BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50700.1 Length=1324 Score E Sequences producing significant alignments: (Bits) Value Ahg495130 jgi|Araly1|495130|fgenesh2_kg.8__946__AT5G50600.1 1760 0.0 > Ahg495130 jgi|Araly1|495130|fgenesh2_kg.8__946__AT5G50600.1 Length=1218 Score = 1760 bits (953), Expect = 0.0 Identities = 1070/1127 (95%), Gaps = 6/1127 (1%) Strand=Plus/Plus Query 4 ATGAGAGCTAAATCATTTACGTTTTGATCGACAAAAATGGAGTTGATAAACGACTTT-CT 62 |||||||| |||||||||| |||||||||||||| |||||| ||||||||||| ||| || Sbjct 1 ATGAGAGCCAAATCATTTATGTTTTGATCGACAACAATGGAATTGATAAACGA-TTTCCT 59 Query 63 CAACCTAACTGCTcctttcttcaccttctttggtctctgcttcttcttgcctccttttta 122 |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 60 CAACCTAACTGCGCCTTTCTTCACCTTCTTTGGCCTCTGCTTTTTCTTGCCTCCTTTTTA 119 Query 123 cttcttcaagttcttGCAGTCTATTTTCTCGACAATTTTCTCT-GAAAATCTTTACGGGA 181 |||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||| Sbjct 120 TTTCTTCAAGTTCTTGCAGTCTATTTTCTCGACCATTTTCT-TGGAAAATCTTTATGGGA 178 Query 182 AAGTTGTTCTCATCACTGGTGCTTCCTCCGGTATAGGCGAGCAATTGGCATATGAGTACG 241 |||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||||| Sbjct 179 AAGTGGTTCTCATCACTGGCGCGTCCTCCGGTATCGGCGAGCAATTGGCATATGAGTACG 238 Query 242 CATGTAGAGGTGCATGTTTAGCCCTGACCGCCCGAAGGAAGAACCGTCTAGAGGAAGTGG 301 |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 239 CATGTAGAGGTGCATGCTTGGCCCTGACCGCTCGAAGGAAGAACCGTCTAGAGGAAGTGG 298 Query 302 CAGAGATTGCTCGTGAACTCGGATCTCCCAATGTTGTTACCGTTCATGCTGATGTCTCCA 361 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 299 CAGAGATTGCTCGTGAACTCGGATCTCCCAATGTTGTCACCGTTCATGCTGATGTCTCCA 358 Query 362 AACCTGATGACTGTAGACGAATCGTTGATGACACCATCACCCATTTTGGCAGATTGGATC 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 AACCTGATGACTGTAGACGAATCGTTGATGACACCATCACCCATTTTGGCAGATTGGATC 418 Query 422 ATCTTGTAAATAATGCTGGGATGACGCAGATTTCAATGTTTGAGAACATTGAAGATATAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 ATCTTGTAAATAATGCTGGGATGACGCAGATTTCAATGTTTGAGAACATTGAAGATATAA 478 Query 482 CGAGGACAAAAGCAGTTTTGGATACTAACTTCTGGGGATCGGTTTATACCACTCGTGCTG 541 | |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 479 CAAGGACAAAAGCAGTTTTGGATACTAACTTCTGGGGATCGGTTTACACAACTCGTGCTG 538 Query 542 CGCTTCCATACCTTAGACAAAGTAATGGTAAGATTGTGGCTATGTCGTCTTCCGCAGCGT 601 ||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||| Sbjct 539 CGCTTCCTTACCTTAGACAAAGCAATGGTAAGATTGTGGCTATGTCGTCCTCTGCAGCGT 598 Query 602 GGCTAACCGCTCCAAGGATGAGTTTTTACAATGCAAGCAAAGCAGCTTTGTTGAGCTTCT 661 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 599 GGCTAACCGCTCCAAGGATGAGCTTTTACAATGCAAGCAAAGCAGCTTTGTTGAGCTTCT 658 Query 662 TTGAGACGATGAGAATTGAGCTTGGTGGCGATGTACACATTACAATCGTCACACCTGGTT 721 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 659 TTGAGACGATGAGAATTGAGCTTGGTGGCGATGTACACATTACAATTGTCACACCTGGTT 718 Query 722 ATATCGAGTCGGAGCTCACACAAGGCAAGTACTTCTCTGGTGAAGGCGAGTTAATAGTCA 781 |||| || || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 ATATAGAATCCGAACTCACACAAGGCAAGTACTTCTCTGGTGAAGGCGAGTTAATAGTCA 778 Query 782 ACCAAGACATGAGAGATGTTCAAGTAGGACCATTTCCGGTAGCGTCAGCATCAGGATGTG 841 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 779 ACCAAGACATGAGAGATGTTCAAATAGGACCATTTCCGGTAGCATCAGCATCAGGATGTG 838 Query 842 CCAAGTCGATAGTGAACGGTGTGTGCCGGAAACAAAGATACGTGACAG-AGCCATCATGG 900 ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| ||| Sbjct 839 CCAAGGCGATAGTGAACGGTGTGTGCCGGAAACAAAGATACGTGACAGTA-CCATCGTGG 897 Query 901 TTTAAGGTGACGTACCTTTGGAAAGTGCTATGTCCGGAGTTGATTGAGTGGGGTTGTCGG 960 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 898 TTTAAGGTGACATACCTTTGGAAAGTGCTATGTCCTGAGTTGATTGAGTGGGGTTGTCGG 957 Query 961 TTACTGTACATGACTGGAACTGGTATGTCCGAGGATACTGCACTCAACAAGAGGATCATG 1020 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 958 TTACTGTACATGACTGGAACTGGTATGTCCGAGGAAAGTGCACTCAACAAGAGGATCATG 1017 Query 1021 GACATTCCTGGTGTACGTAGTACTCTGTACCCGGAATCTATCAGAACTCCAGAAATCAAG 1080 ||||||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||| Sbjct 1018 GACATTCCTGGTGTACGTAGTGCTCTATACCCGGAATCTATCCGAAGGCCAGAAATCAAG 1077 Query 1081 TCGGATTAGAGAGGGGTCAATACATAATAAATGGATGAGATGTATCA 1127 ||||||||||||| || || |||||||||| |||||| ||||||| Sbjct 1078 TCGGATTAGAGAGATGTTGATGCATAATAAATAGATGAGGTGTATCA 1124 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49521669183 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5