BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50690.1
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331461 jgi|Araly1|331461|fgenesh1_pm.C_scaffold_8000804 1315 0.0
> Ahg331461 jgi|Araly1|331461|fgenesh1_pm.C_scaffold_8000804
Length=885
Score = 1315 bits (712), Expect = 0.0
Identities = 841/901 (93%), Gaps = 17/901 (2%)
Strand=Plus/Plus
Query 1 ATGGATTTAAACAACAAGATCTTTAACATCCTTCTTCCTATTGTCACGGTTTCGTTTCTT 60
|||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTTAATCAACAAGATCCTCAACATCCTTCTTCCTATTGTCACGGTTTCGTTTCTT 60
Query 61 TTAGTGTTCATGCCATTTTCAATATTCTTCAAGCTCCTCCAGTTCATAAGGGGATGCAAA 120
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 61 TTAGTGTTCATGCCATTTTCAATATTCTTCAAGCTCCTCGGGTTCATAAGGAGATGCAAA 120
Query 121 GAGTCCGAGAAAGTCAACGGAAAAGTCGTCATCATCACCGGATCTTCCTCAGGAATTGGC 180
||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 121 GAGTCTGAGAAAGTCGACGGAAAAGTGGTCATCATCACCGGATCTTCCTCTGGAATTGGT 180
Query 181 GAGCACCTAGCGTATGAGTATGCTCGTAGAGGAGCATACTTGACTCTAGTAGCTCGGAGA 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGCACCTCGCGTATGAGTATGCTCGTAGAGGAGCATACTTGACTCTAGTAGCTCGGAGA 240
Query 241 GAGGATCGTCTCCAGGTGGTGGCTGACCGGTGCAGGAAGCTTGGTTCACCAGACGTTGCT 300
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 241 GAGGATCGTCTCCAGGTGGTTGCTGACAGGTGCAGGAAGCTTGGTTCACCAGA-----C- 294
Query 301 GTGGTACGCGGTGATGTCTCAGTCATCA-AAGACTGTAAACGTTTTGTTCAAGAAACCAT 359
|| || | | ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 295 GT--TA--C----A-GTCTCAGTCAT-AGAAGACTGTAAACGTTTTGTTCAAGAAACCAT 344
Query 360 CTCTCGGTTTGGAAGATTGGATCACTTGGTGAACAATGCTGGAATTGCGGAGGCCAAATT 419
||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||
Sbjct 345 CTCTCGGTTTGGAAGATTGGATCGCCTGGTGAACAATGCTGGAATTGCAGAGGCCAAATT 404
Query 420 TTTCGAGGACTATTCTGAAATTTCGGATGTTCTTCCCATTGTGAACACTAACTTTTGGGG 479
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 405 TTTCGATGACTATTCAGAAATTTCGGATGTTCTTCCCATTGTGAATACTAACTTTTGGGG 464
Query 480 ACCGGTTTACGCGACACATTTCGCTATACCGCATCTCAAGAAAACAAAAGGAAAGATCAT 539
|||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 465 ACCGGTTTACGCAACACATTTCGCTATACCACATATCAAGAAAACAAAAGGAAAGATCAT 524
Query 540 AGCGGTTGCATCACCTGCTGGATGGTCTGGAGTACCAAGGATGAGCATATATGCTGCAAG 599
|||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 525 AGCGGTTGCATCGCCCGCGGGATGGTCTGGAGTGCCAAGGATGAGCATATATGCTGCAAG 584
Query 600 CAAAGCAGCTATGATAAACTTCTACGAGACTCTTAGGATCGAGCTTCATCCAGAAGTTGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CAAAGCAGCTATGATAAACTTCTACGAGACTCTTAGGATCGAGCTTCATCCAGAAGTTGG 644
Query 660 TGTGACAATCGTGTTTCCTGGTCTAATCGAAAACGGAAATACTAATCCGGACCTTTTAGC 719
|||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 645 TGTGACAATCGTGTTTCCGGGTCTAATCGAAAACGGAAATACCAATTCGGACCTTTTGGC 704
Query 720 TGAGAAACAAGACTGGTCGCAAGTTGTGACCATCGAGTCAGCAGCGGAATGCGCCAAAGC 779
|||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct 705 TGAGAAACAAGAGTGGTCACAAGTTGTGGCCATCGAGTCAGCAGCGGTATGCGCCAAAGC 764
Query 780 GGTAGTTAACGGAATCTGCAGAGGCAAAACCTTTGTGGCAGAGCCGTCGTGGGTTCGTGT 839
||| ||||||||||| || || || ||||||||||||||||||||||| |||||||||||
Sbjct 765 GGTTGTTAACGGAATATGTAGGGGAAAAACCTTTGTGGCAGAGCCGTCTTGGGTTCGTGT 824
Query 840 CCTGTTCTGGCTTAGTGCTATATGCCCTGAGCTTCTGATCTCTAAGCCTAAAAGGAATTA 899
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 825 CCTGTTCTGGCTTAGTGCTATCTGCCCTGAGCTTCTGATCTCTAAGCCTAAAAGGAATTA 884
Query 900 A 900
|
Sbjct 885 A 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5