BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50345.1
Length=391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916643 jgi|Araly1|916643|Al_scaffold_0008_1394 374 3e-103
Ahg949563 jgi|Araly1|949563|scaffold_801450.1 135 2e-31
> Ahg916643 jgi|Araly1|916643|Al_scaffold_0008_1394
Length=264
Score = 374 bits (202), Expect = 3e-103
Identities = 241/260 (93%), Gaps = 2/260 (1%)
Strand=Plus/Plus
Query 9 ATCATCACATTTCGCTATCTTTTGCATCATCCTCGTTTCATTGTTTGCTCTTCAACAATA 68
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 6 ATCATCACATTTCGCTATCTTTTGCATCATCATCGTATCATTGTTTGCTCTTCATGAATG 65
Query 69 TGAAATTGGAAACATGGAAGAGAATCTGAACGCCAGCAAAATAGTTGTATATCTATCACC 128
|||||||||||||||||| |||||||| ||||| |||||||||||| |||||||||||||
Sbjct 66 TGAAATTGGAAACATGGAGGAGAATCTTAACGCAAGCAAAATAGTTATATATCTATCACC 125
Query 129 GTGTGTTAGAAAACGTTGTAGCTTTAGCTTATTCAAGAACTGTCATTGCTGCAGAGGGAA 188
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 126 GTGTGTTCGAAAACGTTGTAGCTTTAGCTTATTCAAGAATTGTCATTGCTGCAGAGGGAA 185
Query 189 GTATCAC-TTTTGTTCAAAGAACATAAAAGTATGCGAGAAGGAGTGTCTTAGACTTAACC 247
|||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 186 ATATC-CGTTTTGTTCAAAGAACATAAAAGTATGCGAGAAGGAGTGTCTAAGACTTAACC 244
Query 248 CACCGCGACCTCTGCCATAG 267
|||| | |||| |||||||
Sbjct 245 CACCTCCACCTAGGCCATAG 264
> Ahg949563 jgi|Araly1|949563|scaffold_801450.1
Length=293
Score = 135 bits (73), Expect = 2e-31
Identities = 223/289 (77%), Gaps = 35/289 (12%)
Strand=Plus/Plus
Query 7 TCATCATCACATTTCGCTATCTTTTGCATCATCCTCGTTTCAT-TGTTTGCTC-TTCAAC 64
||||||||||||||||||||||||||||||||| ||||||| | | |||| || ||||
Sbjct 28 TCATCATCACATTTCGCTATCTTTTGCATCATCTTCGTTTCCTCT-TTTG-TCCTTCATG 85
Query 65 AATATGAAATTGGAAACATGGAAGAGAATCT-GAACGCCAGCAAAATAGTTGTATATCTA 123
||| ||||| | ||||| ||| || | || ||| |||||||||||| ||||| |
Sbjct 86 AATGTGAAA----A--CATGGTGGAGGATATTGA-CGCAAGCAAAATAGTTATATATA-A 137
Query 124 -TCACCGTGTGTTAGAAAACGTTGTAGC---TTTAGCTTATTCAAG-AACTGTCATTGCT 178
|||||||||||| ||| |||||| ||| |||||||| || | | || |||||||| |
Sbjct 138 GTCACCGTGTGTTCGAACACGTTGCAGCAGCTTTAGCTTCTT-ATGGAATTGTCATTGTT 196
Query 179 GCAGAGGGAAGTATCACTTTTGTTCAAAGAACATAAAAGTATGCGAGA-AGGAGTGTCTT 237
||||||| |||| | | || ||| ||||||||||||||| || |||||||
Sbjct 197 GCAGAGGAAAGT-T---T-------AA-GAAAATAAAAGTATGCGAGGCAG-AGTGTCTA 243
Query 238 AGACTTAACCCACCGCGACCT-CTGCCATAGATATGGAAAACTTGCAAA 285
||||||||||| ||| | || || | |||||| | ||||| |||||||
Sbjct 244 AGACTTAACCCGCCGATAACTTCTTC-ATAGATCTTGAAAATTTGCAAA 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14003101163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5