BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50480.1
Length=914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495114 jgi|Araly1|495114|fgenesh2_kg.8__930__AT5G50480.1 970 0.0
> Ahg495114 jgi|Araly1|495114|fgenesh2_kg.8__930__AT5G50480.1
Length=730
Score = 970 bits (525), Expect = 0.0
Identities = 642/698 (92%), Gaps = 9/698 (1%)
Strand=Plus/Plus
Query 2 TCCAAATCCCTAGAAATTGT---AAATGGCTGAGaacaacaacaacaacggcgacaacat 58
||||||||||||||| |||| |||| | |||||||||||||||||||||||||||||
Sbjct 1 TCCAAATCCCTAGAAGTTGTGAAAAAT-G--GAGAACAACAACAACAACGGCGACAACAT 57
Query 59 gaacaacgacaacCACCAGCAACCACCGTCGTACTCGCAGCTGCCGCCGATGGCATCATC 118
|||| ||| ||||||||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct 58 GAACGACGGCAACCACCAGCCACCACCGTCGTACTCACAGCTACCGCCGATGGCATCATC 117
Query 119 CAACCCTCAGTTACGTAATTACTGGATTGAGCAGATGGAAACCGTCTCGGATTTCAAAAA 178
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 118 CAACCCTCAGTTACGTAATTACTGGATCGAGCAAATGGAAACCGTCTCTGATTTCAAAAA 177
Query 179 CCGTCAGCTTCCATTGGCTCGAATTAAGAAGATCATGAAGGCTGATCCAGATGTGCACAT 238
|||||||||||||||| ||||||| || ||||| |||||||||||||| ||||| |||||
Sbjct 178 CCGTCAGCTTCCATTGACTCGAATAAAAAAGATAATGAAGGCTGATCCTGATGTCCACAT 237
Query 239 GGTCTCCGCAGAGGCTCCGATCATCTTCGCAAAGGCTTGCGAAATGTTCATCGTTGATCT 298
||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 238 GGTCTCCGCGGAGGCTCCGATCCTCTTCGCAAAGGCATGCGAAATGTTCATCGTTGATCT 297
Query 299 CACGATGCGGTCGTGGCTCAAAGCCGAGGAGAACAAACGCCACACGCTTCAGAAATCGGA 358
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 298 AACCATGCGGTCATGGCTCAATGCCGAGGAGAACAAACGCCACACGCTTCAGAAATCGGA 357
Query 359 TATCTCCAACGCAGTGGCTAGCTCTTTCACCTACGATTTCCTTCTTGATGTTGTCCCTAA 418
|||||| || |||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 358 TATCTCTAATGCAGTGGCTAGCTCTTTCACTTATGATTTCCTTCTTGATGTTGTCCCCAA 417
Query 419 GGACGAGT-CTATCGCCACCGCTGATCCTGGCTTTGTGGCTATGCCACATCCTGACGGTG 477
|||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GGACGA-TGGAATCGCCACGGCTGATCCTGGCTTTGTGGCTATGCCACATCCTGACGGTG 476
Query 478 GAGGAGTACCGCAATATTATTATCCACCGGGAGTGGTGATGGGAACTCCTATGGTTGGTA 537
|||||||||| |||||||||||||||||||||||||||||||| ||||| | | |||||
Sbjct 477 GAGGAGTACCTCAATATTATTATCCACCGGGAGTGGTGATGGGGACTCCGGTTGCTGGTA 536
Query 538 GTGGAATGTACGCGCCATCGCAGGCGTGGCCAGCAGCGGCTGGTGACGGGGAGGATGATG 597
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct 537 GTGGAATGTACGCGCCACCGCAGGCGTGGCCGGCAGCGGCTGGTGACGGGGAGGATGAGG 596
Query 598 CTGAGGATAATGGAGGAAACGGCGGCGGAAATTGAAGTGTAGATTTAGGGTTTGTAACCG 657
|| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 597 GTGCGGATAATGAAGGAAACGGCGGCGGAAATTGAAGTGTTGATTTAGGGTTTGTAACCG 656
Query 658 CCTATGTGGGAAATTTGAAATTTGGTGGTGTTTATTAG 695
| ||||||||| |||||||||| |||| |||||||||
Sbjct 657 ACAATGTGGGAA-TTTGAAATTTCGTGGAGTTTATTAG 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33891273213
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5