BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50340.1
Length=2083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg359214 jgi|Araly1|359214|fgenesh1_pg.C_scaffold_58000003 931 0.0
> Ahg359214 jgi|Araly1|359214|fgenesh1_pg.C_scaffold_58000003
Length=582
Score = 931 bits (504), Expect = 0.0
Identities = 557/583 (96%), Gaps = 2/583 (0%)
Strand=Plus/Plus
Query 1284 ATGGCAAACTCAGGACTTGAAGTGGTCTCAAACCCAAGTGGCATATATCTTAGTCAACAG 1343
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCAAACTCAGGACTTGAAGTAGTCTCAAACCCTAGTGGCATATATCTTAGTCAACAG 60
Query 1344 AACCCAGATTCAGATGTTTTAGCTGGATTAGCTGTA-GCAGTTGTTATGGATGGATCTCG 1402
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 61 AACCCAGATTCAGATGTTTTAGCTGGATTAGCTG-ACGCAGTTGTTATGGATGGATCTCG 119
Query 1403 GAGTTTCCTAATTGAAGTTCAGGCATTGTGTTCCCCTGGCTCAACAGTTTCAAGGCATGT 1462
|||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 120 GAGTTTCCTAATTGAAGTTCAGGCGTTGTGTTCGCCTGGCCCAACAGTTTCAAGGCATGT 179
Query 1463 CAATGGTGTTCAAGCAAGCAGAGCTGACATGATAATTGCAGTTCTTATGAAGCAAGCTGG 1522
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 CAATGGTGTTCAAGCAAGCAGAGCTGATATGATAATTGCAGTTCTTATGAAGCAAGCTGG 239
Query 1523 TCTTAGAATTCAGGAAAATGGGATTTTTCTGAACGTCGCTAACGGAATGGCTCTTTCTGA 1582
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTTAGAATACAGGAAAATGGGATTTTTCTGAACGTCGCTAACGGAATGGCTCTTTCTGA 299
Query 1583 GACTGCTGGTGACCTTGCAATAGCAGCAGCTATTTGTAGCAGTTTCTTGGAGTTTCCAAT 1642
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 GACTGCTGGCGACCTTGCAATAGCAGCAGCAATTTGTAGCAGTTTCTTGGAGTTTCCAAT 359
Query 1643 TCCTCACGGTGTAGCATTCATTGGCGAGATTGGTCTTGGGGGAGAGGTTCGCACGGTACC 1702
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 360 TCCTCACGGTGTAGCATTCATTGGTGAGATTGGTCTTGGGGGCGAGGTTCGCACGGTACC 419
Query 1703 AAGAATGGAGAAAAGGGTGAGTACAGTGGCAAAGCTTGGGTTTAACAAATGTGTAGTTCC 1762
|||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |||||
Sbjct 420 AAGAATGGAGAAAAGGGTAAGTACATTGGCAAAGCTAGGGTTTAACAAATGTGTGGTTCC 479
Query 1763 TAAATCAGTGGAGGAATCACTTAAGGCGTTGAGTTTGAAAGAGATTGAGATAATCGGATG 1822
|||||||||||||| || || |||||| | | |||||||||||||||||||||||||||
Sbjct 480 CAAATCAGTGGAGGAGTCGCTAAAGGCGCTAAATTTGAAAGAGATTGAGATAATCGGATG 539
Query 1823 CAAGAATCTGAAAGAGTTAATCAATGCTGTGTTTAAGGGATAA 1865
||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 540 CAAGAATCTGAAAGAGTTAATTAATGCTGTGTTTAGGGGATAA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78351633965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5