BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50390.1 Length=2106 Score E Sequences producing significant alignments: (Bits) Value Ahg495104 jgi|Araly1|495104|fgenesh2_kg.8__920__AT5G50390.1 3164 0.0 > Ahg495104 jgi|Araly1|495104|fgenesh2_kg.8__920__AT5G50390.1 Length=2106 Score = 3164 bits (1713), Expect = 0.0 Identities = 1977/2108 (94%), Gaps = 4/2108 (0%) Strand=Plus/Plus Query 1 ATGGAGATTCCACTCTCGCGTTACCAGAGCATAAGATTAGACGAGATTCGAGACTCTTCT 60 ||||||||||||||| | |||||||| |||||||| |||||||||||||||||||||||| Sbjct 1 ATGGAGATTCCACTCGCACGTTACCAAAGCATAAGGTTAGACGAGATTCGAGACTCTTCT 60 Query 61 TCCAATCCCAAGGTTCTCACTTTCCCGCGAAAATTCTCGTTACGAGGAAGAAGATGGAAG 120 ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCCAATCAAAAGGTTTTCAATTTCCCGCGAAAATTCTCGTTACGAGGAAGAAGATGGAAG 120 Query 121 AACCCATTTGGAAGACTCA-GTTGTTCTTCTGTAGTTCAAGGTCTGAAACCAAAACCAAA 179 || |||||||| ||| ||| | |||||||||||||||||||| ||||||||||||||||| Sbjct 121 AATCCATTTGGGAGAATCACG-TGTTCTTCTGTAGTTCAAGGGCTGAAACCAAAACCAAA 179 Query 180 GCTGAAACCAGAACCAATTAGAATCGAGGTTAAGGAATCGAAAGATCAGATTTTGGATGA 239 ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||| Sbjct 180 GCTGAAACCAGAACCAATTAGAATCGATGTTGAGGAATCGAAAGATCAGGTTTTTGATGA 239 Query 240 TACCCAGATCAGTAAATCTGGTGTAACGATTTGTAGTCAGATAGAGAAGTTGGTTTTGTG 299 |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct 240 TACCCAGATCAGGAAATCTGGTGTGAGGATTTGTAGTCAGATAGAGAAGTTGGTTTTGTG 299 Query 300 TAATAGATTCAGAGAAGCTTTTGAATTGTTTGAGATTCTGGAGATTCGCTGTAGTTTTAA 359 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 300 TAATAGGTTCAGAGAAGCTTTTGAATTGTTTGAGATTCTGGAGATTCGATGTAGTTTTAA 359 Query 360 GGTTGGTGTTAGTACTTATGATGCTTTAGTGGAAGCTTGTATTCGTTTGAAATCGATTCG 419 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 360 GGTTGGTGTTAGTACTTATGATGCTTTAGTTGAAGCTTGTATTCGTTTGAAATCGATTCG 419 Query 420 GTGTGTTAAAAGGGTTTATGGGTTTATGATGAGTAATGGGTTTGAGCCGGAGCAGTATAT 479 |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 420 GTGTGTTAAAAGGGTTTATGGGTTTATGATCAGTAATGGGTTTGAGCCGGAGAAGTATAT 479 Query 480 GATGAACAGAATCTTGTTGATGCATGTCAAGTGTGGGATGATTATTGATGCACGTAGGTT 539 |||||| |||||||||||||||||||| || |||||||||||||||||||||||||| || Sbjct 480 GATGAATAGAATCTTGTTGATGCATGTGAAATGTGGGATGATTATTGATGCACGTAGCTT 539 Query 540 GTTTGATGAAATCCCTGAGAGAAATTTGTATTCTTATTACTCGATTATCTCTGGGTTTGT 599 |||||||||||| ||||||||||| |||| ||||||| |||| ||||| || |||||||| Sbjct 540 GTTTGATGAAATGCCTGAGAGAAACTTGTTTTCTTATAACTCTATTATTTCCGGGTTTGT 599 Query 600 TAATTTTGGGAATTATGTTGAAGCTTTTGAGTTGTTTAAGATGATGTGGGAGGAGCTTTC 659 |||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 600 TAATTTTGGGAACTATGAAGAAGCTTTTGAGCTGTTTAAGATGATGTGGGAGGAGCTTTC 659 Query 660 TGATTGTGAGACTCATACGTTTGCGGTGATGCTACGGGCCTCGGCTGGCTTAGGGTCTAT 719 ||||||||||||||||| |||||||||||||| || || |||||||| ||||||||| | Sbjct 660 GGATTGTGAGACTCATACATTTGCGGTGATGCTTCGTGCGTCGGCTGGGTTAGGGTCTGT 719 Query 720 TTATGTGGGGAAACAGTTACACGTTTGTGCGTTGAAGTTAGGAGTTGTTGATAATACCTT 779 |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct 720 TTATGTGGGGAAACAGTTACACGTTTGTGCATTGAAATTAGGAGTTGTTGATAATACGTT 779 Query 780 TGTCTCGTGTGGATTGATTGATATGTATAGCAAGTGTGGGGATATTGAAGATGCTCGATG 839 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 780 CGTCTCATGTGGATTGATTGATATGTATAGCAAGTGTGGGGACATTGAAGATGCTCGATG 839 Query 840 TGCTTTTGAGTGTATGCCCGAGAAAACTACTGTTGCTTGGAACAACGTTATTGCGGGTTA 899 |||||||||| ||||||| |||||||||||||||||||||||||| | | || ||||| Sbjct 840 TGCTTTTGAGAGTATGCCTGAGAAAACTACTGTTGCTTGGAACAATATCGTAGCAGGTTA 899 Query 900 TGCGCTTCATGGTTATAGTGAGGAAGCTCTGTGTTTGTTGTATGACATGCGAGACTCAGG 959 |||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| Sbjct 900 TGCGCTTCATGGTTATAGTGAGGAAGCTCTGTGTTTTTTGTATGAGATGCGCGACTCAGG 959 Query 960 TGTGTCTATTGATCAGTTCACACTTTCGATAATGATAAGAATTTCTACAAAGCTTGCAAA 1019 ||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 960 TGTGTCTATGGACCAGTTCACACTTTCGATAATGATAAGAATTTCTACAAGGCTTGCAAA 1019 Query 1020 GCTTGAGCTTACTAAGCAGGCACACGCTAGTTTAATTCGAAACGGTTTTGAATCGGAAAT 1079 |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1020 ACTTGAGCTTACTAAGCAGGCACACGCTAGTTTAATTCGAAGCGGTTTTGAATCAGAAAT 1079 Query 1080 CGTTGCAAACACAGCTCTTGTAGACTTTTATAGCAAATGGGGTAGAGTAGATACTGCTAG 1139 ||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1080 CGTCGCAAACACGGCTCTTGTGGATTTTTATAGCAAATGGGGTAGAGTAGATACTGCTAG 1139 Query 1140 ATATGTTTTTGATAAATTGCCGAGAAAAAATATAATCTCATGGAACGCTTTGATGGGTGG 1199 ||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1140 ATATGTTTTCGATAAATTACCGAGGAAAAATATAATTTCATGGAACGCTTTGATGGGTGG 1199 Query 1200 ATATGCAAATCATGGTAGAGGAACTGATGCTGTTAAGTTGTTTGAGAAAATGATTGCAGC 1259 |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| || Sbjct 1200 ATATGCAAATCATGGTAGAGGAACCGATGCTGTTAGGTTGTTTGAGAGAATGATTGCTGC 1259 Query 1260 AAACGTCGCTCCAAACCATGTCACATTTCTTGCAGTTCTATCAGCTTGTGCCTATTCAGG 1319 ||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 1260 AAAAGTAGCTCCAAACCACGTCACATTTCTTGCAGTTTTATCAGCTTGTGCCTATTCAGG 1319 Query 1320 TTTATCTGAGCAAGGTTGGGAGATTTTTCTATCGATGAGTGAGGTTCATGGGATCAAACC 1379 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1320 TTTATCTGAGCAAGGTTGGGAGATTTTTCTATCGATGAATGAGGTTCATGGGATCAAACC 1379 Query 1380 AAGGGCGATGCATTATGCCTGCATGATTGAGCTGTTGGGTAGAGACGGTTTATTAGATGA 1439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 AAGGGCGATGCATTATGCCTGCATGATTGAGCTGTTGGGTAGAGACGGTTTATTAGATGA 1439 Query 1440 AGCCATTGCGTTT-ATCCGAAGAGCTCCTTTGAAAACCACGGTGAACATGTGGGCAGCAC 1498 ||||||||| ||| ||| ||||||||||||||||||| |||||||| ||||||||||||| Sbjct 1440 AGCCATTGC-TTTCATCAGAAGAGCTCCTTTGAAAACAACGGTGAATATGTGGGCAGCAC 1498 Query 1499 TCTTGAATGCCTGTAGGATGCAGGAAAACTTAGAGCTTGGAAGAGTGGTTGCTGAAAAAC 1558 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1499 TCTTGAATGCCTGTAGGATGCAGGGAAACTTAGAGCTTGGAAGAGTGGTTGCTGAAAAAC 1558 Query 1559 TCTATGGAATGGGACCCGAGAAGCTCGGAAACTACGTTGTGATGTATAATATGTACAACA 1618 ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | Sbjct 1559 TCTATGGAATGGGACCCGAGAAGCTGGGAAACTACGTTGTGCTGTATAATATGTACAATA 1618 Query 1619 GTATGGGAAAAACTGCAGAAGCTGCAGGGGTTTTGGAGACATTGGAGAGCAAAGGATTAA 1678 |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| Sbjct 1619 GTATGGGAAAAACTGCAGAAGCTGCAGGAGTTTTAGAGACATTGGAGAGCAAAGGTTTAA 1678 Query 1679 GCATGATGCCGGCTTGTACTTGGGTTGAGGTTGGAGATCAGACTCACAGCTTTCTTTCAG 1738 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1679 GCATGATGCCGGCTTGTACTTGGGTCGAGGTTGGAGATCAGACTCACAGTTTTCTTTCAG 1738 Query 1739 GAGATAGGTTTGATTCTTACAATGAGACGGTGAAAAGGCAGATATACCAAAAAGTGGATG 1798 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 1739 GAGATAGGTTTGATTCTTACAATGAGACGGTGAAAAGGGAAATATACCAAAAAGTGGATG 1798 Query 1799 AACTAATGGAAGAGATTTCCGAGTATGGGTACTCAGAGGAGGAGCAACACCTTCTTCCAG 1858 ||||||||||||| |||| |||||||||||| | | ||||||| || ||||||| |||| Sbjct 1799 AACTAATGGAAGAAATTTACGAGTATGGGTATTTGGCGGAGGAGAAAAACCTTCTACCAG 1858 Query 1859 ACGTAGATGAAAAGGAAGAAGAGCGAGTAGGGCGATATCACAGCGAGAAACTAGCCATAG 1918 |||| ||||||||||||||||| |||||||||||||||||||||||||| || || |||| Sbjct 1859 ACGTGGATGAAAAGGAAGAAGAACGAGTAGGGCGATATCACAGCGAGAAGCTTGCGATAG 1918 Query 1919 CTTACGGATTGGTGAATACGCCGGAATGGAATCCATTGCAGATTACTCAGAACCATAGGA 1978 |||| |||||| ||||||| || |||||||||||||||||||| |||||||||||||||| Sbjct 1919 CTTATGGATTGATGAATACACCAGAATGGAATCCATTGCAGATAACTCAGAACCATAGGA 1978 Query 1979 TATGCAAAAATTGCCACAAGGTGGTTGAGTTCATATCTTTGGTTACAGGACGAGAGATGG 2038 |||||||| |||| |||||||| |||||||||||||| |||| |||||| ||||||||| Sbjct 1979 TATGCAAAGATTGTCACAAGGTAATTGAGTTCATATCTCTGGTGACAGGAAGAGAGATGG 2038 Query 2039 TAGTGAGAGACGCGAGCCGGTTCCATCATTTTAAAGAAGGGAAGTGTTCTTGTGGAGGTT 2098 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2039 TAGTAAGAGACGCGAGCCGGTTCCATCATTTTAAAGAAGGGAAGTGTTCTTGTGGAGGTT 2098 Query 2099 ATTGGTGA 2106 |||||||| Sbjct 2099 ATTGGTGA 2106 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79227709600 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5