCAATGAAGGTTGGGAGACGTTCCTTTCT 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CAAGTAGAGCTTGTGCGTCGTGATTACACTGCCAATGAAGGTTGGGAGACGTTCCTTTCT 1380
Query 1408 TATGAAGATACACGCCAGGACATTCTTGTTGGATTGCTACGTTTGCGAAAATGCGGGAAG 1467
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1381 TATGAAGATACACGCCAGGACATTCTTGTTGGGTTGCTACGATTGCGAAAATGCGGGAAG 1440
Query 1468 AATGTAACGTGTCCAGAACTCATGGGAAAGTGTTCTGTTGTCCGTGAGCTTCATGTATAC 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AATGTAACGTGTCCAGAACTCATGGGAAAGTGTTCTGTTGTCCGTGAGCTTCATGTATAC 1500
Query 1528 GGAACAGCTGTACCAGTTCATGGTCGAGATGCTGATAAGTTGCAACATCAGGGCTATGGT 1587
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1501 GGAACAGCTGTACCAGTTCATGGTCGAGAGGCTGATAAGTTGCAACATCAGGGATATGGT 1560
Query 1588 ACACTTCTGATGGAAGAAGCAGAGAGGATTGCTAGAAGAGAACATCGATCTAACAAAATC 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 ACACTTCTGATGGAAGAAGCAGAGAGGATTGCTAGAAGAGAACATCGATCTAACAAAATC 1620
Query 1648 GGTGTGATTTCTGGTGTAGGAACCAGACATTACTACAGAAAGTTGGGTTATGAATTGGAA 1707
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1621 GGTGTGATTTCTGGTGTAGGAACCCGACATTACTACAGAAAGTTGGGTTATGAATTGGAA 1680
Query 1708 GGTCCTTACATGGTGAAGCATCTTCTTTGAAATTA-TGTTTACTTAAAAACCAAATTCGT 1766
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1681 GGTCCTTACATGGTGAAGCATCTTCTTT-AAATTTCTGTTTACTTAAAAACCAAATTCGT 1739
Query 1767 AAAATCTTTATGTTGAACTAGTGAGATTAATCCCTT-G--TGGTATCATTTT-GCTCTTT 1822
||| |||| ||||||||||||||||| ||||| | |||||||||||| |||||||
Sbjct 1740 AAAC-CTTTGTGTTGAACTAGTGAGAT----CCCTTTGAGTGGTATCATTTTTGCTCTTT 1794
Query 1823 AAA-TTTTCATAGTCAAAAAGTTGAGAAAACGGCTAATTCCTTCACGAACTATGGCGAT- 1880
||| |||| |||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1795 AAACTTTT-ATAGTCAAAAAGTTGAGAAAACGGTTAATTCCTAAACGAACTATGGCGATC 1853
Query 1881 TTTGTAAGATTAAT 1894
||| ||||| ||||
Sbjct 1854 TTT-TAAGAATAAT 1866
Score = 387 bits (209), Expect = 3e-106
Identities = 254/274 (93%), Gaps = 10/274 (4%)
Strand=Plus/Plus
Query 2040 AAGATTGACTTGGCTCTTCGTTGTAGTCTAGATCCATGAACTCAAATCCTTCATCTGATG 2099
||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1938 AAGATTGACTTGGTTCTTCGTTGTAGTCTAGAGCCATAAACTCAAATCCTTCATCTGATG 1997
Query 2100 TGTTCCGATTCTTCGGTCTTATATACTCCACCCCAACATTACCACACTTCCTCGTATTGT 2159
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1998 TGTTGCGATTCTTAGGTCTTATATACTCCACCCCTACATTACCACACTTCCTCGTGTTGT 2057
Query 2160 GTCCAATTACACCACATCTGCCACAACGAACAATCCTTCCCTCTCTCGTAACTTTGGTTA 2219
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2058 GTCCAATTAGACCACATCTGCCACAGCGAACAATCCTTCCCTCTCTCGTAACTTTGGTTA 2117
Query 2220 CCTTCACTGGAGGAGACTCTTGCACTTCC-TTTTTCCTTTT-AGGATTCTTACTTCTCTC 2277
|||||||||||| | |||||||||| || |||||| |||| || |||||||||||||||
Sbjct 2118 CCTTCACTGGAG-A--CTCTTGCACTCCCCTTTTTC-TTTTCAG-ATTCTTACTTCTCTC 2172
Query 2278 CTCATGAAACTCCACAGAAGAATCAGGGCTTGAG 2311
|||||||||||||||||||||||||||||||
Sbjct 2173 ---ATGAAACTCCACAGAAGAATCAGGGCTTGAG 2203
> Ahg952385 jgi|Araly1|952385|scaffold_66400002.1
Length=525
Score = 767 bits (415), Expect = 0.0
Identities = 474/503 (94%), Gaps = 2/503 (0%)
Strand=Plus/Plus
Query 16 TTTTGGT-CTGAGGTTTTGGTGACGATGGCGACGGCGGTAGTGATGAACGGCGAGCTGAA 74
||||||| |||||| ||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 1 TTTTGGTCCTGAGG-TTTCGCGACGATGGCGACGGCGGTAGTGATGAACGGCGAGTTGAA 59
Query 75 AAAGCAACCTCGGCCAGGTAAAGGCGGCTATCAGGGCCGTGGATTAACTGAAGAAGAAGC 134
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 AAAACAACCTCGGCCAGGTAAAGGCGGCTATCAGGGCCGTGGATTAACTGAGGAAGAAGC 119
Query 135 TCGAGTTCGCGCCATATCGGAGATTGTTAGCACCATGATTGAGCGTTCACACCGCAACGA 194
| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 TAGAGTTCGCGCTATATCGGAGATTGTTAGCACCATGATTGAGCGCTCACACCGCAACGA 179
Query 195 GAATGTTGACCTAAACGCAATTAAAACCGCCGCTTGCCGGAAATACGGCCTAGCACGTGC 254
||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||
Sbjct 180 GAATGTTGACCTAAACGCAATCAAAACCGCCGCTTGCCGGAAATACGGCTTAGCGCGTGC 239
Query 255 GCCTAAGCTCGTGGAGATGATTGCTGCGCTTCCTGATTCAGAGAGAGAGACTCTTCTCCC 314
|| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACCAAAGCTTGTGGAGATGATCGCTGCGCTTCCTGATTCAGAGAGAGAGACTCTTCTCCC 299
Query 315 GAAGCTCCGTGCCAAACCGGTTCGAACAGCTTCAGGGATCGCCGTTGTGGCGGTTATGTC 374
|||||||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||
Sbjct 300 GAAGCTCCGTGCTAAACCGGTCCGAACAGCTTCAGGAATCGCAGTCGTGGCGGTTATGTC 359
Query 375 GAAGCCTCATAGGTGCCCGCATATAGCTACGACGGGGAATATATGCGTTTATTGTCCCGG 434
||||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||
Sbjct 360 GAAGCCTCATAGGTGTCCGCATATAGCTACGACGGGTAATATATGTGTGTATTGTCCCGG 419
Query 435 TGGACCTGACTCTGACTTTGAGTATAGTACTCAGTCTTACACTGGATATGAGCCTACCAG 494
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 420 TGGACCTGACTCTGACTTTGAGTATAGTACTCAGTCTTACACTGGATACGAGCCCACCAG 479
Query 495 CATGCGAGCTATTCGAGCCAGGT 517
||||||||||||||||||||||
Sbjct 480 TATGCGAGCTATTCGAGCCAGGT 502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87036209825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5