BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50400.1
Length=2074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331445 jgi|Araly1|331445|fgenesh1_pm.C_scaffold_8000788 2765 0.0
Ahg492349 jgi|Araly1|492349|fgenesh2_kg.7__1782__AT4G24890.1 1482 0.0
> Ahg331445 jgi|Araly1|331445|fgenesh1_pm.C_scaffold_8000788
Length=1848
Score = 2765 bits (1497), Expect = 0.0
Identities = 1737/1852 (94%), Gaps = 20/1852 (1%)
Strand=Plus/Plus
Query 239 ATGGCTAGGAATTTCTTGTTAGTGCTTCTATGGTTCATCGTACAGGT-G--T----C--- 288
|||||||||||||| ||||| |||||||| ||||||||||||||||| | | |
Sbjct 1 ATGGCTAGGAATTTTTTGTTTGTGCTTCTGTGGTTCATCGTACAGGTGGCTTCAAGCTTG 60
Query 289 --TTCAAGTCACGAAAATGGACGTGGAGATCAAGCACTGTCTCAAATTGATATATACGCC 346
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 61 TGTTCAAGTCAAGAAAATGGACGTGGTGATCAAGCACTGTCTCAAATTGATATTTACACC 120
Query 347 ATAAATTTAGCTCAGCATCACTCTGCTTTTATTCACGTTTCCCCTCTTGTTCTTGGTTCC 406
|||||||| |||| | |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 121 ATAAATTTTGCTCTGTATCACTCTGCTTCCATTCACGCTTCCCCTCTTGTTCTTGGTTCC 180
Query 407 CAGGGTCAGGACACAGAATGGGTAAATGTTGTTATCTCAAATCCGGAGCCTTCTTCAGAC 466
|||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 181 CAGGGTGAGGACACAGAATGGGTAAATGTTGATATTTCAAATCCGGAGCCTTCTTCAGAC 240
Query 467 GATTGGGTTGGAGTCTTCTCACCAGCAAAATTCGACTCATCTTCTTGTGCTCCAACAGAT 526
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 241 GATTGGGTTGGAGTCTTCTCACCGGCAAACTTCGACTCATCTTCTTGTGCTCCAACAGAT 300
Query 527 GACAAAGAGATAGCTCCTTTTATTTGCTCAGCTCC-AGTCAAGTATATGTATGCCAAGTC 585
| |||||||||||| |||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 301 GGCAAAGAGATAGCACCTTTTATTTGCTCAGCTCCTA-TCAAGTACATGTATGCCAAGTC 359
Query 586 CAGTCCTGACTATATGAAGACTGGGAATGCGGTTTTGAAGTTCATGCTTATAAACCAGAG 645
|| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAACCCTGACTTTATGAAGACCGGGAATGCGGTTTTGAAGTTCATGCTTATAAACCAGAG 419
Query 646 AGCTGATTTCTCCTTTGCCCTCTTCACTGGGGGACTCTCAAATCCAACACTTGTCTCGGT 705
||||||||||||||||||||||||||| |||||||||||||||||||| |||||| || |
Sbjct 420 AGCTGATTTCTCCTTTGCCCTCTTCACAGGGGGACTCTCAAATCCAACTCTTGTCGCGAT 479
Query 706 TTCAAATCATGTATCGTTTATCAATCCTAAAGCTCCTGTCTATCCACGTCTTGCTTTAGG 765
||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 480 TTCAAATCATGTATCATTTGTCAATCCTAAAGCTCCTGTTTATCCGCGTCTTGCTTTAGG 539
Query 766 GAAGAAATGGGACGAGATGACCGTAACATGGACAAGTGGTTACAACATAGGTGAGGCTGT 825
|||||| |||||||| |||| ||||||||||||||| ||||| | |||||| || |||||
Sbjct 540 GAAGAATTGGGACGAAATGAGCGTAACATGGACAAGCGGTTATAGCATAGGCGAAGCTGT 599
Query 826 TCCGTTTGTGGAATGGAGTCGTAAGGGAACTCGAAGTAGACGATCGCCAGCTGGTACCTT 885
||||||||||||||||||||| |||||||||| ||||||| |||| ||||||||||||||
Sbjct 600 TCCGTTTGTGGAATGGAGTCGGAAGGGAACTCAAAGTAGAAGATCACCAGCTGGTACCTT 659
Query 886 GACTTTTACCAGGAACAGCATGTGTGGTGCTCCTGCTCGTACTGTTGGTTGGCGTGATCC 945
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 GACTTTTACCAGAAACAGCATGTGTGGTGCTCCTGCTCGTACTGTTGGTTGGCGCGATCC 719
Query 946 AGGTTTCATCCACACTGC-TTCATTGAAAGATCTTTGGCCAAACCTCAAGTACACATACA 1004
||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 720 GGGTTTCATCCACACTGCTTTC-TTGAAAGATCTTTGGCCAAACCTCGAGTACACATACA 778
Query 1005 GGATGGGTCATGAGTTGATGAATGGATCAATAGTTTGGAGCAAGAATTTCACTTTCAAGT 1064
|||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 779 GGATGGGTCATGAGTTGATGAATGGATCGATAATTTGGAGCAAGAATTTCACCTTCAAGT 838
Query 1065 CCTCTCCTTATCCTGGACAAGACTCGTTACAACGGGTCATAATCTTCGGGGACATGGGGA 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCTCTCCTTATCCTGGACAAGACTCGTTACAACGGGTCATAATCTTCGGGGACATGGGGA 898
Query 1125 AGGGAGAGCGGGATGGTTCAAACGAGTACAATGATTATCAGCCTGGTTCTCTCAACACCA 1184
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 AGGGAGAGCGGGATGGGTCAAACGAGTACAATGATTATCAGCCTGGTTCCCTCAACACCA 958
Query 1185 CTGATCAACTCATCAAGGACTTGAAGAACATTGACATTGTTTTCCACATTGGAGATATCA 1244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CTGACCAACTCATCAAGGACTTGAAGAACATTGACATTGTTTTCCACATTGGAGATATCA 1018
Query 1245 CTTACGCAAATGGTTACATCTCGCAGTGGGATCAGTTCACAGCTCAAGTTGAACCTATTG 1304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTTACGCAAATGGTTACATCTCACAGTGGGATCAGTTCACAGCTCAAGTTGAACCTATTG 1078
Query 1305 CTTCTACTGTTCCATACATGGTCGCAAGTGGCAACCACGAGCGGGATTGGCCAGACTCTG 1364
|||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||
Sbjct 1079 CTTCTACTGTTCCATACATGATCGCAAGTGGAAACCATGAGCGGGATTGGCCAGACTCTG 1138
Query 1365 GATCCTTCTATGGTGGTAAAGACTCTGGAGGGGAGTGTGGGGTTCCTGCGGAAACCATGT 1424
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1139 GATCTTTCTATGGCGGTAAAGACTCTGGAGGGGAGTGTGGGGTTCCTGCAGAAACAATGT 1198
Query 1425 TTGATTTTCCTGCTGAGAACAAAGCTAAGTTCTGGTACTCTGCGGATTATGGAATGTTTC 1484
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTGATTTTCCTGCTGAGAATAAAGCTAAGTTCTGGTACTCTGCGGATTATGGAATGTTTC 1258
Query 1485 GGTTCTGTGTAGCGGACACTGAACATGATTGGAGAGAAGGGTCAGAGCAATACCAATTCA 1544
||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||
Sbjct 1259 GGTTCTGTGTAGCGGACACAGAACATGATTGGAGAGAAGGGTCGGAGCAATACCGATTCA 1318
Query 1545 TAGAGCGTTGTCTTGCCTCTGTAGACAGAAGGGCTCAGCCTTGGTTGATTTTTATTGCTC 1604
|||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct 1319 TAGAGCGTTGTCTTGCCTCTGTAGACAGAAAGACTCAGCCTTGGTTGATTTTTACTGCTC 1378
Query 1605 ATCGTGTTCTCGGTTATTCAACAAACGATTGGTATGGTCAAGAAGGTTCCTTTGAAGAAC 1664
||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
Sbjct 1379 ATCGTGTCCTCGGTTATTCCACAAATGATTGGTATGGCCAAGAAGGTTCCTTTGAAGAGC 1438
Query 1665 CTATGGGAAGAGAGAGCTTGCAAAAGCTCTGGCAGAAGTATAAAGTAGACATCGCGTTCT 1724
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1439 CTATGGGAAGAGAGAGCTTGCAAAAGCTGTGGCAGAAGTATAAAGTAGACATTGCGTTCT 1498
Query 1725 ACGGTCATGTTCATAACTATGAAAGAACATGCCCCATTTACCAGAACCAATGTATGGACA 1784
|||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1499 ACGGCCATGTCCATAACTACGAAAGAACCTGCCCCATTTACCAGAACCAATGTATGGACA 1558
Query 1785 ATGAGAAA-AGTCACTACTCAGGAGCCTTCAAAGGAACTATACACGTGGTTGTTGGTGGT 1843
||| ||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1559 ATGC-AAAGAGTGGCTACTCAGGAGCCTTCAAAGGAACTATACACGTAGTTGTTGGTGGT 1617
Query 1844 GCAGGAAGTCACTTGTCTTCGTTCAGCTCGCTGAAACCCAAGTGGAGTATCTTCAGAGAC 1903
|||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1618 GCAGGAAGTCACTTGTCTCCGTTCAGCTTGCTGAAACCCAACTGGAGTATCTTCAGAGAC 1677
Query 1904 TATGATTACGGGTTTGTGAAGTTGACGGCTTTTGATCACTCCTCTCTTCTCTTCGAATAC 1963
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1678 TATGATTACGGGTTTGTGAAGTTGACGGCTTTCGATCACTCCTCCCTTCTCTTCGAATAC 1737
Query 1964 AAGAAA-AGCAGCAATGGAGCTGTACATGACTCCTTCACTATCTTTAGAGAATACAGAGA 2022
|| ||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1738 AA-AAAGAGCAGCAACGGAGCTGTGCATGACTCCTTCACTATCTTTAGAGAATACAGAGA 1796
Query 2023 TGTCTTGGCTTGTGTTCGAGATAGCTGCGAGCCAACCACATTAGCTTCATGA 2074
|||| ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1797 TGTCCTGGCTTGTGTTCGAGATAGCTGCGAACCAACCACTTTAGCTTCATGA 1848
> Ahg492349 jgi|Araly1|492349|fgenesh2_kg.7__1782__AT4G24890.1
Length=1884
Score = 1482 bits (802), Expect = 0.0
Identities = 1487/1811 (82%), Gaps = 73/1811 (4%)
Strand=Plus/Plus
Query 302 AATGGACGTGGAGATCAAGCACTGTCTCAAATTGATATATACGCCATAAAT-TTAGCTCA 360
||||| |||||||||||||||||| |||| ||| |||| |||| | || | || |||
Sbjct 79 AATGGTCGTGGAGATCAAGCACTGGCTCAGATTAATATTTACGAAACAAGTCTT-GCTTT 137
Query 361 GCATCAC-TCTGCTTTTA-TTCACGTTTCCCCTCTTGTTCTTGGTTCCCAGGGTCAGGAC 418
| || || |||| | | |||||| |||||||| ||||||||||| |||||| | ||
Sbjct 138 GGAT-ACTTCTG-TCAAACTTCACGCTTCCCCTCAAGTTCTTGGTTCTCAGGGTGAAGAT 195
Query 419 ACAGAATGGGTAAATGTTGTTATCTCAAATCCGGAGCCTTCTTCAGACGATTGGGTTGGA 478
|| ||||||||| || ||| |||||| || || |||| ||||||||||||||| | |||
Sbjct 196 ACTGAATGGGTAGATCTTGCTATCTCCAACCCCAAGCCCTCTTCAGACGATTGGATAGGA 255
Query 479 GTCTTCTCACCAGCAAAATTCGACTC----ATCTTCTTGTG-CTCCAACAGATGACAAAG 533
|| ||||| ||||||||||||||||| | | | ||| | | |||| | || |||||
Sbjct 256 GTTTTCTCTCCAGCAAAATTCGACTCGGGTAAC-TGTTG-GCCAACAACTGGTGGCAAAG 313
Query 534 AGATAGCTCCTTTTATTTGCTCAGCT-CCAGTCAAGTATATGTA-TGCCAAGTC-CAGTC 590
||| | |||||| || || ||| || ||| ||||||| ||||| || || || || |
Sbjct 314 AGAAAACTCCTTACATATGTTCATCTCCCA-TCAAGTACATGTATTG-TAACTCTCA-CC 370
Query 591 CTGACTATATGAAGACTGGGAATGCGGTTTTGAAGTT-CATGCTTATAAACCAGAGAGCT 649
| |||||||||||| | ||||||| | || | ||||| || | ||||||| |||||||||
Sbjct 371 CAGACTATATGAAGTCCGGGAATGTGATTCTCAAGTTCCA-GATTATAAATCAGAGAGCT 429
Query 650 GATTTCTCCTTTGC-C-CTCTT-CACTGGGGGACTCTCAA-ATCCAACACTTGTCTC-G- 703
||| |||| ||||| | | || || | |||| || ||| | || |||| | |||| |
Sbjct 430 GATATCTCTTTTGCACTGTTTTCCAGT-GGGG--TC-CAAGAGCC-ACACCT-TCTCGGT 483
Query 704 GTTTCAAATCATGTATCGTTT-ATCAATCCTAAAGCTCCTGTCTATCCACGTCTTGCTTT 762
||||| |||| |||| | ||| ||||||||||||| || | || ||||||||||| ||
Sbjct 484 GTTTCGAATCCTGTAGC-TTTCGTCAATCCTAAAGCACCCCTATACCCACGTCTTGCATT 542
Query 763 AGGGAAGAAATGGGACGAGATGACCGTAACATGGACAAGTGGTTACAACATAGGTGAGGC 822
||||||||| |||||||| |||||||| |||||||| |||||||||||||||| ||||||
Sbjct 543 AGGGAAGAATTGGGACGAAATGACCGTGACATGGACTAGTGGTTACAACATAGATGAGGC 602
Query 823 TGTTCCGTTTGTGGAATGGAGTCG-TAAGGGAAC-TCGAAG-TAGACGATCGCCAGCTGG 879
|||||| || | ||||||||| | ||||| || || || |||| |||| ||||||||
Sbjct 603 TGTTCCATTCATTGAATGGAGT-GCAAAGGG-ACTTC-CAGCTAGAAGATCACCAGCTGG 659
Query 880 TACCTTGACTTTTACCAGGAACAGCATGTGTGGTGCTCCTGCTCG-TACTGTTGGTTGGC 938
|| ||||| |||| ||| ||||||||||||||| ||||||||| | ||||||||||
Sbjct 660 AACATTGACCTTTAACAGAAACAGCATGTGTGGTAATCCTGCTCGCGGC-GTTGGTTGGC 718
Query 939 GTGATCCAGGTTTCATCCACACTGC-TTCATTGAAAGATCTTTGGCCAAACCTC-AAGTA 996
||||||| |||||| |||| ||| | ||| |||||||| ||||||||||||| | || ||
Sbjct 719 GTGATCCTGGTTTCTTCCATACTTCTTTC-TTGAAAGAACTTTGGCCAAACCGCGAA-TA 776
Query 997 CACATACAGGATGGGTCATGAGTTGATGAATGGATCAATAGTTTGGAGCAAGAATTTCA- 1055
|||||||||| | || ||||| ||| | ||||| || | | ||||||||||||||| ||
Sbjct 777 CACATACAGGCTAGGCCATGACTTGGTCAATGGTTCGACAATTTGGAGCAAGAATTACAC 836
Query 1056 CTTTCAAGTCCTCTCCTTATCCTGGACAAGACTCGTTACAACGGGTCATAATCTTCGGGG 1115
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |
Sbjct 837 CTTT-GTGTCCTCTCCTTATCCTGGACAAGACTCGAAACAACGGGTCATAATATTCGGTG 895
Query 1116 ACATGGGGAAGGGAGAGCGGGATGGTTCAAACGAGTACAATGATTATCAGCCTGGTTCTC 1175
||||||| ||||| || || ||||| || || |||||||||||||| ||||||||||| |
Sbjct 896 ACATGGGAAAGGGTGAACGAGATGGCTCGAATGAGTACAATGATTACCAGCCTGGTTCCC 955
Query 1176 TCAACACCACTGATCAACTCATCAAGGACTTGAAGAACATTGACATTGTTTTCCACATTG 1235
||||||| || || ||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 956 TCAACACAACAGACCAAGTCATCAAGGACTTGAAGGACATTGACATTGTTTTCCACATTG 1015
Query 1236 GAGATATCACTTACGCAAATGGTTA-CATCTCGCAGTGGGATCAGTTCACAGCTCAAGTT 1294
||||| ||||||| | ||||| || | |||| ||||||||||||||||||||||||||
Sbjct 1016 GAGATCTCACTTATTCCAATGGGTATC-TCTCCCAGTGGGATCAGTTCACAGCTCAAGTC 1074
Query 1295 GAACCTATTGCTTCTACTGTTCCATACATGGTCGCAAGTGGCAACCACGAGCGGGATTGG 1354
|| || |||||||||||||| || |||||| | || ||||||||||||||||| ||||||
Sbjct 1075 GAGCCCATTGCTTCTACTGTCCCCTACATGATAGCCAGTGGCAACCACGAGCGTGATTGG 1134
Query 1355 CCAGACTCTGGATCCTTCTATGGTGGTAAAGACTCTGGAGGGGAGTGTGGGGTTCCTGCG 1414
|||||| ||||||| ||||||| |||| |||||||||||| |||||||| ||||||||
Sbjct 1135 CCAGACACTGGATCTTTCTATGCCGGTACAGACTCTGGAGGAGAGTGTGGTGTTCCTGCA 1194
Query 1415 GAAACCATGTT-TGATTTTCCTGCTGAGAACAAAGCTAAGTTCTGGTACTCTGCGGATTA 1473
|| |||||||| | | |||||||||||||||| |||||| ||||||||| | |||||
Sbjct 1195 GAGACCATGTTCT-ACTTTCCTGCTGAGAACAGAGCTAAATTCTGGTACAGAACAGATTA 1253
Query 1474 TGGAATGTTTCGGTTCTGTGTAGCGGACACTGAACATGATTGGAGAGAAGGGTCAGAGCA 1533
|||||||| || || |||||||| |||| |||||| |||||||||||||| |||||||
Sbjct 1254 CGGAATGTTCCGCTTTTGTGTAGCAGACAGTGAACACGATTGGAGAGAAGGAACAGAGCA 1313
Query 1534 ATACCAATTCATAGAGCGTTGTCTTGCCTCTGTAGACAGAAGGGCTCAGCCTTGGTTGAT 1593
|||| ||||||| ||| ||| |||||| |||| || |||| | ||||||||||| | ||
Sbjct 1314 ATACAAATTCATCGAGAATTGCCTTGCCACTGTTGATAGAAAGACTCAGCCTTGGCTCAT 1373
Query 1594 TTTTATTGCTCATCGTGTTCTCGGTTATTCAACAAACGATTGGTATGGTC-AAGAAGGTT 1652
|||||| ||||| ||||| || |||||||| || || ||||||||||| | |||||||
Sbjct 1374 TTTTATAGCTCACCGTGTCCTTGGTTATTCCACCAATGATTGGTATGG-CAAAGAAGGAA 1432
Query 1653 CCTTTGAAGAACCTATGGGAAGAGAGAGCTTGCA-AAAGCTCTGGCAGAAGTATAAAGTA 1711
|||||||||| |||||||||||||| ||| | || ||| || ||||||||||| |||||
Sbjct 1433 CCTTTGAAGAGCCTATGGGAAGAGAAAGCCTACAGAAA-CTGTGGCAGAAGTACAAAGTT 1491
Query 1712 GACATCGCGTTCTACGGTCATGTTCATAACTATGAAAGAACATGCCCCATTTACCAGAAC 1771
||| | || |||||||| ||||| ||||||||||| |||| |||||||||||| ||| |
Sbjct 1492 GACCTTGCTTTCTACGGCCATGTCCATAACTATGAGCGAACCTGCCCCATTTACGAGAGC 1551
Query 1772 CAATGTATGGACAATGAGAAAAG-TCACTACTCA-GGAGCCTTCAAAGGAACTATACACG 1829
|||||| || ||||||| || | |||||||||| ||| ||||||||||||| || ||||
Sbjct 1552 CAATGTGTGAACAATGA-TAAGGATCACTACTCAGGGA-CCTTCAAAGGAACCATCCACG 1609
Query 1830 TGGTTGTTGGTGGTGCAGGAAGTCACTTGTCTTCGTTCAGCTCGCTGAAACCCAAGTGGA 1889
| |||||||||||||||||||||||||||||| |||||||||| ||| |||||| ||||
Sbjct 1610 TTGTTGTTGGTGGTGCAGGAAGTCACTTGTCTCCGTTCAGCTCACTGGTACCCAACTGGA 1669
Query 1890 GTATCTTCAGAGACTATGA-TTACGGGTTTGTGAAGTTGACGGCTTTTGATCACTCCTCT 1948
|| | ||||||| ||||| || ||||||||||||||||| |||| ||||||||| ||
Sbjct 1670 GTTTGGTCAGAGATTATGACTTT-GGGTTTGTGAAGTTGACTGCTTCTGATCACTCATCA 1728
Query 1949 CTTCTCTTCGAATACAAGAAAAGCAGCAATGG--A-GCTGTACATGACTCCTTCA-CTAT 2004
|||||||| || || ||||| ||||||| ||| | | |||| ||||||||||| | ||
Sbjct 1729 CTTCTCTTTGAGTATAAGAAGAGCAGCACTGGCCAAG-TGTA--TGACTCCTTCAAC-AT 1784
Query 2005 CTTTAGAGAATACAGAGATGTCTTGGCTTGTGTTCGA-GATAGCTGCGAGCCAACCACAT 2063
|| |||||| ||||||||||| |||||||| || | |||||||||||||| |||||||
Sbjct 1785 CTCTAGAGATTACAGAGATGTTTTGGCTTGCACTC-ATGATAGCTGCGAGCCCACCACAT 1843
Query 2064 TAGCTTCATGA 2074
||||||||||
Sbjct 1844 CAGCTTCATGA 1854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78008821760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5