BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50460.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495113 jgi|Araly1|495113|fgenesh2_kg.8__929__AT5G50460.1 712 0.0
Ahg492346 jgi|Araly1|492346|fgenesh2_kg.7__1779__AT4G24920.1 270 6e-72
> Ahg495113 jgi|Araly1|495113|fgenesh2_kg.8__929__AT5G50460.1
Length=461
Score = 712 bits (385), Expect = 0.0
Identities = 439/464 (95%), Gaps = 8/464 (2%)
Strand=Plus/Plus
Query 16 CAATTTTCAGATCATTTGAATCGAAGCTAAAGAATCGCCGCCATGGACGCCATTGATTCC 75
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 CAATTTTCAGATCATTCAAATCGAAGCTAAAG-ATCGCCGCCATGGACGCCATTGATTCC 59
Query 76 GTCGTTGATCCTCTCAGAGACTTCGCTAAGGATAGTATTCGTCTCGTCAAGCGTTGCCAC 135
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 60 GTCGTTGACCCTCTCAGAGACTTCGCTAAGGATAGTATTCGCCTCGTTAAGCGTTGCCAC 119
Query 136 AAGCCAGATCGCAAAGAATTCACGAAAGTTGCAGTTCGTACCGCGATTGGGTTTGTGGTA 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAGCCAGATCGCAAAGAATTCACGAAAGTTGCAGTTCGTACCGCGATTGGGTTTGTGGTA 179
Query 196 ATGGGATTCGTTGGCTTCTTTGTGAAGCTAATCTTCATTCCGATCAACAACATCATCGTC 255
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 ATGGGATTCGTTGGGTTCTTTGTGAAGCTAATCTTTATTCCGATCAACAACATCATCGTC 239
Query 256 GGTGCCACTTAGAAAGCAAAGGATACACAAGTCAGTTCTATGTTTTGAGAAAGGAAGATT 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 GGTGCCACTTAGAAAGCAAAGGATACACAAGTCAGTTCTATGTTTTGAGAAAGGAAGTTT 299
Query 316 TAGAGGT-TATCGTGTTTT-AAGTGAAAGGCACAAGTCAGTTCTGTGTTTTGTGTAATCG 373
|||||| | || ||||| ||| ||| ||||||||||||||||||||||| ||| ||||
Sbjct 300 TAGAGGCCT-TCTTGTTTCCAAGAGAA-GGCACAAGTCAGTTCTGTGTTTTATGTTATCG 357
Query 374 GATCCCATTTGTTTCAATGttttttt--GGTTCTTCTTTTTTGTTCACAACTGAAAAATC 431
||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 358 GATTCCATTTGTTTCAATGTTTTTTTTTGGTTCTTCTTTTTTGTTCACAGCTGAAAAATC 417
Query 432 G-ACGTGTTTTGAATGTAGAGCAAACTAATTTAAAAAGCTGTGG 474
| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 418 GGACGTGTTTTGAATGTAGAGCAAACTAATTTAGAAAGCTGTGG 461
> Ahg492346 jgi|Araly1|492346|fgenesh2_kg.7__1779__AT4G24920.1
Length=464
Score = 270 bits (146), Expect = 6e-72
Identities = 190/212 (90%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 57 CATGGACGCCATTGATTCCGTCGTTGATCCTCTCAGAGACTTCGCTAAGGATAGTATTCG 116
|||||||||||||||||||||||| ||||| || |||||||| || ||||| || |||||
Sbjct 22 CATGGACGCCATTGATTCCGTCGTGGATCCGCTTAGAGACTTTGCCAAGGACAGCATTCG 81
Query 117 TCTCGTCAAGCGTTGCCACAAGCCAGATCGCAAAGAATTCACGAAAGTTGCAGTTCGTAC 176
||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 82 CCTCGTTAAGCGTTGTCACAAGCCAGATCGCAAAGAATTCACGAAAGTGGCAGTGCGTAC 141
Query 177 CGCGATTGGGTTTGTGGTAATGGGATTCGTTGGCTTCTTTGTGAAGCTAATCTTCATTCC 236
|| || ||||| || |||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 142 AGCAATCGGGTTCGTAGTAATGGGATTCGTGGGCTTCTTTGTGAAGCTCATCTTTATTCC 201
Query 237 GATCAACAACATCATCGTCGGTGCCACTTAGA 268
||||||||||||||||||||||| |||||||
Sbjct 202 CATCAACAACATCATCGTCGGTGCTACTTAGA 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18162060364
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5