BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50420.1
Length=2169
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949587 jgi|Araly1|949587|scaffold_801474.1 2734 0.0
Ahg920643 jgi|Araly1|920643|scaffold_101924.1 1230 0.0
Ahg952166 jgi|Araly1|952166|scaffold_42900001.1 337 3e-91
Ahg949891 jgi|Araly1|949891|scaffold_801778.1 337 3e-91
Ahg922128 jgi|Araly1|922128|scaffold_103409.1 337 3e-91
Ahg892302 jgi|Araly1|892302|Al_scaffold_0006_298 296 4e-79
> Ahg949587 jgi|Araly1|949587|scaffold_801474.1
Length=1745
Score = 2734 bits (1480), Expect = 0.0
Identities = 1652/1737 (95%), Gaps = 3/1737 (0%)
Strand=Plus/Plus
Query 208 TTCACTCTTCGGCGATGGAGCGAAACTCGTCGGACGACGAAGAAGACCACCAGCATTTGA 267
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 10 TTCACTCTTCGGCGATGGAGCGAAACTCGTCGGACGATGAAGAAGACCACCAGCATTTGA 69
Query 268 TTCCCCAAAACGACACTCGAATCCGTCACCGGGAGGATTCAGTTTCCTCCAACGCCACCA 327
||||||||||||| |||||||||||||||||||| ||| || ||||||||| ||||| ||
Sbjct 70 TTCCCCAAAACGATACTCGAATCCGTCACCGGGAAGATCCAATTTCCTCCACCGCCA-CA 128
Query 328 -CAATCGGCGGGAATCAGAGATCGGCGTTTCAGATCGACGACATTTTACATCGAGTCCAA 386
||| ||||||||||||||||||||||||||||||||| |||||||| || |||| |||
Sbjct 129 CCAACCGGCGGGAATCAGAGATCGGCGTTTCAGATCGAAGACATTTTGCAGAGAGTTCAA 188
Query 387 CACCGTGGGAAGATCTCGCTCAACAAGCGTTACGTCATTGTCTTCGTTTCTCTAATTATC 446
| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 189 CGCCGTTGGAAGATCTCGCTCAATAAGCGTTACGTCATTGTCTTCGTCTCTCTAATTATC 248
Query 447 TCAATCGGTCTTCTCTTCTTACTCACTGATCCTCGTGAACTATTTGCGGCGAATTTCTCG 506
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 249 TCAATCGGTCTTCTCTTCTTACTCACTGATCCTCGTGAACTATTTTCTGCGAATTTCTCG 308
Query 507 AGTTTTAAGCTGGATCCATTGTCGAATCGTGTCAAAGAATCTGAGCTTCGTGCTTTGTAT 566
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 309 AGTTTTAAGCTGGATCCATTGTCGAATCGTGTCAAGGAATCTGAGCTTCGTGCTTTGTAT 368
Query 567 CTTCTGAGACAACAACAGCTCGCGCTTCTATCTCTTTGGAATGGTACGTTGGTGAATCCT 626
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 369 CTTCTGAGACAACAACAGCTTGCGCTTCTCTCTCTTTGGAACGGTACGTTGGTGAATCCT 428
Query 627 TCTCTTAATCAATCTGAGAACGCTTTGGGATCGTCTGTTTTGTTTGAGGATGTGAAATCT 686
|||||||||||||| ||||| | |||| |||||||||| |||||||||||||||||||||
Sbjct 429 TCTCTTAATCAATCGGAGAATGATTTGAGATCGTCTGTGTTGTTTGAGGATGTGAAATCT 488
Query 687 GCTGTTTCGAAGCAGATTTCATTGAATAAGGAGATCCAAGAGGTGCTTCTATCACCACAC 746
||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 489 GCTGTATCGAAGCAGATTTCATTGAATAAGGAGATCCAAAATGTGCTTCTATCACCACAC 548
Query 747 CGGAGTAGCAATTACTCCGGTGGCACCGATGTTGATTCGGTGAATTTCTCATATAATAGA 806
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 549 AGGAGTAGCAATTACTCCGGTGGCACGGAAGTTGATTCGGTGAATTTCTCATACGATAGA 608
Query 807 TGTAGAAAAGTGGATCAGAAGTTGTCAGATCGGAAAACTGTAGAGTGGAAGCCTAGATCT 866
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 609 TGTAGAAAAGTGGATCAGAAGTTGTCAGATCGGAAAACTGTAGAGTGGAAGCCGAGATCG 668
Query 867 GATAAGTTTCTATTCGCTATTTGTCTCTCAGGTCAAATGAGTAACCATTTGATATGTTTA 926
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 669 GATAAGTTTCTATTCGCTATATGTCTCTCAGGTCAAATGAGTAACCATTTGATTTGCTTA 728
Query 927 GAGAAACATATGTTCTTTGCTGCATTGCTGGATCGAGTTTTGGTGATACCTAGCTCTAAG 986
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 729 GAGAAACATATGTTCTTTGCTGCATTGTTGGATCGAGTTTTGGTGATACCTAGCTCAAAG 788
Query 987 TTTGATTACCAGTATGATAGAGTGATAGATATAGAGCGGATTAACACTTGCTTGGGAAGA 1046
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct 789 TTTGATTACCAGTATGATAGAGTGATAGACATAGAGCGGATTAATACTTGCTTGGGACGA 848
Query 1047 AATGTTGTTGTTGCTTTTGATCAGTTTAAGGAAAAGGCGAAAAAGAATCATTTTCGGATT 1106
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 849 AATGTTGTTGTTTCTTTTGATCAATTTAAGGAAAAGGCGAAAAAGAATCATTTTCGTATT 908
Query 1107 GATCGGTTCATATGTTACTTTTCATCACCACAGCTTTGTTATGTGGATGAGGAACATATT 1166
|| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 909 GACCGGTTCATATGTTACTTCTCGTCACCACAGCTTTGTTATGTGGATGAGGAGCATATT 968
Query 1167 AAAAAGCTGAAAGGTTTGGGGATTTCCATTGATGGGAAGCTTGAGGCTCCTTGGAGTGAA 1226
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 AAGAAGCTGAAAGGTTTGGGGATTTCCATTGATGGGAAGCTTGAGGCTCCTTGGAGTGAA 1028
Query 1227 GACATAAAGAAGCCGAGCAAGAGAACTGTGCAAGACGTCCAGATGAAGTTTAAGTCTGAT 1286
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1029 GACATAAAGAAGCCGAGCAAGAGAACTGTGCAAGACGTACAGACAAAGTTTAAGTCTGAT 1088
Query 1287 GATGATGTGATTGCAATCGGGGATGTCTTCTATGCTGATATGGAGCAAGATTGGGTGATG 1346
||||| ||||| || ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1089 GATGACGTGATCGCCATCGGGGATGTTTTCTATGCTGATATGGAGCAAGATTGGGCGATG 1148
Query 1347 CAACCTGGTGGACCTATTAACCACAAGTGTAAGACACTAATCGAACCTAGTAAGCTGATC 1406
|| |||||||||||||||||||||||||| ||||| || |||||||| |||||||||||
Sbjct 1149 CAGCCTGGTGGACCTATTAACCACAAGTGCAAGACCCTGATCGAACCCAGTAAGCTGATT 1208
Query 1407 TTGTTGACCGCACAGAGATTCATCCAGACCTTCTTGGGAAAGAATTTCATCGCACTTCAT 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TTGTTGACCGCACAGAGATTCATCCAGACCTTCTTGGGAAAGAATTTCATCGCACTTCAT 1268
Query 1467 TTCCGCAGACATGGGTTCCTCAAATTTTGCAATGCAAAATCGCCAAGTTGCTTCTATCCA 1526
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1269 TTTCGCAGACATGGGTTCCTCAAATTCTGCAATGCAAAATCTCCAAGTTGCTTCTATCCA 1328
Query 1527 ATTCCACAAGCTGCAGAGTGCATCGCTCGGATAGTGGAAAGATCCAATGGCGCAGTCATC 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 ATTCCACAAGCTGCAGAGTGCATCGCTCGGATAGTGGAAAGATCCAATGGCGCAGTCATC 1388
Query 1587 TATCTTTCAACAGATGCTGCAGAAAGTGAGACAAGTCTGCTTCAGTCACTTGTTGTGGTA 1646
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1389 TATCTTTCAACAGATGCTGCAGAAAGTGAAACAAGTCTGCTTCAGTCACTTGTTGTGGTA 1448
Query 1647 GATGGAAAAATTGTGCCTCTTGTCAAACGTCCACCGCGTAATTCAGCTGAAAAGTGGGAT 1706
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1449 GATGGAAAAATTGTGCCTCTTGTCAAACGTCCACCTCGTAATTCAGCTGAAAAGTGGGAC 1508
Query 1707 GCATTGTTATATCGACATGGTATAGAGGATGACTCTCAGGTGGATGCAATGCTTGATAAA 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 GCATTGTTATATCGACATGGTATAGAGGATGACTCTCAGGTGGATGCAATGCTTGATAAA 1568
Query 1767 ACGATATGCGCCATGTCCAGCGTATTCATTGGAGCCTCGGGATCAACTTTCACAGAAGAT 1826
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1569 ACAATATGCGCCATGTCCAGCGTCTTCATTGGAGCCTCGGGATCAACTTTCACAGAGGAT 1628
Query 1827 ATATTGAGGCTAAGGAAAGATTGGGGAACATCCTCTACGTGCGATGAGTACCTCTGCCGA 1886
|| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1629 ATCTTGAGACTAAGGAAAGATTGGGGAACATCCTCTACATGCGATGAGTACCTCTGTCGA 1688
Query 1887 GGGGAAGAGCCAAACTTTATAGCAGAAGATGAATAAGTAAGCACAt-ttttttCTTA 1942
|| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1689 GGAGAAGAGCCAAACTTCATAGCAGAAGATGAATAAGTAAGCACATCTTTTTTCTTA 1745
> Ahg920643 jgi|Araly1|920643|scaffold_101924.1
Length=1797
Score = 1230 bits (666), Expect = 0.0
Identities = 1322/1629 (81%), Gaps = 84/1629 (5%)
Strand=Plus/Plus
Query 333 GGCGGGAATCAGAGATCGGCGTTTCAGATCGACGACATTTTA-CATCGAG-TCCAACACC 390
||| ||| || ||||||||||||||||||||| || || || | |||| || || |||
Sbjct 168 GGCAGGAGTCCGAGATCGGCGTTTCAGATCGATGAAATCGTATC-GCGAGCTCGAA-ACC 225
Query 391 GTGGGAAGATCTC-GCTCAACAAGCGTTACGTCATTGTCT-TCGTTTCTCTAA-T-TATC 446
|| |||| ||||| | | ||||||||||||||| ||| || ||| ||||||| | | |
Sbjct 226 GTTGGAAAATCTCAG-TTAACAAGCGTTACGTCGTTG-CTGCCGTCTCTCTAACTCTGT- 282
Query 447 TCAATCGGTCT-TCTCTTCTTACTCACTGATCCTCGTGA-ACTATT-TGC-GGCGAATTT 502
|| | || | ||| |||||| | |||||| ||||| | | | || | | | | || |
Sbjct 283 TC-GTTGG-ATATCTGTTCTTATTTACTGATACTCGT-AGATTCTTCT-CAGTAG-ATCT 337
Query 503 CTCGAGTTTTAAGCTGGATCCATTGTCGAATCGTGTCAAAGAATCTGAGCTTCGTGCTTT 562
|||||| |||||||| |||||| |||||| ||| ||||| ||||||||||| | ||| |
Sbjct 338 CTCGAGCTTTAAGCTTGATCCAATGTCGAGTCGGGTCAAGGAATCTGAGCTCCAAGCTCT 397
Query 563 GTATCTTCTGAGACAACAACAGCTCGCGCTTCTATCTCT-TTGGAATGGTACGTTGGTGA 621
| |||||||||| |||||||||||||| ||| | ||||| || ||| || | | |
Sbjct 398 GAATCTTCTGAGGCAACAACAGCTCGCACTTGTCTCTCTGTT-GAA----CCG-T-GCG- 449
Query 622 ATCCTTCTCTTAATCAATCTGAGAACGC-TTTGGGATCGTCTGTTTTGTTTGAGGATGTG 680
|| || || ||| ||| ||| || || || || ||||| || | || |||||
Sbjct 450 AT--TT-TC--AAT---TCTTCGAATGCAATT-GGTTCTTCTGTATTAATAGACAATGTG 500
Query 681 AAATCTGCTGTTTC-GAAGCAGATTTCA-TTGAATAAGGAGATCCAAGAGGTGCTTCTAT 738
||| ||||| | | ||||||||||||| || |||||||| ||| ||||||| ||||| |
Sbjct 501 AAAGCTGCT-CTACTGAAGCAGATTTCAGTT-AATAAGGAAATCGAAGAGGTCCTTCTTT 558
Query 739 CACCACACCGGAGTAGCAATTACTCCGGTGGCACCGATGT-TGATTC-GGT-G-A--A-T 791
|||||||| || | | ||||||| | || ||| | | | || ||| | | | | | |
Sbjct 559 CACCACACAAGACTGGGAATTACT-CAGT--CACTGGT-TCTGGTTCAGATAGTATCACT 614
Query 792 --TTC-T-C-A-TATAATAGATGTAGAAAA-GTGGATCAGAAGTTGTCAGATCGGAAAAC 844
||| | | | || |||| |||| |||| || ||||||||||||| || ||||||||
Sbjct 615 GGTTCTTACTACGATGATAGGTGTA-AAAAGGTAGATCAGAAGTTGTTGGAGCGGAAAAC 673
Query 845 TG-TAGAGTGGAAGCCTAGATCTGATAAGTTTCTATTCGCTATTTGTCTCTCAGGTCAAA 903
| | || |||||||| ||| | |||||||| || || ||||| ||||||||||||||||
Sbjct 674 -GATCGAATGGAAGCCGAGACCAGATAAGTTCCTTTTTGCTATCTGTCTCTCAGGTCAAA 732
Query 904 TGAGTAACCATTTGATATGTTTAGAGAAACATATGTTCTTTGCTGCATTGCTGGATCGAG 963
|||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 733 TGAGTAACCACTTGATTTGCTTAGAGAAACATATGTTCTTTGCTGCGCTGCTGGATCGAG 792
Query 964 TTTTGGTGATACCTAGCTCTAAGTTTGATTACCAGTATGATAGAGTGATAGATATAGAGC 1023
|| | ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TTCTCGTGATTCCAAGCTCTAAGTTTGATTACCAGTATGATAGAGTGATAGATATAGAGC 852
Query 1024 GGATTAACACTTGCTTGGGAAGAAATGTTGTTGTTGCTTTTGATCAGTTTAAGGAAAAGG 1083
||||||| || ||||||||||||| |||||| || ||||||||||||| ||||| | |
Sbjct 853 GGATTAATACGTGCTTGGGAAGAACTGTTGTCATTTCTTTTGATCAGTTCAAGGAGATTG 912
Query 1084 CGAAAAAGAATCATTTTCGGATTGAT-CGGTTCATATGTTACTTTTCATCACCACAGCTT 1142
|| ||||| || || ||||| || ||||| |||||||| ||||| ||||||| |
Sbjct 913 ATAAGAAGAAAAATGCTCACATTGACACG-TTCATCTGTTACTTCTCATCGCCACAGCCT 971
Query 1143 TGTTATGTGGATGAGGAACATATTAAAAAGCTGAAAGGTTTGGGGATTTCCATTGATGGG 1202
||||||||||||||||| ||||| || ||||| || || |||||| ||||||||| ||||
Sbjct 972 TGTTATGTGGATGAGGATCATATCAAGAAGCTCAAGGGATTGGGGGTTTCCATTGGTGGG 1031
Query 1203 AAGCTTGAGGCTCCTTGGAGTGAAGACATAAAGAAGCCGAGC-AAGAGAACTG-TGCAAG 1260
||||||||||||||||||| |||||| ||||||||||| | | ||| ||||| | ||||
Sbjct 1032 AAGCTTGAGGCTCCTTGGATTGAAGATATAAAGAAGCCAA-CTAAGCGAACTTCT-CAAG 1089
Query 1261 ACGTCCAGATG-AA--GTTTAAGTCTGATGATGATGTGATTGCAATCGGGGATGTCTTCT 1317
| || || || || ||||||||||||||||| |||||| || || |||||||||||||
Sbjct 1090 AGGT--AG-TGGAAAAGTTTAAGTCTGATGATGGTGTGATCGCCATAGGGGATGTCTTCT 1146
Query 1318 ATGCTGATATGGAGCAAGATTGGGTGATGCAACCTGGTGGACCTATTAACCACAAGTGTA 1377
||||||||||||||||||||| ||||||||| ||||||||||| || || ||||| ||||
Sbjct 1147 ATGCTGATATGGAGCAAGATTTGGTGATGCAGCCTGGTGGACCCATCAATCACAAATGTA 1206
Query 1378 AGACACTAATCGAACCTAGTAAGCTGATCTTGTTGACCGCACAGAGATTCATCCAGACCT 1437
| ||||| |||||||| |||| ||| || ||| |||| |||||| ||||||||||||| |
Sbjct 1207 AAACACTGATCGAACCCAGTAGGCTCATTTTGGTGACGGCACAGCGATTCATCCAGACAT 1266
Query 1438 TCTTGGGAAAGAATTTCATCGCACTTCATTTCCGCAGACATGGGTTCCTCAAATTTTGCA 1497
|||| ||||||||||||||| | |||||| |||| |||||||||||||| || || ||||
Sbjct 1267 TCTTAGGAAAGAATTTCATCTCGCTTCATCTCCGTAGACATGGGTTCCTTAAGTTCTGCA 1326
Query 1498 ATGCAAAATCGCCAAGTTGCTTCTATCCAATTCCACAAGCTGCAGAGTGCATC-GCTCGG 1556
|||||||||||||||||||||| ||||| || |||||||||||||| |||||| | ||||
Sbjct 1327 ATGCAAAATCGCCAAGTTGCTTTTATCCCATACCACAAGCTGCAGACTGCATCAG-TCGG 1385
Query 1557 ATAGTGGAAAGATCCAATGGCGC-AGTCATCTATCTTTCAACAGATGCTGCAGAAAGTGA 1615
|| |||||||| |||||| | | ||||||||| ||||||||||||||||||||||| ||
Sbjct 1386 ATGGTGGAAAGGGCCAATG-CTCCAGTCATCTACCTTTCAACAGATGCTGCAGAAAGCGA 1444
Query 1616 GACAAGTCTGCTTCAGTCACTTGTTGTGGTAGATGGAAAAATTGTGCCTCTTGTCAAACG 1675
|| |||||||||||||||| || || || ||||||||| | || || |||||||||||
Sbjct 1445 AACCGGTCTGCTTCAGTCACTAGTAGTCGTTGATGGAAAAGTCGTTCCCCTTGTCAAACG 1504
Query 1676 TCCACCGCGTAATTCAGCTGAAAAGTGGGA-TGCATTGTTATATCGACATGGTATAGAGG 1734
|||||| || || || || ||||||||||| | | ||||| ||| ||||||||||||| |
Sbjct 1505 TCCACCTCGCAACTCTGCAGAAAAGTGGGACT-CGTTGTTGTATAGACATGGTATAGAAG 1563
Query 1735 ATGACTCTCAGGTGGATGCAATGCTTG-ATAAAACGATATGCGCCATGTCCAGCGTATTC 1793
||||||||||||||||||| ||| ||| |||| || ||||| || |||||||| || |||
Sbjct 1564 ATGACTCTCAGGTGGATGCTATG-TTGGATAAGACTATATGTGCAATGTCCAGTGTCTTC 1622
Query 1794 ATTGGAGCCTCGGGATCAACTTTCACAGAAGATATATTGAGGCTAAGGAAAGATTGGGGA 1853
|||||||| ||||| || ||||| ||||| ||||| ||| ||||||| ||||| ||||||
Sbjct 1623 ATTGGAGCATCGGGTTCTACTTTTACAGAGGATATCTTGCGGCTAAGAAAAGACTGGGGA 1682
Query 1854 ACATCCTCTACGTGCGATGAGTACCTCTGCCGAGGGGAAGAGCCAAACTTTATAGCAGAA 1913
|| || || | |||||||||||| ||||| |||| ||||| |||||||| ||||| |||
Sbjct 1683 ACTTCATCGATGTGCGATGAGTATCTCTGTAGAGGTGAAGAACCAAACTTCATAGCTGAA 1742
Query 1914 GATGAATAA 1922
||||||||
Sbjct 1743 AATGAATAA 1751
> Ahg952166 jgi|Araly1|952166|scaffold_42900001.1
Length=340
Score = 337 bits (182), Expect = 3e-91
Identities = 210/224 (94%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 508 GTTTTAAGCTGGATCCATTGTCGAATCGTGTCAAAGAATCTGAGCTTCGTGCTTTGTATC 567
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct 67 GTTTTAAGCTGGATCCATTGTCGAATCGTGTCAAGGAATCTGAGCTTTGTGCTTTTTATC 126
Query 568 TTCTGAGACAACAACAGCTCGCGCTTCTATCTCTTTGGAATGGTACGTTGGTGAATCCTT 627
|||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 127 TTCTGAGACAACAACATCTTTCGCTTCTCTCTCTTTGGAATGGTACGTTGGTGAATCCTT 186
Query 628 CTCTTAATCAATCTGAGAACGCTTTGGGATCGTCTGTTTTGTTTGAGGATGTGAAATCTG 687
||||||||||||| ||||| ||||||||||| | ||| |||||||| |||||||||||||
Sbjct 187 CTCTTAATCAATCGGAGAATGCTTTGGGATCATTTGTGTTGTTTGAAGATGTGAAATCTG 246
Query 688 CTGTTTCGAAGCAGATTTCATTGAATAAGGAGATCCAAGAGGTG 731
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct 247 CTGTTTCGAAGCAGATTTCATTGAATAAAGAGATCCAAGAGGTG 290
> Ahg949891 jgi|Araly1|949891|scaffold_801778.1
Length=340
Score = 337 bits (182), Expect = 3e-91
Identities = 210/224 (94%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 508 GTTTTAAGCTGGATCCATTGTCGAATCGTGTCAAAGAATCTGAGCTTCGTGCTTTGTATC 567
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||
Sbjct 67 GTTTTAAGCTGGATCCATTGTCGAATCGTGTCAAGGAATCTGAGCTTTGTGCTTTTTATC 126
Query 568 TTCTGAGACAACAACAGCTCGCGCTTCTATCTCTTTGGAATGGTACGTTGGTGAATCCTT 627
|||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 127 TTCTGAGACAACAACATCTTTCGCTTCTCTCTCTTTGGAATGGTACGTTGGTGAATCCTT 186
Query 628 CTCTTAATCAATCTGAGAACGCTTTGGGATCGTCTGTTTTGTTTGAGGATGTGAAATCTG 687
||||||||||||| ||||| ||||||||||| | ||| |||||||| |||||||||||||
Sbjct 187 CTCTTAATCAATCGGAGAATGCTTTGGGATCATTTGTGTTGTTTGAAGATGTGAAATCTG 246
Query 688 CTGTTTCGAAGCAGATTTCATTGAATAAGGAGATCCAAGAGGTG 731
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct 247 CTGTTTCGAAGCAGATTTCATTGAATAAAGAGATCCAAGAGGTG 290
> Ahg922128 jgi|Araly1|922128|scaffold_103409.1
Length=341
Score = 337 bits (182), Expect = 3e-91
Identities = 210/224 (94%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 508 GTTTTAAGCTGGATCCATTGTCGAATCGTGTCAAAGAATCTGAGCTTCGTGCTTTGTATC 567
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 68 GTTTTAAGCTGGATCCATTGTCGAATCGTGTCAAGGAATCTGAGCTTCGTGCTTTTTATC 127
Query 568 TTCTGAGACAACAACAGCTCGCGCTTCTATCTCTTTGGAATGGTACGTTGGTGAATCCTT 627
|||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||
Sbjct 128 TTCTGAGACAACAACATCTTTCGCTTCTCTCTCTTTGGAATGGTACGTTGGTGAATCCTT 187
Query 628 CTCTTAATCAATCTGAGAACGCTTTGGGATCGTCTGTTTTGTTTGAGGATGTGAAATCTG 687
||||||||||||| ||||| | ||||||||| | ||| |||||||| |||||||||||||
Sbjct 188 CTCTTAATCAATCGGAGAATGTTTTGGGATCATTTGTGTTGTTTGAAGATGTGAAATCTG 247
Query 688 CTGTTTCGAAGCAGATTTCATTGAATAAGGAGATCCAAGAGGTG 731
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct 248 CTGTTTCGAAGCAGATTTCATTGAATAAAGAGATCCAAGAGGTG 291
> Ahg892302 jgi|Araly1|892302|Al_scaffold_0006_298
Length=291
Score = 296 bits (160), Expect = 4e-79
Identities = 182/193 (94%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 539 CAAAGAATCTGAGCTTCGTGCTTTGTATCTTCTGAGACAACAACAGCTCGCGCTTCTATC 598
||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 69 CAAGGAATCTGAGCTTCGTGCTTTGTATCTTCTGAGACAACAACATCTTTCGCTTCTCTC 128
Query 599 TCTTTGGAATGGTACGTTGGTGAATCCTTCTCTTAATCAATCTGAGAACGCTTTGGGATC 658
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 129 TCTTTGGAATGGTACGTTGGTGAATCCTTCTCTTAATCAATCGGAGAATGCTTTGGGATC 188
Query 659 GTCTGTTTTGTTTGAGGATGTGAAATCTGCTGTTTCGAAGCAGATTTCATTGAATAAGGA 718
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 189 ATTTGTGTTGTTTGAGGATGTGAAATCTGCTGTTTCGAAGCAGATTTCATTGAATAAAGA 248
Query 719 GATCCAAGAGGTG 731
|||||||||||||
Sbjct 249 GATCCAAGAGGTG 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81627395035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5