BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50710.1
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495133 jgi|Araly1|495133|fgenesh2_kg.8__949__AT5G50710.1 787 0.0
> Ahg495133 jgi|Araly1|495133|fgenesh2_kg.8__949__AT5G50710.1
Length=558
Score = 787 bits (426), Expect = 0.0
Identities = 517/561 (92%), Gaps = 6/561 (1%)
Strand=Plus/Plus
Query 1 ATGGATCCCGTAATCGCCATGCAAGAGGCCCAA-AGTAACAACGGACCAAGAACCTACAA 59
||||||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 1 ATGGATCCCGTAACCGCCATGCAAGAGACCCAATA-TAACAACGGACCAAGAACCTACAA 59
Query 60 GAAGCCATTTCTTAATTTTCTTGACCGCCTCTCCTTGTCATTTATCGTAGTTGTTTTCTG 119
||| ||| |||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 60 GAAACCAGTTCTTAATTTCCTCGACCGCCTTTCCTTGTCATTTATCGTAGTTGTTTTCTG 119
Query 120 CGTTATTGTAGTTTTTAGTCCAATTTGGCTTCAATTTTCTAATAGTTTTTTCTTATTCAC 179
|||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 120 CGTTATTGTAGTTTTTTGCCCGCTTTGGCTTCAATTTTCTAATAGTTTTTTCTTATTCAC 179
Query 180 CATCCCTAGAGTTATTAATTACATCTTAAACCCTAAGGTTTTATTCATTCTCACAAATGT 239
||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 180 CATCCCTAGAGTTGTTAATTACATCTTAAAACCTAAGGTTTTATTCGTTCTCACAAATGT 239
Query 240 TATCGTGATCATCCTCATCGGAGAATCAAGGATTTCTAGACCAAGATCTTCTCTTCCAGC 299
|||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 240 CATCGTGATCACCCTCATCGGAGAATCAAGGTTTTCTAGAGCAAGATCTTCTCTTCCAGA 299
Query 300 TAGCGCA-TTACTGAGAAGCCATTCTTATGGTTTGTGGTCTAATGAAAATGTGAGGGTGG 358
||||| | |||| ||||| | ||||| | |||||||||| ||||||||||||||||||
Sbjct 300 TAGCG-AGTTACCAAGAAGTCGTTCTTCTTCTTTGTGGTCTCATGAAAATGTGAGGGTGG 358
Query 359 AAATGGGATATCAACGATTTTTGGAAGAGAATATTGATCGACCGAGGCTCG-GAGAAGGC 417
|||| |||||||||||||||| ||||||||||||||||| ||||||||| | |||| |||
Sbjct 359 AAATAGGATATCAACGATTTTCGGAAGAGAATATTGATCAACCGAGGCT-GAGAGAGGGC 417
Query 418 AAGATATGTAAGCTTAGTCCGTTGGAGATGGATTCATTAAACCAGAGGGCTGATGATCTG 477
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAGAGATGTAAGCTTAGTCCGTTGGAGATGGATTCATTAAACCAGAGGGCTGATGATCTG 477
Query 478 ATCGCTCGTGTGAACAGACAGAGGAGGCTTGAAATTGGGCTGTTACATAGACGCATAGAC 537
|| ||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 478 ATAGCTCGTGTGAACAGACAGAGGAGGCTTGAAATTGGGCTGGTACATAGCCACATAGAC 537
Query 538 GAAGGCCACATATCATTATAG 558
||||||| ||||||||||||
Sbjct 538 GAAGGCCGTATATCATTATAG 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20375084526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5