BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50430.1
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495109 jgi|Araly1|495109|fgenesh2_kg.8__925__AT5G50430.1 1615 0.0
Ahg471931 jgi|Araly1|471931|fgenesh2_kg.1__1885__AT1G17280.1 736 0.0
> Ahg495109 jgi|Araly1|495109|fgenesh2_kg.8__925__AT5G50430.1
Length=1169
Score = 1615 bits (874), Expect = 0.0
Identities = 1068/1157 (92%), Gaps = 31/1157 (3%)
Strand=Plus/Plus
Query 67 CGAATGATTTGATCATCAATCAACGA-GA-AACACACACGGAGAAAGAGAATCTCAAATT 124
||||||||||||||||| |||| ||| || || ||||| ||| ||||||||| |||||
Sbjct 35 CGAATGATTTGATCATC-ATCATCGACGAGAA-ACACA--GAG--AGAGAATCTTAAATT 88
Query 125 AGCTCCAGCTCCTGATCGATTCCGATTT-TCACAATTCTTTCCTTGGATCTGCTCTTACC 183
|||| |||||||||||| || |||||| ||||||||| |||||||||||||||||||||
Sbjct 89 CGCTCTAGCTCCTGATCGGTTTCGATTTGTCACAATTC-TTCCTTGGATCTGCTCTTACC 147
Query 184 TTGTCACGATTTCACTTCCCTG-TGTTTTTGA-TTTATACT-TG--GTCATCCAATAACG 238
| || || | |||||| ||| ||||| | ||| | | || || | |||| ||
Sbjct 148 TAGTTACCA-ATCACTTGGCTGCCATTTTT-ATTTTTTTTTCTGCAGT-TTACAAT-TCG 203
Query 239 AAACTTTGATCAAACTGGAACTACAGTTTATTGGAACTCCCTGAAGCATTTAGATGGCAG 298
|||||| ||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 204 TTGTTTTGAT-TAACTGGAACTACAATTAATTGGATCTCCCTGAAGCATTTAGATGGCAG 262
Query 299 AAAAAGCTTGTATAAAGCGTCTTCAAAAAGAATACAGAGCGCTTTGCAAGGAACCAGTCT 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 263 AAAAAGCTTGTATAAAGCGTCTTCAAAAAGAATACAGAGCACTTTGCAAGGAACCAGTCT 322
Query 359 CGCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTTGAATGGCATTATGTGTTGGAAG 418
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 323 CGCATGTTGTTGCTCGGCCTTCCCCAAATGACATTCTTGAGTGGCATTATGTGTTGGAAG 382
Query 419 GCAGTGAGGGAACGCCTTTTGCAGGTGGATTTTACTATGGAAAGATCAAGTTCCCTCCAG 478
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 383 GCAGTGAGGGAACACCTTTTGCAGGTGGATTTTACTATGGGAAGATCAAGTTCCCTCCAG 442
Query 479 AATATCCTTACAAGCCACCTGGAATCACAATGACCACACCAAATGGTCGATTTGTGACGC 538
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 443 AATATCCTTACAAGCCACCTGGAATAACAATGACCACACCAAATGGTCGATTTGTGACAC 502
Query 539 AAAAGAAAATCTGCTTGTCTATGAGTGACTTTCATCCAGAAAGCTGGAATCCAATGTGGT 598
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 AAAAGAAAATCTGTTTGTCTATGAGTGACTTTCATCCAGAAAGCTGGAATCCAATGTGGT 562
Query 599 CAGTGTCAAGCATACTTACAGGACTTCTCTCATTTATGATGGATAACAGCCCCACAACGG 658
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 563 CAGTGTCAAGCATACTTACAGGACTTCTCTCATTTATGATGGACAACAGCCCCACAACGG 622
Query 659 GAAGTGTAAACACTAGTGTAGCCGAGAAACAACGGTTGGCGAAGTCATCTCTTGCTTTCA 718
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
Sbjct 623 GAAGTGTAAACACTAGTGTAGCCGATAAACAACAGTTGGCGAAGTCATCTCTTGCTTTTA 682
Query 719 ATTGTAAAAGTGTAACATTCCGGAAACTATTTCCCGAGTATGTCGAGAAGTACAGCCAGC 778
||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 683 ATTGTAAAAATGCAACATTCCGGAAACTATTTCCCGAGTATGTAGAGAAGTACAGCCAGC 742
Query 779 AACAAGTAGCTGAAGAAGAAGCAGCCACTCAACAGACAACAACATCTGAGAATCAGGATT 838
|||||||||||||||| |||||||||||||||||||||||| | ||||| | |||
Sbjct 743 AACAAGTAGCTGAAGAGGAAGCAGCCACTCAACAGACAACA-C--CTGAG-----G-ATT 793
Query 839 TTCCTCAGAAGGACAATGCGAAAGTCGAATCAGAGAAAAGCGTTGGTCTTAAAAAGGAAA 898
||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 794 CTCCTCAGGAGGAAAATGCGAAAGTCGAATCAGAGAAAAGCATTGGTCTTAAAAAGGACA 853
Query 899 GTATTCAAGAAGTGGGATTGAAAGAGAGGAGAAGGAACAAGAAAGAAGCATTACCGGGTT 958
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 854 GTATTCAAGAAGTGGGATTGAAAGAGAGGAGAAAGAACAAGAAAGAAGCATTACCGGGTT 913
Query 959 GGATAGTATTGTTGCTAGTATCGATTGTCGGTGTTGTAATGGCGTTGCCTTTGCTTCAGC 1018
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 914 GGATAGTATTGCTGCTAGTATCGATTGTCGGTGTTGTAATGGCGTTGCCTTTGCTTCAAC 973
Query 1019 TGTGATTTAGATGCAAATGCAACGCAACACAACATGACTGCAAATCAATCTGGTAAAATC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 TGTGATTTAGATGCAAATGCAACGCAACACAACATGACTGCAAATCAATCTGGTAAAATC 1033
Query 1079 TGTTTATCATTGTCTCTCAGTCTCAGTACTAAGTAGTGTCTTTTGTTCTTCCCCCT-CTC 1137
|||||||||| |||||||| ||||||||||||||||||||||||||| | |||||| |||
Sbjct 1034 TGTTTATCATCGTCTCTCACTCTCAGTACTAAGTAGTGTCTTTTGTTAT-CCCCCTTCTC 1092
Query 1138 TTGAAAAGAAAACAGATACATTGAGTTTGGTATGGCATTTGAAGTTACGTATAAATATAA 1197
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1093 TTGAAAAGAAAACAGATACATTGAGTTTGGTATGGCATTTGAAATTACATATAAATATAA 1152
Query 1198 ATGTTAGCTTAATTTGA 1214
||||||||| |||||||
Sbjct 1153 ATGTTAGCTGAATTTGA 1169
> Ahg471931 jgi|Araly1|471931|fgenesh2_kg.1__1885__AT1G17280.1
Length=1112
Score = 736 bits (398), Expect = 0.0
Identities = 642/757 (85%), Gaps = 28/757 (4%)
Strand=Plus/Plus
Query 283 AGCATTTAGATGGCAGAAAAAGCTTGTATAAAGCGTCTTCAAAAAGAATACAGAGCGCTT 342
|||| ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| |||
Sbjct 135 AGCACTTAGATGGCAGAAAAGGCTTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTT 194
Query 343 TGCAAGGAACCAGTCTCGCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTTGAATGG 402
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 195 TGCAAGGAACCTGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGG 254
Query 403 CATTATGTGTTGGAAGGCAGTGAGGGAACGCCTTTTGCAGGTGGATTTTACTATGGAAAG 462
||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 255 CATTATGTGCTGGAAGGTAGTGAGGGAACACCTTTTGCAGGTGGATTTTACTATGGAAAG 314
Query 463 ATCAAGTTCCCTCCAGAATATCCTTACAAGCCACCTGGAATCACAATGACCACACCAAAT 522
|||||||| ||||| || |||||||||||||||||||| || |||||||| |||||||||
Sbjct 315 ATCAAGTTTCCTCCTGAGTATCCTTACAAGCCACCTGGGATTACAATGACTACACCAAAT 374
Query 523 GGTCGATTTGTGACGCAAAAGAAAATCTGCTTGTCTATGAGTGACTTTCATCCAGAAAGC 582
|||||||| |||| |||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 375 GGTCGATTCATGACACAAAAGAAAATCTGTTTGTCTATGAGTGATTTTCACCCAGAAAGC 434
Query 583 TGGAATCCAATGTGGTCAGTGTCAAGCATACTTACAGGACTTCTCTCATTTATGATGGAT 642
||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 435 TGGAACCCTATGTGGTCTGTGTCAAGCATACTTACAGGCCTTCTCTCATTTATGATGGAT 494
Query 643 AACAGCCCCACAACGGGAAGTGTAAACACTAGTGTAGCCGAGAAACAACGGTTGGCGAAG 702
| ||| || ||||| |||||||| ||||||| |||||| ||||||||||||||||| |||
Sbjct 495 ACCAGTCCGACAACTGGAAGTGTGAACACTACTGTAGCTGAGAAACAACGGTTGGCTAAG 554
Query 703 TCATCTCTTGCTTTCAATTGTAAAAGTGTAACATTCCGGAAA-CTATTTCCCGAGTATGT 761
|||||||| |||||||||||||||| | |||| || ||| |||||||| ||||||||
Sbjct 555 TCATCTCTAGCTTTCAATTGTAAAACCCCAGCATTTCG-AAAGCTATTTCCAGAGTATGT 613
Query 762 CGAGAAGTACAGCCAGCAACAAGTAGCTGAAGAAGAAGCAGCCACTCAACAGACAACAAC 821
|||||||||| |||||| ||| ||||||| | | | || ||||| ||| ||||||| |
Sbjct 614 AGAGAAGTACAACCAGCAGCAACTAGCTGA-GCA-A-GCTGCCACACAAGTGACAACACC 670
Query 822 ATCTGAGAATCAGGATTTTCCTCAGAAG-GACAATGCGAAAGTCGAATCAGAGAAAAGCG 880
| ||| || | ||||| ||| | | || | |||||||| |||||||||| |
Sbjct 671 A---GAG--TC----T---CCTCAAAAGAG-CGATACCAAAGTCGAGTCAGAGAAAACCA 717
Query 881 TTGGTCTTAAA-AAGGAAAGTATTCAAGAAG-TGGGATTGAAAGAGAGGAGAAGGAACAA 938
| | || || ||||| | | ||| |||| ||| ||||| ||||||| || ||||||
Sbjct 718 TCGATCC-AACTAAGGAG-G-ACTCA-GAAGGTGGC-TTGAAGGAGAGGAAAAAGAACAA 772
Query 939 GAAAGAAGCATTACCGG-GTTGGATAGTATTGTTGCTAGTATCGATTGTCGGTGTTGTAA 997
|||| | | ||| || | || ||||| || |||||||||| ||| || ||||||||||||
Sbjct 773 GAAACAGGGATTGCCAGCGT-GGATAATACTGTTGCTAGTGTCGGTTTTCGGTGTTGTAA 831
Query 998 TGGCGTTGCCTTTGCTTCAGCTGTGATTTAGATGCAA 1034
||||||||||||| ||||| |||| |||| ||||||
Sbjct 832 TGGCGTTGCCTTTACTTCAACTGTAATTTCTATGCAA 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45404394147
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5