BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50350.1
Length=2045
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331439 jgi|Araly1|331439|fgenesh1_pm.C_scaffold_8000782 2555 0.0
Ahg887587 jgi|Araly1|887587|Al_scaffold_0058_3 701 0.0
> Ahg331439 jgi|Araly1|331439|fgenesh1_pm.C_scaffold_8000782
Length=1767
Score = 2555 bits (1383), Expect = 0.0
Identities = 1649/1775 (93%), Gaps = 28/1775 (2%)
Strand=Plus/Plus
Query 70 ATGGCGACTTCTGCTTTCAATTCAACGATGAAGCGAACGACGTCTCTAGCCAAATCCTCC 129
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCGACTTCTGCTTTCAATTCAACGATGAAGCGAACGACGTCGCTAGCCAAATCCTCA 60
Query 130 GAGAGTGGCGACGACTCTTCTTACTCTACACGGAGGTCAGCTTCTAGGAGACACCGGAGT 189
|||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 61 GAGAGTGGCGACGATTCTTCTTACTCTACACGGAGGTCTGCTTCGAGAAGACACCGGAGT 120
Query 190 TTGAGCCGTTTCTCTCACCGCATGCCGGATCCAGACATTGAAGTGACTCCGATGAGGAAG 249
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 TTGAGCCGTTTCTCTCACCGCATGCCGGATCCAGACATCGAAGTGACTCCGATGAGGAAG 180
Query 250 GGAAAGTTTGTTAACACCGTGAGAGGTTCTGGATTCGGTGAAATTAGCCTCGATGATTTA 309
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 181 GGAAAGTTTGTTAACACCGTGAGAGGTTCTGGATTCGGTGAAATTAGTCTTGATGATTTA 240
Query 310 GCTGTCGAGTTTTTTGAATCGTTCTCCGGCGAGAGCGAGATTAGTAGCGGAGAAAGAGGA 369
||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 241 GCTGTTGAGTTTTTTGAATCGTTTTCCGGTGAGAGTGAGATTAGTAGCGGAGAAAGAGGA 300
Query 370 CGATCTGGTTTAAGAAATTCCGGCGGCGGTA-C--C----G-G-CGGAGAGGT-TACGAA 419
||||||||||||||||| || || || |||| | | | | |||||||| | |||
Sbjct 301 CGATCTGGTTTAAGAAAGTCTGGTGGTGGTAGCGGCGGAGGTGAAGGAGAGGTGGA-GAA 359
Query 420 TTCGCAAAGGAGGGGAAGGTCTGTTTCTAGGGTTGGTTCTGGTGGTGGTAACGGTGGTTT 479
||| | |||||||||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 360 TTCTCTAAGGAGGGGACGGTCTGTTTCTAGGGTTTGTTC---TGGTGGTAACGGTGGTTT 416
Query 480 ACGGAGGTTAGATGCTGATACTGAAAGCTCGAGGCGACGGAGGTCGTTGTCTAGACAGCC 539
||||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 417 ACGGAGGTTGGGTGCTGATACTGAAAGCTCGAGACGGCGGAGGTCGTTGTCTAGACAGCC 476
Query 540 GGCTAGTAATAATCGTGGTGGTTCAAG-TAAGGTTGATTCGGTGAGCAACAATTCGAGCC 598
|| |||||||||||||||||||| || || ||| ||| |||||||||| ||||||||||
Sbjct 477 GGAAAGTAATAATCGTGGTGGTTC-AGTTAGGGTAGATCCGGTGAGCAATAATTCGAGCC 535
Query 599 GGCGGAGGTCGGTTTCTAGACAACCGAATGAGAGGGTTAAGGTC-GAGAACAGTGGTGGT 657
||||||||||||||||||||||||||| |||| |||||||| | |||||| ||||||||
Sbjct 536 GGCGGAGGTCGGTTTCTAGACAACCGAGGGAGAAGGTTAAGG-CAGAGAACGGTGGTGGT 594
Query 658 GTAATTGAGGGAGATCGTGAGAACGCGAATTCGCGGCGACGACGGTCGCTTTCTGTTGTC 717
| ||||| ||||||| |||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 595 GCAATTGGGGGAGATTGTGAAAACGCGAATTCACGGCGGCGACGGTCGCTTTCTGTTGTC 654
Query 718 CGTCGTCGGATTGAGAATTCTGAGAGTGATGTAGATCAAGTTCAGTATTCAAGCAGTTCA 777
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 655 CGTCGTCGGATTGAGAATTCGGAGAGTGATGTAGATCAAGTTCAGTATTCAAGCAGTTCA 714
Query 778 AGGGATGTGAAGAGCTTCATGAGTGGAAAGAGTCAAAATAGTGGTTCTCAGAAATCTGCT 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 715 AGGGATGTGAAGAGCTTCATGAGTGGAAAGAGTCAAAATAGTGGTTCTCAGAAATCTG-T 773
Query 838 G-CTTCAGATAATAGACAAGGTCTTAGGAGGTCTTTTAGCCAGAATCCAATCAAATACCA 896
| ||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 774 GGCTTCAGATAATAGACAAGGTCTTAGGAGGTCTTTTAGTCAAAATCCAGTCAAATACCA 833
Query 897 TGATGGCTACTCTAGCCAGTCTTCTGCAGTCACAGATGATGAAGGAAAGGATTCCAGCTC 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TGATGGCTACTCTAGCCAGTCTTCTGCAGTCACAGATGATGAAGGAAAGGATTCCAGCTC 893
Query 957 CAGCAAGCATGGAACTGAGAGGATAATTCGAACAGTATATGCCCAAAATAAGGCAACACC 1016
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TACCAAGCATGGAACTGAGAGGATAATTCGAACAGTATATGCCCAAAATAAGGCAACACC 953
Query 1017 AAAGAAAAGAGAATCTTTGGGGAACTCTGGTTATGGTTCCCAGCGGAAATCTCTTGATGA 1076
|||||| |||||||||||||||||||| | |||||||||||||||||||| | ||||||
Sbjct 954 AAAGAAGAGAGAATCTTTGGGGAACTCCGAATATGGTTCCCAGCGGAAATCCCATGATGA 1013
Query 1077 TAACCGTGGTGTCTCCACATCTACGAAAGGTTATGCAACAAAATTGCAAGAGTCTGAGGA 1136
| |||||| ||||||||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 1014 TCACCGTGCTGTCTCCACATTTACGAATGGTTATGCAACAAAATTGCAGGAGTCTGAGGA 1073
Query 1137 GCGCAAGCGAGAGTTGCTGGCTGAGATTATGTTGGAGGAGCAGCGTGGTAGAGAGCTCTC 1196
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1074 GCGCAAGCGAGATTTGCTGGCTGAGATTATGTTGGAGGAGGAGCGTGGTAGAGAGCTCTC 1133
Query 1197 TGTGAACTTGAAAGAAATACTCACTGAAAATAGCTCTGAAGCTGAGGAAAAGCCATTGCG 1256
| ||||||||||||| |||| ||||||||||| |||||||||||||| ||||| |||||
Sbjct 1134 TATGAACTTGAAAGAGTTACTTACTGAAAATAGTTCTGAAGCTGAGGAGAAGCCGTTGCG 1193
Query 1257 GACGCGAAAGAGGAGCAAGGACCGGAGCAGGAGGATGTCCATGTGTTTGACAGATGAAGC 1316
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1194 GACGCGAAAGAGGAGCAAGGACCGGAGCAGCAGAATGTCCATGTGTTTGACAGATGAAGC 1253
Query 1317 AGAGCAATTCATCGACGAATTCATTTCAAACATAGAAGACACAGACTTTTCATCACTGGA 1376
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AGAGCAATTCATTGACGAATTCATTTCAAACATAGAAGACACAGACTTTTCATCACTGGA 1313
Query 1377 GGATGAGAGGAGCGAAAGTAGTTCAAGTTTTGGAATGATAAAAACACAAAGCTCTCAAAG 1436
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1314 GGATGAGAGGAGCGAAAGTAGTTCAAGTTTTGGGATGATAAAAACACAAAGCTCTCAAGG 1373
Query 1437 CACCAGTGCTCTTAAGAGTACTTC-TGTTGAAATGGACGGTGTTATGCTCCCTTGGTTGC 1495
||||| |||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||
Sbjct 1374 CACCACTGCTCTGAAGAGTA-TTCCTGTTGAAATGGACGGTGTTATGCTTCCTTGGTTGC 1432
Query 1496 AATGGGAAACTCCAGACG----TG-T-CTGCTGCAGTGGCATGCCTTATCAAGTCGCCGC 1549
||||||| |||||||||| | | |||||||| |||||||||||| |||||||||
Sbjct 1433 AATGGGATACTCCAGACGACACTTCTGCTGCTGCATTGGCATGCCTTAACAAGTCGCCAA 1492
Query 1550 ACACCCCAAATTCAAAATCTCTTGTCTGGGAGTCGGATACAACTCAGGATGCATCGAGTG 1609
||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1493 ACACCCCAAATACAAAATCTCTTCTCTGGGAGTCGGACACAACTCAGGATGCATCGAGTG 1552
Query 1610 GGCGAGGGACGAGCATTGGTACCATAAGTAGCAGAGGAAGCTGGAGCCCATATGACTCGG 1669
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1553 GGCAAGGGATGAGCATTGGTACCATAAGTAGCAGAGGAAGCTGGAGCCCATATGAGTCAG 1612
Query 1670 TCACGAAGCCTGTGATGCCCACAAAAACACTAAAGATAGATGTAGCGGAGTATCTGAAGC 1729
|||| || ||||||| ||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1613 TCACAAAACCTGTGAAGCCCATAAAAACACTAAAGATAGATGTAGCCGAGTATCTGAAGC 1672
Query 1730 GACCTAACAGCTCAGATATTCTAAATGAGACGTGGAAGCTAAGGCATAGAATCAGTTCGG 1789
||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1673 GACCTAACAGCTCCGATATTCTAAATGAAACGTGGAAGCTAAGGCACAGAATCAGTTCGG 1732
Query 1790 GAAGTCTTGTGCTATGTAGCCGCTCATTGATCTAA 1824
|||||||||||||||||||||||||||||||||||
Sbjct 1733 GAAGTCTTGTGCTATGTAGCCGCTCATTGATCTAA 1767
> Ahg887587 jgi|Araly1|887587|Al_scaffold_0058_3
Length=477
Score = 701 bits (379), Expect = 0.0
Identities = 438/467 (94%), Gaps = 2/467 (0%)
Strand=Plus/Plus
Query 801 TGGAAAGAGTCAAAATAGTGGTTCTCAGAAATCTGCT-GCTTCAGATAATAGACAAGGTC 859
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 12 TGGAAAGAGTCAAAATAGTGGTTCTCAGAAATCTG-TGGCTTCAGATAATAGACAAGGTC 70
Query 860 TTAGGAGGTCTTTTAGCCAGAATCCAATCAAATACCATGATGGCTACTCTAGCCAGTCTT 919
|||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 71 TTAGGAGGTCTTTTAGTCAAAATCCAGTCAAATACCATGATGGCTACTCTAGCCAGTCTT 130
Query 920 CTGCAGTCACAGATGATGAAGGAAAGGATTCCAGCTCCAGCAAGCATGGAACTGAGAGGA 979
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 131 CTGCAGTCACAGATGATGAAGGAAAGGATTCCAGCTCTACCAAGCATGGAACTGAGAGGA 190
Query 980 TAATTCGAACAGTATATGCCCAAAATAAGGCAACACCAAAGAAAAGAGAATCTTTGGGGA 1039
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 191 TAATTCGAACAGTATATGCCCAAAATAAGGCAACACCAAAGAAGAGAGAATCTTTGGGGA 250
Query 1040 ACTCTGGTTATGGTTCCCAGCGGAAATCTCTTGATGATAACCGTGGTGTCTCCACATCTA 1099
|||| | |||||||||||||||||||| | ||||||| |||||| ||||||||||| ||
Sbjct 251 ACTCCGAATATGGTTCCCAGCGGAAATCCCATGATGATCACCGTGCTGTCTCCACATTTA 310
Query 1100 CGAAAGGTTATGCAACAAAATTGCAAGAGTCTGAGGAGCGCAAGCGAGAGTTGCTGGCTG 1159
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 311 CGAATGGTTATGCAACAAAATTGCAGGAGTCTGAGGAGCGCAAGCGAGATTTGCTGGCTG 370
Query 1160 AGATTATGTTGGAGGAGCAGCGTGGTAGAGAGCTCTCTGTGAACTTGAAAGAAATACTCA 1219
||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| |
Sbjct 371 AGATTATGTTGGAGGAGGAGCGTGGTAGAGAGCTCTCTATGAACTTGAAAGAGTTACTTA 430
Query 1220 CTGAAAATAGCTCTGAAGCTGAGGAAAAGCCATTGCGGACGCGAAAG 1266
||| |||| | |||||||||||||| ||||| |||||||||||||||
Sbjct 431 CTGCAAATCGTTCTGAAGCTGAGGAGAAGCCGTTGCGGACGCGAAAG 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76904204655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5