BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50700.1
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495130 jgi|Araly1|495130|fgenesh2_kg.8__946__AT5G50600.1 1760 0.0
> Ahg495130 jgi|Araly1|495130|fgenesh2_kg.8__946__AT5G50600.1
Length=1218
Score = 1760 bits (953), Expect = 0.0
Identities = 1070/1127 (95%), Gaps = 6/1127 (1%)
Strand=Plus/Plus
Query 4 ATGAGAGCTAAATCATTTACGTTTTGATCGACAAAAATGGAGTTGATAAACGACTTT-CT 62
|||||||| |||||||||| |||||||||||||| |||||| ||||||||||| ||| ||
Sbjct 1 ATGAGAGCCAAATCATTTATGTTTTGATCGACAACAATGGAATTGATAAACGA-TTTCCT 59
Query 63 CAACCTAACTGCTcctttcttcaccttctttggtctctgcttcttcttgcctccttttta 122
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 60 CAACCTAACTGCGCCTTTCTTCACCTTCTTTGGCCTCTGCTTTTTCTTGCCTCCTTTTTA 119
Query 123 cttcttcaagttcttGCAGTCTATTTTCTCGACAATTTTCTCT-GAAAATCTTTACGGGA 181
|||||||||||||||||||||||||||||||| ||||||| | ||||||||||| ||||
Sbjct 120 TTTCTTCAAGTTCTTGCAGTCTATTTTCTCGACCATTTTCT-TGGAAAATCTTTATGGGA 178
Query 182 AAGTTGTTCTCATCACTGGTGCTTCCTCCGGTATAGGCGAGCAATTGGCATATGAGTACG 241
|||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 179 AAGTGGTTCTCATCACTGGCGCGTCCTCCGGTATCGGCGAGCAATTGGCATATGAGTACG 238
Query 242 CATGTAGAGGTGCATGTTTAGCCCTGACCGCCCGAAGGAAGAACCGTCTAGAGGAAGTGG 301
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 239 CATGTAGAGGTGCATGCTTGGCCCTGACCGCTCGAAGGAAGAACCGTCTAGAGGAAGTGG 298
Query 302 CAGAGATTGCTCGTGAACTCGGATCTCCCAATGTTGTTACCGTTCATGCTGATGTCTCCA 361
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 CAGAGATTGCTCGTGAACTCGGATCTCCCAATGTTGTCACCGTTCATGCTGATGTCTCCA 358
Query 362 AACCTGATGACTGTAGACGAATCGTTGATGACACCATCACCCATTTTGGCAGATTGGATC 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AACCTGATGACTGTAGACGAATCGTTGATGACACCATCACCCATTTTGGCAGATTGGATC 418
Query 422 ATCTTGTAAATAATGCTGGGATGACGCAGATTTCAATGTTTGAGAACATTGAAGATATAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATCTTGTAAATAATGCTGGGATGACGCAGATTTCAATGTTTGAGAACATTGAAGATATAA 478
Query 482 CGAGGACAAAAGCAGTTTTGGATACTAACTTCTGGGGATCGGTTTATACCACTCGTGCTG 541
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 479 CAAGGACAAAAGCAGTTTTGGATACTAACTTCTGGGGATCGGTTTACACAACTCGTGCTG 538
Query 542 CGCTTCCATACCTTAGACAAAGTAATGGTAAGATTGTGGCTATGTCGTCTTCCGCAGCGT 601
||||||| |||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 539 CGCTTCCTTACCTTAGACAAAGCAATGGTAAGATTGTGGCTATGTCGTCCTCTGCAGCGT 598
Query 602 GGCTAACCGCTCCAAGGATGAGTTTTTACAATGCAAGCAAAGCAGCTTTGTTGAGCTTCT 661
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 599 GGCTAACCGCTCCAAGGATGAGCTTTTACAATGCAAGCAAAGCAGCTTTGTTGAGCTTCT 658
Query 662 TTGAGACGATGAGAATTGAGCTTGGTGGCGATGTACACATTACAATCGTCACACCTGGTT 721
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 TTGAGACGATGAGAATTGAGCTTGGTGGCGATGTACACATTACAATTGTCACACCTGGTT 718
Query 722 ATATCGAGTCGGAGCTCACACAAGGCAAGTACTTCTCTGGTGAAGGCGAGTTAATAGTCA 781
|||| || || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATATAGAATCCGAACTCACACAAGGCAAGTACTTCTCTGGTGAAGGCGAGTTAATAGTCA 778
Query 782 ACCAAGACATGAGAGATGTTCAAGTAGGACCATTTCCGGTAGCGTCAGCATCAGGATGTG 841
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 779 ACCAAGACATGAGAGATGTTCAAATAGGACCATTTCCGGTAGCATCAGCATCAGGATGTG 838
Query 842 CCAAGTCGATAGTGAACGGTGTGTGCCGGAAACAAAGATACGTGACAG-AGCCATCATGG 900
||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 839 CCAAGGCGATAGTGAACGGTGTGTGCCGGAAACAAAGATACGTGACAGTA-CCATCGTGG 897
Query 901 TTTAAGGTGACGTACCTTTGGAAAGTGCTATGTCCGGAGTTGATTGAGTGGGGTTGTCGG 960
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 898 TTTAAGGTGACATACCTTTGGAAAGTGCTATGTCCTGAGTTGATTGAGTGGGGTTGTCGG 957
Query 961 TTACTGTACATGACTGGAACTGGTATGTCCGAGGATACTGCACTCAACAAGAGGATCATG 1020
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 958 TTACTGTACATGACTGGAACTGGTATGTCCGAGGAAAGTGCACTCAACAAGAGGATCATG 1017
Query 1021 GACATTCCTGGTGTACGTAGTACTCTGTACCCGGAATCTATCAGAACTCCAGAAATCAAG 1080
||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||
Sbjct 1018 GACATTCCTGGTGTACGTAGTGCTCTATACCCGGAATCTATCCGAAGGCCAGAAATCAAG 1077
Query 1081 TCGGATTAGAGAGGGGTCAATACATAATAAATGGATGAGATGTATCA 1127
||||||||||||| || || |||||||||| |||||| |||||||
Sbjct 1078 TCGGATTAGAGAGATGTTGATGCATAATAAATAGATGAGGTGTATCA 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49521669183
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5