BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50470.1
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949594 jgi|Araly1|949594|scaffold_801481.1 577 4e-164
> Ahg949594 jgi|Araly1|949594|scaffold_801481.1
Length=677
Score = 577 bits (312), Expect = 4e-164
Identities = 548/656 (84%), Gaps = 40/656 (6%)
Strand=Plus/Plus
Query 1 ATGGAAGAGAACAACGGCAACAACAACCACTACCT-GCCGCAACCATCGTCTTCCCAACT 59
|||||||| ||||||||||||||| ||||| | | |||||||| ||||||||| ||||
Sbjct 21 ATGGAAGAAAACAACGGCAACAACCACCACCA-GTGGCCGCAACAATCGTCTTCGCAACA 79
Query 60 GCCGCCGCCACCATTGTATTATCAATCAATGCCGTTGCCGTCATATTCACTGCCGCTGCC 119
|| ||||||||||| |||| ||| || |||||| ||||| ||||||||||||| |||
Sbjct 80 GCTGCCGCCACCATCCTATTCGCAACCACTGCCGTCGCCGTTGTATTCACTGCCGCCGCC 139
Query 120 GTACTCAC--C-G---CAGATGCGGAATTATTGGATTGCGCAGATGGGAAACGCAACTGA 173
|||||||| | | |||| | |||||||||||||| || || ||||||||| ||||
Sbjct 140 GTACTCACTGCAGACACAGACACAGAATTATTGGATTGAGCGGACGGGAAACGCCTCTGA 199
Query 174 TGTTAAGCATCATGCGTTTCCACTAACCAGGAT-AAAGAAAATCATGAAGTCCAACCCGG 232
|||||| ||| ||| |||||||||| | ||||| ||| || || ||||||||| || | |
Sbjct 200 TGTTAAACATAATGAGTTTCCACTAGCGAGGATCAAA-AAGATTATGAAGTCCGACGC-G 257
Query 233 AA-GTG-AACATGGTCACTGCAGAGGCTCCGGTCCTTATATCGAAGGCCTGTGAGATGCT 290
|| ||| || | ||||||||| || ||||| |||| |||||||||||||||||||||||
Sbjct 258 AACGTGCAA-AAGGTCACTGCGGAAGCTCCCATCCTAATATCGAAGGCCTGTGAGATGCT 316
Query 291 CATTCTTGATCTCACAATGCGATCGTGGCTTCATACCGTGGAGGGCGGTCGCCAAACTCT 350
|||||||||||||||||||| ||| ||||||||||||||||||||| | |||
Sbjct 317 CATTCTTGATCTCACAATGCAATCTTGGCTTCATACCGTGGAGGGCAGACGC-------- 368
Query 351 CAAGAGATCCGATACGCTCACGAGATCCGATATCTCCGCCGCAACGACTCGT-AGTTTCA 409
|| | | |||||| |||||||||||||||||||||| ||||||| | ||| |
Sbjct 369 ---GA-A----A--CGCTCAAGAGATCCGATATCTCCGCCGCAGTGACTCGTGA-TTTGA 417
Query 410 AATTTACCTTCCTTGGCGACGTTGTCCCAAGAGACCCTTCCGTCGTTACCGATGATCCCG 469
||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||||
Sbjct 418 AATTTACCTTCCTTGGCGACGTTGTCCCAAGAGACCCGTCCGTCGTTACTGCTTATCCCG 477
Query 470 TGCT-A--C---ATCCGGACGGTGAAGTACTTCCTCCGGGAACGGTGATAGGATATCCGG 523
||| | | |||| || |||||||||||||| ||||||| |||||||||| ||||||
Sbjct 478 TGCCCAAGCCGCATCCTGAGGGTGAAGTACTTCCGCCGGGAATGGTGATAGGACATCCGG 537
Query 524 TGTTTGATTGTAATGGTGTGTACGCGTCACCGCCACAGATGCAGGAGTGGCCGGCGGTGC 583
|||||| ||||||| || ||||||| ||||||| |||||||||||||||||||||||||
Sbjct 538 TGTTTGGTTGTAATTGTACGTACGCGCCACCGCCGCAGATGCAGGAGTGGCCGGCGGTGC 597
Query 584 CTGGTGACGGAGAGGAGGCAGCTGGGGAAATTGGAGGAAGCAGCGGCGGTAATTGA 639
||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 598 CTGATGACGGAGAGGAGGCAGCTGAGGAAATTGGAGGAAGCAGCGGCGGGAATTGA 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23407471038
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5