BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50370.1
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495100 jgi|Araly1|495100|fgenesh2_kg.8__916__AT5G50370.1 1600 0.0
> Ahg495100 jgi|Araly1|495100|fgenesh2_kg.8__916__AT5G50370.1
Length=1035
Score = 1600 bits (866), Expect = 0.0
Identities = 987/1043 (95%), Gaps = 17/1043 (2%)
Strand=Plus/Plus
Query 1 CGCACTTCAAAAAGAGAACACAACTCCACCGGACCAAATCTAATTCTCTTGT-A-AGA-G 57
||||||||||||| ||||| | | ||||||||||||||||||||||| ||| | ||| |
Sbjct 1 CGCACTTCAAAAACAGAAC-C--CACCACCGGACCAAATCTAATTCTC-TGTAAGAGACG 56
Query 58 A--CGACGACGACGAACATGGCAACGAGCAGTGCGGCTTCTGTTGATATGGAAGATATTC 115
| ||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||
Sbjct 57 AGTCGACGACGACGAACATGGCCACGAGCAGTACCGCTTCTGTTGATTTGGAAGATATTC 116
Query 116 AGACTGTTGATCTCATGTCTGAGCTTCTTCGCCGTATGAAATGTGCCTCTAAACCTGACA 175
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 117 AGACCGTTGATCTCATGTCTGAGCTTCTTCGCCGCATGAAATGTGCCTCTAAACCTGACA 176
Query 176 AACGTCTCGTTTTCATCGGTCCACCTGGTTCAGGGAAAGGTACACAGTCTCCGGTCATAA 235
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 177 AACGTCTCGTTTTCATCGGTCCACCTGGTTCAGGCAAAGGTACACAGTCTCCAGTCATAA 236
Query 236 AGGATGAGTTTTGTTTGTGTCATTTGTCTACTGGTGACATGCTTAGAGCTGCTGTTGCTG 295
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AGGATGAGTTTTGTTTGTGCCATTTGTCTACTGGTGACATGCTTAGAGCTGCTGTTGCTG 296
Query 296 CTAAGACTCCTCTTGGTGTGAAGGCAAAGGAAGCAATGGATAAGGGAGAGCTTGTTTCTG 355
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTAAGTCCCCTCTTGGTGTTAAGGCAAAGGAAGCAATGGATAAGGGAGAGCTTGTTTCTG 356
Query 356 ATGACTTGGTTGTTGGTATCATGGATGAAGCAATGAACAGACCCAAATGTCAGAAAGGTT 415
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 357 ATGACTTGGTTGTTGGTATCATGGATGAAGCCATGAACAGACCCAAATGTCAGAAAGGTT 416
Query 416 TCATTCTTGATGGGTTCCCGCGGACTGTGACTCAAGCAGAGAAGCTTGATGAGATGCTTA 475
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 417 TCATTCTTGATGGGTTCCCGCGGACTGTGACCCAAGCAGAGAAGCTTGATGAGATGCTTA 476
Query 476 ATAGAAGGGGAGCTCAGATAGATAAGGTGCTTAATTTTGCGATCGATGATTCGGTTCTCG 535
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 477 ATAGAAGGGGAGCTCAGATTGATAAGGTGCTTAATTTTGCGATCGATGACTCGGTTCTGG 536
Query 536 AAGAAAGAATTACTGGAAGGTGGATTCACCCTTCAAGTGGAAGAAGCTATCATACTAAAT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAGAAAGAATTACTGGAAGGTGGATTCACCCTTCAAGTGGAAGAAGCTATCATACTAAAT 596
Query 596 TCGCACCTCCTAAAGTTCCAGGAGTCGATGATCTGACTGGAGAGCCATTGATTCAACGTA 655
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCGCACCTCCTAAAGTTCCCGGAGTCGATGATCTGACTGGAGAGCCATTGATTCAACGTA 656
Query 656 AAGATGACAATGCGGATGTTCTTAGATCAAGGCTAGATGCATTCCACAAGCAGACGCAAC 715
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 657 AAGATGACAATGCGGATGTTCTTAGATCAAGGCTGGATGCATTCCACAAGCAGACGCAAC 716
Query 716 CGGTAATTGACTATTATGCGAAGAAGGAGAATCTGGTGAACATACCGGCAGAGAAGGCCC 775
||||||||||||| || |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 717 CGGTAATTGACTACTACGCGAAGAAGGGGAATCTGGTGAACATACCAGCAGAGAAGGCCC 776
Query 776 CGGAAGAGGTTACAAAAGTGGTGAAGAAGGTTGTGTCTACATGAAACTGAAAAACGAAAT 835
||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 777 CGGAAGAGGTTACGAAAGTGGTGAAGAAGGTTTTGTCTACATGAAACTGAAAAATGAAAT 836
Query 836 GGCATCAGTTTAAGATGTATCtttttttGCTTATCTTAAATAACTCTCCTGAGttttttt 895
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 837 GGCATCAGTTTAAGATGTATCTTTTTTTTCTTATTTTAAA-AACTCTCCTGAGTTTTTTT 895
Query 896 ATTTGTTTCCCCCGGAATGTC-T-TTTGT-CTTGAGAGCAACATTTGCTGCAGTTTTGTG 952
| | | ||||||||||||| | ||| | ||||||||||||||||||||||||||||||
Sbjct 896 -T--GCTCCCCCCGGAATGTCGTCTTTTTTCTTGAGAGCAACATTTGCTGCAGTTTTGTG 952
Query 953 CAGTGTGTTTCACTAAGGCTTATTGTTTGCGACTGGAAATGTCAGGTGAATAAAGG-AAA 1011
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 953 CAGTGTGTTTCACTAAGGTTTATTGTTTGCGACTGGTTATGTCAGGTGAATAAAGACAAA 1012
Query 1012 AACAAAATCGTAGTAAAATAGTG 1034
|||||||| |||||||||| |||
Sbjct 1013 AACAAAATGGTAGTAAAATGGTG 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38771006589
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5