BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G50660.1

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495120 jgi|Araly1|495120|fgenesh2_kg.8__936__AT5G50660.1          339    6e-93


> Ahg495120 jgi|Araly1|495120|fgenesh2_kg.8__936__AT5G50660.1
Length=204

 Score =  339 bits (183),  Expect = 6e-93
 Identities = 193/198 (97%), Gaps = 0/198 (0%)
 Strand=Plus/Plus

Query  7    GAGTGGCTTCCGGTGGTGGTCGCGACGGTGTTGTTTGTGGTGCTGAGCCCGGGATTGTTG  66
            |||||| || |||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  7    GAGTGGGTTGCGGTGGTGGTGGCGACGGTGTTGTTTGTGGTGCTGAGCCCTGGATTGTTG  66

Query  67   TTTCAGGTTCCGGGAAACAACAACTTTGTAGACTTCGGGAAGATGGAAACGAGCGGATAC  126
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  67   TTTCAGGTTCCGGGAAACAACAACTTTGTAGACTTCGGGAAGATGGAAACCAGCGGATAC  126

Query  127  TCAATCCTTCTCCACGCCTTCCTTTACTTTGGCCTTGTCACTGTCTTCACCGTCGTCATC  186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  127  TCAATCCTTCTCCACGCCTTCCTTTACTTTGGCCTTGTCACTGTCTTCACCGTCGTCATC  186

Query  187  CACTTTCCGGGCACTTAA  204
            ||||||||||||||||||
Sbjct  187  CACTTTCCGGGCACTTAA  204



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6912075241


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5