BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50375.2
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495101 jgi|Araly1|495101|fgenesh2_kg.8__917__AT5G50375.1 1214 0.0
> Ahg495101 jgi|Araly1|495101|fgenesh2_kg.8__917__AT5G50375.1
Length=1187
Score = 1214 bits (657), Expect = 0.0
Identities = 724/756 (96%), Gaps = 5/756 (1%)
Strand=Plus/Plus
Query 177 CGGCGGAGCGATTATGTCAGGATCTTCTTCACCGAGCTTGTGGCTGGCACCGAATCCGAG 236
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 102 CGGCGGAGCGATTATGTCAGGATCATCTTCTCCGAGCTTGTGGCTGGCACCGAATCCTAG 161
Query 237 CAAGAGATGGGGAGAGCTCTTCTTCCTCTTCTACACTCCTTTTTGGCTCACTCTCTGTTT 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 CAAAAGATGGGGAGAGCTCTTCTTCCTCTTCTACACTCCTTTTTGGCTCACTCTCTGTTT 221
Query 297 AGGCATCGTTGTTCCTTACAAGCTTTACGAGACATTCACGGAGTTGGAGTATCTGCTTCT 356
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 222 AGGCATCGTTGTCCCTTACAAGCTCTACGAGACATTCACGGAGTTGGAGTATCTGCTTCT 281
Query 357 AGCTTTGGTTTCAGCTGTTCCTGCTTTCGTTATACCCATGTTACTCGTTGGAAAGGC--- 413
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 282 AGCTTTGGTTTCAGCTGTTCCTGCTTTCGTTATACCGATGTTACTCGTTGGAAAGGTTAT 341
Query 414 CGACAGAAGTTTATGTTGGAAGGACCGCTATTGGGTTAAGGCAAATCTCTGGATAATTGT 473
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 342 CGACACAAGTTTATGTTGGAAGGACCGCTATTGGGTTAAGGCAAATCTCTGGATAATTAT 401
Query 474 TTTCAGCTATGTCGGAAACTACTTTTGGACTCACTATTTCTTTAAAGTTCTTGGAGCGTC 533
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 402 GTTCAGCTATGTGGGAAACTATTTTTGGACTCACTATTTCTTTAAAGTTCTTGGAGCATC 461
Query 534 CTATACTTTTCCATCATGGAAAATGAATAATGTGCCTCACACAACATTCTTCCTAACACA 593
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 462 CTATACTTTTCCATCGTGGAAAATGAATAACGTGCCTCACACAACATTCTTCCTAACACA 521
Query 594 TGTTTGCTTCCTCTTTTACCACGTTGCATCGAACATTACTCTTCGGAGGCTACGCCATTC 653
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 522 TGTTTGCTTCCTCTTTTACCACGTTGCATCGAACATTACACTTCGAAGGCTACGACATTC 581
Query 654 CACTGCTGATTTACCAGATTCTCTGAAATGGTGTTTTGAGGCTGCATGGATACTTGCGCT 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 582 CACTGCTGATTTACCAGATTCTCTGAAATGGTGTTTTGAGGCTGCATGGATACTGGCGCT 641
Query 714 TTCTTATTTCATTGCATACTTGGAGACTATTGCTATCGCAAATTTTCCTTACTATGAGTT 773
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 642 TTCTTATTTCATTGCATACTTGGAGACTATTGCTATTGCAAATTTTCCTTACTACGAGTT 701
Query 774 TGTGGACCGAAGTGCCATGTACAGAGTTGGATGTCTT-TTCTATGCCATTTACTTCATTG 832
||| |||||||||||||||||||||||||| ||| || |||||||||||||||||||| |
Sbjct 702 TGTAGACCGAAGTGCCATGTACAGAGTTGGGTGT-TTGTTCTATGCCATTTACTTCATAG 760
Query 833 TGAGCTTCCCAATGTTCTTCAGGATGGATGAGAAATCAACTGATGAATGGGATTTATCTC 892
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 761 TGAGCTTTCCAATGTTCTTCAGGATGGATGAGAAATCAAGTGATGAATGGGATTTATCTC 820
Query 893 GAGTGGCTGTTGATGCTTTGGGTGCTGCTATGTTGG 928
||||||||||||||||||||||||||||||||||||
Sbjct 821 GAGTGGCTGTTGATGCTTTGGGTGCTGCTATGTTGG 856
Score = 130 bits (70), Expect = 3e-29
Identities = 89/97 (92%), Gaps = 6/97 (6%)
Strand=Plus/Plus
Query 31 ATGAGCGAGCGGATCTAGCTT-TCGTCAAAATCATCATCACTGAGTACATCTGCCACGTC 89
|||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||
Sbjct 1 ATGAGCGAGCGGATCTAG-TTATCGTCAAAATCATCA-GA--GAGTACATCTGCCACGTC 56
Query 90 AGCTTGATTGGGAT-CTATTTGGTCGCCCGTACACAA 125
|||||||||||||| |||||||||||||||||| |||
Sbjct 57 AGCTTGATTGGGATACTATTTGGTCGCCCGTACTCAA 93
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45251902479
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5