BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50410.1
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916660 jgi|Araly1|916660|Al_scaffold_0008_1411 1177 0.0
> Ahg916660 jgi|Araly1|916660|Al_scaffold_0008_1411
Length=771
Score = 1177 bits (637), Expect = 0.0
Identities = 730/774 (94%), Gaps = 9/774 (1%)
Strand=Plus/Plus
Query 21 TCGAGTGACAAAACCCTAGAAGATGAAAAGGTGCAGCAGCAGCAATTGGAATCGGATGAC 80
||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 4 TCGAGTGACGAAACCCTAGAAGATGAAAA-GAG--GCAGCAGCAATTGGAATCGGATGAA 60
Query 81 AAAATCTCAAACACGAACCAACGAACAGAGCCATCTCAGGAATGGGAGACAATGGCTCGA 140
|||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AAAATCTCAAACCCGAACCAGCGAACAGAGCCATCTCAAGAATGGGAGACAATGGCTCGA 120
Query 141 GCTTGGGTCTCCGCTTTCCCCGACGCCAAAGCCGTTGTAAGCGCCGGCGAAGTCGAGACT 200
||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||
Sbjct 121 GCTTGGGTCTCCGCTTTCCCCGATGCCAAAGCCGTTGTAAGCTCTGGCGAAGTGGAGACT 180
Query 201 TGGATCGGCACCAACTTAGATTCCTTACCGGCGGATCTCCGTCACATGCCTCGCTCCGAG 260
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 181 TGGATCGGCACCAACTTAGATTCCTTACCGGCGGATCTCCGCCACATGCCTCGCTCTGAG 240
Query 261 ATTGTAGATCGTCTCCTCTCAATCCAACATTACATGAGACCAACACCATCATCTGATCAA 320
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCGTAGATCGTCTCCTCTCAATCCAACATTACATGAGACCAACACCATCATCTGATCAA 300
Query 321 AACGAGCAAAATGTGGAAGCAGATCAACAACATCCAGCTCGATTTCAGAGGACTGATCAA 380
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACGAGAAAAATGTGGAAGCAGATCAACAACATCCAGCTCGATTTCAGAGGACTGATCAG 360
Query 381 TGGTTACCAGTGTATTCGTGGTTAGAGTCATTGGATAATGGAGAGTTGGTGAAATCTAAG 440
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 TGGTTACCAGTGTATTCGTGGTTAGAGTCATTGGATCATGGAGAGTTGGTGAAATCTAAG 420
Query 441 GATATTTCTGAATGGCTTGATGCGAATCCTGAGGTTAAACAAGAACTTTCTTCTAGGCAT 500
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 GATATTTCTGAGTGGCTTGATGCCAATCCTGAGGTTAAACAAGAACTTTCTTCTAGGCAT 480
Query 501 TCTCGTTATCATTTGACTCATTATGTCAAGAAATGTCATCTCAAGATTCTTAAAAGGAAG 560
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 481 TCTCGTTATCATTTGACTCATTATGTCAAGAAATGTCATCTTAAGATACTTAAGAGGAAG 540
Query 561 GAGAAGAAGGGATTAATCCGGCTGAGCAGAGCTACTGCAATGGAAGTTCACAAAGAGTTT 620
||||||||||||||||||||||| ||| |||| ||||| ||||||||||||||||| |||
Sbjct 541 GAGAAGAAGGGATTAATCCGGCTAAGCCGAGCAACTGCCATGGAAGTTCACAAAGAATTT 600
Query 621 GGCGAGAAACACCAT-GCTACGCTTTCGGCTGATCCCA-TGAGCAACATACCGAAAGACA 678
||||||||||||| | ||||||||||| ||||| |||| ||||||||||||| |||||||
Sbjct 601 GGCGAGAAACACC-TCGCTACGCTTTCTGCTGA-CCCAATGAGCAACATACCAAAAGACA 658
Query 679 GTGACCTCTACCGCACAAAACAGAAAGAAGCTAAGCGCAGATTTGAGATCTTGGTTGAGC 738
||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 659 GTGACCTTTACCGGACGAAACAGAAAGAAGCTAAACGCAGATTTGAGATCTTGGTCGAGC 718
Query 739 TCGAGAAGAGACTGGCTCCGCA-TTTTGCAAAGCCTCGCATAGGAAACAGATGA 791
|||||||||||||||||||||| |||| |||||||||| |||||||||| ||||
Sbjct 719 TCGAGAAGAGACTGGCTCCGCACTTTT-CAAAGCCTCGGATAGGAAACAAATGA 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5