BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50440.1
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495111 jgi|Araly1|495111|fgenesh2_kg.8__927__AT5G50440.1 1293 0.0
Ahg482673 jgi|Araly1|482673|fgenesh2_kg.4__1733__AT2G36900.1 708 0.0
> Ahg495111 jgi|Araly1|495111|fgenesh2_kg.8__927__AT5G50440.1
Length=856
Score = 1293 bits (700), Expect = 0.0
Identities = 808/860 (94%), Gaps = 7/860 (1%)
Strand=Plus/Plus
Query 88 GATTAGAAGTTGATATTGATATAATTCAGCAAAGAGAAGAAGATTCTGCGGTGTTCTTGG 147
||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1 GATTAGAAGTTGACATTCATATAATTCAGCAAA-AGAAGAAGATTCTGCGGTTTTCTTGG 59
Query 148 TCAC-TTTGTGGTTTGTATAATGGCGTCTGGGACAGTGGGAGGGTTGTCTGAGGTATATA 206
|| | ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 60 TCTCTTTTGTGG-TTGTATAATGGCGTCTGGTACAGTGGGAGGGTTGTCTGAGGTATATA 118
Query 207 GTAGTGCAAAAAGGATTCTACTAAGAGCTCGGAATGGAATCGAGAAGTTGGAGAGGTTCG 266
||||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||||
Sbjct 119 GTAGTGCAAAAAGGATTCTACTAAGGGCTCGGGACGGAATCGAGAGGTTGGAGAGGTTCG 178
Query 267 ACTCTGATCCTACCGACCTCGCCTCCTCCGTGAAACGAGACATTACCGAGGTTCAATCTC 326
|||||||||||||||| ||| |||| |||||||||||||| ||||| |||||||||||||
Sbjct 179 ACTCTGATCCTACCGATCTCTCCTCATCCGTGAAACGAGATATTACTGAGGTTCAATCTC 238
Query 327 TTTGTTCCAATATGGACGGTCTCTGGCGTTCGATCCCTGTCAAATCCCAGCGTGATCTTT 386
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 TTTGTTCCAATATGGACGGTCTCTGGCGTTCGATCCCTGTGAAATCCCAGCGTGATCTTT 298
Query 387 GGAGAAGGAAGAGTGAACAAGTAGGAGAAGAGGCTGAGTATTTGAACCAAAGTCTAGAGA 446
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 299 GGAGAAGAAAGAGTGAACAAGTAGGAGAAGAGGCCGAGTATTTGAACCAAAGTCTGGAGA 358
Query 447 AGTACATGTGGAGGAATCAGAGGAAGATGTTGGAAGCTAAAGAGAGAGCGGATTTGTTAG 506
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 AATACATGTGGAGGAATCAGAGGAAGATGTTGGAAGCGAAAGAGAGAGCGGATTTGTTAG 418
Query 507 GTAGAGGGAGTGGAGAAGGAGCTCACATTTTGCAAATATTTGATGAGGAGGCTCAAGGAA 566
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 419 GTAGAGGGAGCGGAGAAGGAGCTCATATTTTGCAAATATTTGATGAGGAAGCTCAAGGAA 478
Query 567 TGAACTCTGTTAAGAATTCAAAGAGAATGCTTGAAGATTCGTTTCAAAGTGGAGTTGCTA 626
|||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 TGAACTCTGTCAAGAATTCGAAGAGAATGCTCGAAGATTCGTTTCAAAGTGGAGTTGCTA 538
Query 627 TTCTCTCTAAATATGCTGAACAAAGGGATCGTTTGAAGAGTGCGCAGAGGAAGGCTTTGG 686
| ||||| |||||||| ||||||| ||||||||||||||| || ||| ||||||||||||
Sbjct 539 TCCTCTCCAAATATGCCGAACAAAAGGATCGTTTGAAGAGGGCACAGCGGAAGGCTTTGG 598
Query 687 ATGTTCTGAACACTGTTGGGCTCTCTAACTCTGTATTGAGGCTCATTGAGAGGCGTAATC 746
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 599 ATGTTCTGAACACTGTTGGGCTCTCCAACTCTGTATTGAGGCTCATTGAGAGGCGCAATC 658
Query 747 GTGTTGATACCTGGATTAAATATGCGGGTATGATCGCAACGCTTGTCATATTGTATCTCT 806
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 659 GTGTTGATACATGGATTAAATACGCCGGTATGATCGCAACGCTTGTCATATTGTATCTCT 718
Query 807 TCATAAGATGGACACGCTAGAACCAGAGAACTTTAATTACATTACCATAGATTGTATGGA 866
||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| |
Sbjct 719 TCATAAGATGGACACGCTAAAACCAGAGAACTTTAATTACATCAC-ATAGATTGTATGTA 777
Query 867 GAGAGTTTTGTAACACGttttttt-GTTTTGTTTATACCTCTTACAAGACATTTTCAAAA 925
||||||| |||||||| ||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 778 GAGAGTTATGTAACACATTTTTTTTGTTTTGTTTATGCCTCTCACAAGACATTTTCAAAA 837
Query 926 CACTAGTA-CACATATTCTC 944
|||||||| | |||||||||
Sbjct 838 CACTAGTATC-CATATTCTC 856
> Ahg482673 jgi|Araly1|482673|fgenesh2_kg.4__1733__AT2G36900.1
Length=828
Score = 708 bits (383), Expect = 0.0
Identities = 564/650 (87%), Gaps = 18/650 (3%)
Strand=Plus/Plus
Query 200 GTATATAGTAGTGCAAAAAGGATTCTACT-AAGAGCTCG-GAATGGAATCGAGAAGTTGG 257
|||||||||||||| |||||||||||||| ||| ||||| | | |||||||||| ||| |
Sbjct 182 GTATATAGTAGTGCGAAAAGGATTCTACTCAAG-GCTCGCG-ACGGAATCGAGAGGTTAG 239
Query 258 AGAGGTTCG----A-C-TC--T-GATCCTACCGACCTCGCCTCCTCCGTGAAACGAGACA 308
||||||||| | | || | ||| || |||| || ||||||||||||||||||||||
Sbjct 240 AGAGGTTCGAATCATCTTCTATGGATTCTCCCGATCTAGCCTCCTCCGTGAAACGAGACA 299
Query 309 TTACCGAGGTTCAATCTCTTTGTTCCAATATGGACGGTCTCTGGCGTTCGATCCCTGTCA 368
|||| ||||| | | |||| || || || ||||| ||| ||||| || || ||||| |
Sbjct 300 TTACTGAGGTCCGAGCTCTCTGCTCAAACATGGATTCTCTTTGGCGCTCAATTCCTGTTA 359
Query 369 AATCCCAGCGTGATCTTTGGAGAAGGAAGAGTGAACAAGTAGGAGAAGAGGCTGAGTATT 428
|||||||||||||||| |||||||| |||| ||||||||| |||||||| ||||||||||
Sbjct 360 AATCCCAGCGTGATCTCTGGAGAAGAAAGACTGAACAAGTTGGAGAAGAAGCTGAGTATT 419
Query 429 TGAACCAAAGTCTAGAGAAGTACATGTGGAGGAATCAGAGGAAGATGTTGGAAGCTAAAG 488
|||| |||||||| || || ||||||| ||||||||||| |||||||||||||||||||
Sbjct 420 TGAATCAAAGTCTGGAAAAATACATGTCGAGGAATCAGAAAAAGATGTTGGAAGCTAAAG 479
Query 489 AGAGAGCGGATTTGTTAGGTAGAGGGAGTGGAGAAGGAGCTCACATTTTGCAAATATTTG 548
|||||||||||||| |||| |||| ||| |||||||| |||||||||||||| |||||||
Sbjct 480 AGAGAGCGGATTTGCTAGGAAGAGCGAGCGGAGAAGGGGCTCACATTTTGCAGATATTTG 539
Query 549 ATGAGGAGGCTCAAGGAATGAACTCTGTTAAGAATTCAAAGAGAATGCTTGAAGATTCGT 608
||||||| ||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 540 ATGAGGAAGCTCAAGCTATGAACTCTGTGAAGAACTCAAAAAGAATGCTTGAAGAGTCGT 599
Query 609 TT-CAAAGTGGAGTTGCTATTCTCTCTAAATATGCTGAACAAAGGGATCGTTTGAAGAGT 667
|| ||| ||||||||||||| ||||| |||||||||||||||| |||||||||||||| |
Sbjct 600 TTTCAA-GTGGAGTTGCTATCCTCTCCAAATATGCTGAACAAAAGGATCGTTTGAAGAAT 658
Query 668 GCGCAGAGGAAGGCTTTGGATGTTCTGAACACTGTTGGGCTCTCTAACTCTGTATTGAGG 727
|| ||| | || |||||||||||||||||||| || |||||||| ||||| ||| |||||
Sbjct 659 GCACAGCGTAAAGCTTTGGATGTTCTGAACACAGTAGGGCTCTCCAACTCGGTACTGAGG 718
Query 728 CTCATTGAGAGGCGTAATCGTGTTGATACCTGGATTAAATATGCGGGTATGATCGCAACG 787
|||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 719 CTCATTGAGAGGCGCAATCGTGTTGATACTTGGATCAAATATGCCGGTATGATCGCAACA 778
Query 788 CTTGTCATATTGTATCTCTTCATAAGATGGACACGCTAGAACCAGA-GAA 836
||||||||||||||||| |||||||||||||||||||| ||| ||| |||
Sbjct 779 CTTGTCATATTGTATCTGTTCATAAGATGGACACGCTA-AAC-AGAAGAA 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35073083640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5