BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50335.1
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495095 jgi|Araly1|495095|fgenesh2_kg.8__911__AT5G50335.1 448 3e-125
> Ahg495095 jgi|Araly1|495095|fgenesh2_kg.8__911__AT5G50335.1
Length=470
Score = 448 bits (242), Expect = 3e-125
Identities = 279/296 (94%), Gaps = 5/296 (2%)
Strand=Plus/Plus
Query 73 TCCTACACTAAATTCTCTGAGCTCTTT-CACCAAAAAGAGAATGGTGTGCAGAGCAGAAG 131
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 38 TCCTACACTAAATTCTCTGAGCTCTTTGCACCAAAAAGAGAATGGTGTGCAGAGCAGAAG 97
Query 132 AAGCAATGAAGCAGAGAGGGATCATAAAGAGATGTAAAGAAGATGATCGTCATCAGAAGA 191
||||||||||||| |||| ||| || |||||||| ||||||||||||||| |||||||||
Sbjct 98 AAGCAATGAAGCAAAGAGAGATGATCAAGAGATGCAAAGAAGATGATCGTTATCAGAAGA 157
Query 192 AGAAGATGCAATCAATCACAAATTGCAACAAAGAAAAAAGTTGCAGATTCAAGCGAAGCA 251
||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 158 AGAAGATACAATCAATCACTAATTGCAACAAAGAAAAAGGTTGCAGATTCAAGCGAAGCA 217
Query 252 CTAGTAATCTCGATAACGATGGAGCTTCCTCAGCCATCTTCCTCCTAGCTTGCATCGCCT 311
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 CTAGTAAGCTCGACAACGATGGAGCTTCCTCAGCCATCTTCCTCCTAGCTTGCATCGCCT 277
Query 312 GCTCATCCTTCTCTTATCATCTCTAACTATCAACATATATATCTTAGTTGTAACAG 367
|||||||||||||||||||||||||||||||||||||| | | | ||||||||||
Sbjct 278 GCTCATCCTTCTCTTATCATCTCTAACTATCAACATATCT-T-T--GTTGTAACAG 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23216856453
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5