BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50520.1
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495116 jgi|Araly1|495116|fgenesh2_kg.8__932__AT5G50630.1 2619 0.0
> Ahg495116 jgi|Araly1|495116|fgenesh2_kg.8__932__AT5G50630.1
Length=1678
Score = 2619 bits (1418), Expect = 0.0
Identities = 1598/1685 (95%), Gaps = 11/1685 (1%)
Strand=Plus/Plus
Query 32 ATGACTTTGTGGCGTCACAAACTAGAGCTCCTAGTCAACGACCGATGGCTAGTTTTCGTC 91
||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGACCTGGTGGCGTCACAAACTAGAGCTCCTAGTCAACGACCGATGGCTAGTCTTCGTC 60
Query 92 TGCGCCATGTGGGTCCAATCCGTCGCCGGCGTTGGCTATCTATTCGGCGGCTCTATGTCT 151
|||||||||||| ||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 61 TGCGCCATGTGGATCCAATCCGTCGCCGGCGTCGGTTACCTATTCGGCGGCTCTATGTCT 120
Query 152 CCGGCAATCAAGACTTCCCTTGGCTACAATCAGAAACAGATCGCTCTTCTCGGCGTAGCT 211
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 121 CCGGCAATCAAGACTTCCCTTGGCTACAATCAGAAACAAATCGCTCTTCTCGGTGTTGCT 180
Query 212 AAAAACCTCGGTGACGCCATCGGATTCGTCTCCGGTGCTTTATCTGAAGTCTCACCTTCC 271
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AAAAACCTCGGTGACGCTATCGGATTCGTCTCCGGTGCTTTATCTGAGGTCTCACCTTCC 240
Query 272 TGGGTGGTTCTACTCGTCGGTGCAACTCAGAACCTT-TTCGGCTACGGTGTTGTTTGGCT 330
||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 241 TGGGTTGTTCTACTCGTCGGTGCAACTCAGAACCTTGTT-GGCTACGGTGTTGTTTGGCT 299
Query 331 CGTCGTCACTGGCCAATTGCCTAATTTGCCTCTCTGGATGTTGTTTGTTGCTATATTCGT 390
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGTCGTCACTGGTCAATTGCCTAATTTGCCTCTCTGGATGTTGTTTGTTGCTATATTCGT 359
Query 391 GGGAACAAATGGGGAAACATACTACAATACAGCGTCGCTTGTGTCATGCATTCATAACTT 450
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 GGGAACAAATGGTGAAACTTACTACAATACAGCATCGCTTGTGTCATGCATTCATAACTT 419
Query 451 CCCAGAAAGCCGAGGTCCTGTGGTGGGAATCCTGAAAGGGTTTTCTGGCTTGAGTGGAGC 510
||| ||||| || |||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 420 CCCTGAAAGTCGTGGTCCTGTGGTGGGAATCTTGAAAGGGTTTTCTGGTTTGAGTGGAGC 479
Query 511 AATCTTGACTCAGGTTTATTTGATGTTCAACCCTTCTCATGATTCTTCGGTTATTCTCAT 570
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 AATCTTGACTCAGGTTTATTTGATGTTCAATCCTTCTCATGATTCTTCGGTTATTCTCAT 539
Query 571 GGTTGCTCTTGGACCACCAGTCGTGGTTCTTGCTCTACTATTTATTGTTAGACCCGTGGA 630
||||||||||||||||||||| |||||| ||||| ||||||| |||||||||| |||||
Sbjct 540 GGTTGCTCTTGGACCACCAGTAGTGGTTGTTGCTTTACTATTCGTTGTTAGACCAGTGGA 599
Query 631 AAGAAGTTGCAGAACGAACTTGCGATCTGATGATTTAAGATTCCTGGCTATTTACGGTTT 690
||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||
Sbjct 600 AAGAAGTTGCAGAACGAACTTTCGATCTGATGATTTACGATTCTTGGCTATTTACGGTTT 659
Query 691 CTGTGTTGTCCTTGCGGTATATTTACTAGGATTGTTGGTACTTCAGAGTGTTTTTGATAT 750
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 CTGTGTTGTCCTTGCAGTATATTTACTAGGATTGTTGGTACTTCAGAGTCTTTTTGATAT 719
Query 751 GACTCAAACGATTATCACAACCTCTGGAGCCATCCTTGTCATTTTCATGGTTGTTCCAGT 810
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 720 AACTCAAACAATTATCACAACCTCTGGAGCCATCCTTGTTGTTTTCATGGTTGTTCCAGT 779
Query 811 TCTTGTCCCTTTTTCATCGGTTTTCATCTCGGGTAATAATGTCACCTCAGTGAAG-CCTG 869
|||||| || ||||||||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 780 TCTTGTTCCGTTTTCATCGGTTTTCATCTCGGGTAATAATGTCACCTTAGTGAAGTCC-G 838
Query 870 AAGAAGGAACTTC-CAATGTGGATCAGCATGAGGCTAGAACTTTAATTGAGAGAAGTGAC 928
||||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 839 AAGAAGGAACTTCTC-ATGTGGATCAGCATGAGGTTAAAACTTTAATTGAGAGAAGTGAC 897
Query 929 AGACCGCCGGAAAAGAA-AAGAGCGCCGTGTATAGGAGAAGATTTCACCTTGTTACAAGC 987
| | ||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 ATATTGCCGGAAAA-AAGAAGAGCGCCGTGTATAGGAGAAGATTTCACCTTGTTACAAGC 956
Query 988 TTTGGGACAAGCTGACTTCTGGCTTATATTTATGTCTCTGGTTCTAGGTGTAGGTTCGGG 1047
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 957 TTTGGGACAAGCCGACTTTTGGCTTATATTTATATCTCTGGTTCTAGGTGTAGGTTCGGG 1016
Query 1048 AATCACGATTATAGACAATCTTGGTCAGATTTGTTATTCCCTCGGGTACAGCAACACCAA 1107
||| ||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1017 AATAACGGTTATAGATAATCTTGGTCAGATTTGTTATTCCCTCGGGTACAACAACACCAA 1076
Query 1108 AATATTTGTCTCACTGATCAGCATCTCCAATTTTCTCGGCCGTGTTGCTGGTGGCTACTT 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AATATTTGTCTCACTGATCAGCATCTCCAATTTTCTCGGCCGTGTTGCTGGTGGCTACTT 1136
Query 1168 CTCTGAGCTAATCATAAGGAAACTCTCACTTCCAAGAACGTTGGCAATGTCTGTGGTTCA 1227
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1137 CTCAGAGCTAATCATAAGAAAACTCTCACTTCCAAGAACATTGGCAATGTCTGTGGTTCA 1196
Query 1228 GGCGATAATGTCTTTGGGGCTCATCTACTATGCCATAGATTGGCCAGGGAAGATCTACGT 1287
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1197 GGCGATAATGTCTTTAGGGCTCATCTACTATGCCATAGACTGGCCAGGGAAGATCTACGT 1256
Query 1288 AGTGACCATTGTGATAGGAATGGGTTATGGCGCTCATTGGGCGATTGCTCCTGCTTCAGT 1347
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1257 AGTGACCATTGTAATAGGAATGGGTTATGGCGCTCACTGGGCGATCGCTCCTGCTTCAGT 1316
Query 1348 CTCTGACATTTTTGGCCTGAAGAGCTTCGGTTCTCTTTACAATTTCCAGATTACAGCTTT 1407
|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 1317 GTCTGACATTTTTGGCCTGAAGAGCTTTGGTTCTCTCTACAATTTCCAGATCACAGCTTT 1376
Query 1408 GCCTATTGGGTCATTTGTGTTCTCAGGTGTGATCGCTAGTAACATCTATGACTACTACGC 1467
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1377 GCCTATTGGGTCATTTGTGTTCTCAGGTGTGATTGCTAGTAACATCTATGACTACTACGC 1436
Query 1468 CAGAAAGCAAGCCGGACCCACCACAGAGACTGAGTCGCTCGTCTGCACGGGCTCGGTGTG 1527
||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1437 CAGAAAGCAAGCCGGACCCTCCACAGAAACTGAGTCGCTTGTCTGCACGGGCTCGGTGTG 1496
Query 1528 TTATTCAGTCACGTGCAGTCTCATGTCCATGTTGTGTCTAATGGCTATGGTTTTGAGTTT 1587
|||||||||||||||| |||| |||||||||||||||||| ||||||||||||| |||||
Sbjct 1497 TTATTCAGTCACGTGCGGTCTTATGTCCATGTTGTGTCTACTGGCTATGGTTTTTAGTTT 1556
Query 1588 GAGTGTGGTTTATAGGACGAGGAAGTTTTACTTGAGGCTTCATCACCGAGTCTCAAAGAC 1647
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1557 GAGTGTGGTTTATAGGACGAGGAAGTTTTACTTGAGGCTT-A--ACCGAGTCTCAAAGAC 1613
Query 1648 TTGAAGATAGTGTAATTGTGTAAGCAATTTTCATTTGGTCTTTGGAAGATATATGTAAGC 1707
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1614 TTGAAGATAGTGTAACTGTGTAAGCAATTTTCATTTTGTCTTTGGAAGATACATGTAAGC 1673
Query 1708 AATTT 1712
|||||
Sbjct 1674 AATTT 1678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66353206790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5