BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50670.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949608 jgi|Araly1|949608|scaffold_801495.1 1775 0.0
Ahg474435 jgi|Araly1|474435|fgenesh2_kg.1__4389__AT1G53160.2 75.0 1e-12
> Ahg949608 jgi|Araly1|949608|scaffold_801495.1
Length=1117
Score = 1775 bits (961), Expect = 0.0
Identities = 1069/1120 (95%), Gaps = 11/1120 (1%)
Strand=Plus/Plus
Query 207 aaaaaGCACAATCTTTGAATGGACTGGAATTTCAAACTTAGCTCTGGTTATTTATCTGGA 266
||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 4 AAAAA-CAAAATCTTTGAATGGACTGGAATTTCAAAGTTAGCTCTGGTTATTTATCTGGA 62
Query 267 TTCGATCAAGAACCAGATTTATCACCAATGGATGGTTCGATCTCGTTTGGTGGGTCGTCA 326
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 63 TTCGATCAAGAACCGGATTTATCACCAATGGATGGTTCGATCTCGTTTGGTGGGTCTTCA 122
Query 327 CAGTCAAAAGCGGATTTTTCATTTGATCTAAAACTTGGAAGAAACATTGGAAACTCTTCC 386
|||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 123 CAGTCAAAAGGGGAATTTTCATTTGATCTGAAACTTGGAAGAAACAATGGAAACTCTTCC 182
Query 387 TCTGTTTTTGGTGATACAGAGCAAGTGATTAGTCTTAGTAAGTGGAAAGATAGTGCTTTA 446
||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||
Sbjct 183 TCTGTTTTTGGTGATACAGAGCAAGTGATAAGTCTAAGTAAGTGGAAAGAGAGTTCTTTG 242
Query 447 GCTAAACCAGAAG-GTTCAAGAAGCTCGAGTTCAAAGAGAACAAGAGGGAATGGTGTTGG 505
|||||||||| || |||| ||||| |||||||||||||||||||||||||| |||| |||
Sbjct 243 GCTAAACCAG-AGAGTTCGAGAAGTTCGAGTTCAAAGAGAACAAGAGGGAACGGTGCTGG 301
Query 506 AACCAACCAGATGCCGATTTGTCTT-GTTGATGGATGTGATTCTGATTTTAGTAATTGTA 564
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 302 AACCAACCAGATGCCGATTTGT-TTAGTTGATGGATGTGATTCTGATTTTAGTAATTGTA 360
Query 565 GAGAGTATCATAAGAGACATAAAGTTTGTGATGTTCATTCAAAAACTCCTGTGGTTACTA 624
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGAGTATCATAAGAGACATAAGGTTTGTGATGTTCATTCAAAAACTCCTGTGGTTACTA 420
Query 625 TTAATGGTCATAAACAGAGGTTTTGTCAACAATGCAGCAGGTTTCATGCTTTGGAGGAGT 684
|||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 421 TTAATGGTCACAAGCAGAGGTTTTGTCAACAATGTAGCAGGTTTCATGCTTTGGAAGAGT 480
Query 685 TTGATGAAGGGAAGAGAAGTTGTAGGAAACGTCTTGATGGACATAATCGAAGACGACGGA 744
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 481 TTGATGAAGGGAAGAGAAGTTGTAGAAAACGTCTTGATGGACATAATCGAAGAAGACGGA 540
Query 745 AGCCGCAGCCTGAACATATCGGTCGTCCTGCCAACTTCTTTACGGGTTTTCAAGGTAGCA 804
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 AGCCGCAGCCTGAACATATCGGTCGTCCTGCGAACTTCTTTACGGGTTTTCAAGGTAGCA 600
Query 805 AATTGCTAGAGTTTTCTGGTGGTTCACATGTGTTTCCAACTACATCTGTGTTGAACCCGA 864
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATTGCTAGAGTTTTCGGGTGGTTCACATGTGTTTCCAACTACATCTGTGTTGAACCCGA 660
Query 865 GCTGGGGAAATAGTCTTGTAAGCGTTGCTGTAGCCGCCAATGGTTCGAGTTATGGGCAGA 924
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 661 GCTGGGGAAATAGTCTTGTAAGCGTTGCTGTGGCCGCCAATGGTTCGAGTTACGGGCAGA 720
Query 925 GCCAGAGCTATGTTGTTGGTTCTTCTCCTGCAAAGACAGGGATAATGTTTCCAATCTCTT 984
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 721 ACCAGAGCTA---TGTTGGTTCTTCTCCTGCTAAGACAGGGATAATGTTTCCAATCTCTT 777
Query 985 CTTCTCCAAACAGTACCAGAAGCATAGCAAAACAATTCCCTTTCTTGCAAGAAGAAGAAA 1044
||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||
Sbjct 778 CTTCTCCAAACAGTAACAGACGCATAGGGAAACAATTCCCTTTCTTGCAAGAAGAAGAAA 837
Query 1045 GCTCGAGAACCGCATCGTTGTGTGAGAGAATGACGAGTTGCATCCATGACTCTGATTGTG 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCTCGAGAACCGCATCGTTGTGTGAGAGAATGACGAGTTGCATCCATGACTCTGATTGTG 897
Query 1105 CTCTCTCTCTTCTGTCATCCTCCTCGTCGTCAGTCCCTCATTTGCTTCAACCACCACTTT 1164
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 898 CTCTCTCTCTTCTGTCATCCTCCTCGTCGTCAGTCCCTCATTTGCTTCAGCCACCACTTT 957
Query 1165 CTTTGTCCCAAGAAGCAGTTGAGACAGTTTTTTACGGGTCGGGATTGTTTGAGAATGCGA 1224
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 958 CTTTGTCCCAAGAAGCAGTTGAGACAGTTTTTTACGGGTCGGCATTGTTTGAGAATGCGA 1017
Query 1225 GTGCAGTCTCTGATGGATCGGTTATATCCGGTAACGAGGCTGTCCGTCTTCCGCAGACAT 1284
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || |
Sbjct 1018 GTGCAGTCTCTGATGGATCGGTTATATCCGGTAATGAGGCTGTCCCTCTTCCGCAAACGT 1077
Query 1285 TCCCGTTTCATTGGGAGTAGTA---GAAGAAGAAGTAGGT 1321
|||||||||||||||||||||| |||||||||||||||
Sbjct 1078 TCCCGTTTCATTGGGAGTAGTATAAGAAGAAGAAGTAGGT 1117
> Ahg474435 jgi|Araly1|474435|fgenesh2_kg.1__4389__AT1G53160.2
Length=851
Score = 75.0 bits (40), Expect = 1e-12
Identities = 132/175 (75%), Gaps = 12/175 (7%)
Strand=Plus/Plus
Query 578 GAGACATAAAGTTTGTGATGTTCATTCAAA---AACTCCTGTGGTTACTATTAATGGTCA 634
|||||| ||||| ||||| |||||| |||| | || |||| || || | | || |
Sbjct 272 GAGACACAAAGTGTGTGAAGTTCATGCAAAGGCATCTTCTGT-CTTTCT-CTCA-GGACT 328
Query 635 TAAACAGA-GGTTTTGTCAACAATGCAGCAGGTTTCATGCTTTGGAGGAGTTTGATGAAG 693
||| || | | |||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 329 TAACCA-ACGCTTTTGTCAACAATGCAGCAGGTTTCATGAGATCCAAGAGTTTGATGAAG 387
Query 694 GGAAGAGAAGTTGTAGGAAACGTCTT-GATGGACATAATCGAA-GACGACGGAAG 746
|| ||||||||| | | || ||| | |||||| ||| ||| || || |||||
Sbjct 388 CAAAAAGAAGTTGTCGTAGGCG-CTTAGCTGGACACAAT-GAAAGAAGAAGGAAG 440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5