BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50580.2
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495124 jgi|Araly1|495124|fgenesh2_kg.8__940__AT5G50580.2 1796 0.0
> Ahg495124 jgi|Araly1|495124|fgenesh2_kg.8__940__AT5G50580.2
Length=1173
Score = 1796 bits (972), Expect = 0.0
Identities = 1088/1144 (95%), Gaps = 8/1144 (1%)
Strand=Plus/Plus
Query 133 CTAGGGTTTCACTACGAGAATGGACGGAGATGAGCTCACCGAGCAGGAAACTGCTCTTTA 192
|||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 34 CTAGGGTTTCACTAAGAGAATGGACGGAGAAGAGCTCACCGAGCAAGAAACTGCTCTATA 93
Query 193 TGACCGTCAAATTAGGGTATGGGGAGCTGGTGCTCAAAGAAGATTGAGTAAATCTCATGT 252
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 94 CGACCGCCAAATTAGGGTTTGGGGCGCTGGTGCTCAAAGAAGATTGAGTAAATCTCATGT 153
Query 253 TTTGGTATCTGGAATTAAGGGCACTGTTGCTGAGTTTTGTAAGAACATTGTGTTGGCAGG 312
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 154 TTTGGTATCTGGAATTAAGGGGACTGTTGCTGAGTTTTGCAAGAACATTGTGTTGGCTGG 213
Query 313 AGTAGGTAGTGTGACTCTGTTGGATGATCGATTGGTTACAACGGAAGTC-TTCAACGCAA 371
||| |||||||||||||| ||||||||||| |||||||||||||||| | ||||||||||
Sbjct 214 AGTTGGTAGTGTGACTCTATTGGATGATCGGTTGGTTACAACGGAAG-CATTCAACGCAA 272
Query 372 ACTTCTTGATTCTTCCTGATGAAAATGCTTATGTAGGCAAAACCGTAGCTGAGATTTGTT 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 ACTTCTTGATTCTTCCTGATGAAAATGCTTATGTAGGCAAAACCGTAGCTGAGATTTGTT 332
Query 432 GTGATTCACTTAAGGATTTTAACCCTATGGTTCATGTTTCAATAGAGAA-AGGTGATTTG 490
|||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||
Sbjct 333 GTGATTCACTTAAGGAATTTAACCCTATGGTCCATGTTTCAATAGA-AACAGGTGATTTG 391
Query 491 TCAACACTTGGTGTTGATTTTTTCGAGAAGTTTGATGTTGTGGTTATCGGCTACAGTTCT 550
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 TCAACATTTGGCGTTGATTTTTTCGAGAAGTTTGATGTTGTGGTTATCGGCTACAGTTCT 451
Query 551 CGTGCTACTAAGAAAGCAGTTAATGAAAAGTGTAGGAACCTAGCAAAA-GATGTAGCGTT 609
||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |||||
Sbjct 452 CGTGCTACTAAGAAAGCAGTTAATGAAAAATGTAGGAACCTAGCAAAACG-TGTGGCGTT 510
Query 610 CTATACAGTTGATTGTAGAGGCTCATGTGGCGAAATATTTGTCGACCTTCAGAATTATAA 669
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 511 CTATACAGTTGATTGTAGAGGCTCATGTGGCGAAATATTTGTCGACCTGCAGAATTATAA 570
Query 670 GTACACAAAGAAAAAGCTTGATGAAACAGTGGAATGTGAACTAACATTTCCAAGTTTTGA 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 GTACACAAAGAAAAAGCTTGATGAAACAGTGGAATGTGAACTAACATTTCCAAGTTTTGA 630
Query 730 GGAGGCAGTTTCAGTACCGTGGAAACCGATGCCAAGGAGAACAGCAAAGCTCTACTTTGC 789
|||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 631 GGAGGCAGTTTCAGCACCATGGAAACCGATTCCAAGGAGAACAGCAAAGCTCTACTTTGC 690
Query 790 AATGAGAGTGATAGAACTATTTGAGGAAACTGAAGGACGTAAACCTGGGGAATGTTCGCT 849
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 691 AATCAGAGTGATAGAACTATTTGAGGAAACTGAAGGGCGTAAACCTGGGGAATGTTCGCT 750
Query 850 GTCTGATCTCCCAAGAGTTTTGAAACTCAAAAAGGAACTATGTGAAGGAAATTCGGTCAG 909
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 751 GTCTGATCTCCCAAGAGTTTTGAAACTCAAAAAGGAACTCTGTGAGGGAAATTCGGTTAG 810
Query 910 CGAGAATCATATTCCAGATATCCTCTTGGAGAGACTCGTATCTAATAACACAGAATTCCC 969
|||||| ||||||||||||| |||| |||||||||| |||||| |||||||||||||||
Sbjct 811 CGAGAAACATATTCCAGATAGCCTCCTGGAGAGACTAGTATCTGGTAACACAGAATTCCC 870
Query 970 ACCGGCTTGTGCCATCATTGGAGGGATTCTAGGACAGGAGGTGATAAAAGTTATATCAGG 1029
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 871 ACCAGCTTGTGCCATCATTGGAGGGATTCTAGGACAGGAGGTGATAAAAGTTATATCGGG 930
Query 1030 CAAAGGAGAGCCGTTGAAGAACTTCTTCTACTTTGATGCAGAGGATGGGAAAGGTGTAAT 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 CAAAGGAGAGCCGTTGAAGAACTTCTTCTACTTTGATGCAGAGGATGGGAAAGGTGTAAT 990
Query 1090 CGAGGACCTATCCCACAAGCTTTAACTTCCAAACATGAAAGGTGCTGTGAAACGCTGCTC 1149
||| |||||||| |||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 991 CGAAGACCTATCTAACAAGCTTTAACTTCCAAACCTTAAAGGTGCTGTGAAATGCTGCTC 1050
Query 1150 TTAGTAATTAGTTCCTTGTTGAAGATTGTATTGGAAATTAGACTTTAGAGTACTTAGAAC 1209
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1051 TTAGTAATTAGTTCCTTGTTGAATATTGTATTGGAAATTAGACTTTAGAGTGCTTAGAAC 1110
Query 1210 TTGGCTCCTTGTCTTTTGTATCTACTAACTTGGTTC-GCTCCTAAAGACAATCTGTAACC 1268
|||||||||||||||||||||||||||||||||||| | ||| |||||||||||| || |
Sbjct 1111 TTGGCTCCTTGTCTTTTGTATCTACTAACTTGGTTCAG-TCCAAAAGACAATCTGAAATC 1169
Query 1269 CACT 1272
||||
Sbjct 1170 CACT 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49864775436
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5