BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50720.1
Length=650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495134 jgi|Araly1|495134|fgenesh2_kg.8__950__AT5G50720.1 904 0.0
> Ahg495134 jgi|Araly1|495134|fgenesh2_kg.8__950__AT5G50720.1
Length=667
Score = 904 bits (489), Expect = 0.0
Identities = 616/672 (92%), Gaps = 30/672 (4%)
Strand=Plus/Plus
Query 1 AACAAGAGCGTCCTTTGATTGGTTTTGGATTTTGTTGTGTTCCTCTCAAAATGACAAAAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACAAGAGCGTCCTTTGATTGGTTTTGGATTTTGTTGTGTTCCTCTCAAAATGACAAAAT 60
Query 61 TATGGACTTC-TCTCTCTGCTCTTCATTCCCTCGCTGGACCCGTGGTGATGCTGCTCTAT 119
||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TATGGAC-TCTTCTCTCTGCTCTTCATTCCCTCGCTGGACCCGTGGTGATGCTGCTTTAC 119
Query 120 CCGTTATATGCGTCGGTGATAGCAATAGAGAGCCCATCAAAAGTAGATGACGAGCAATGG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCGTTATATGCGTCGGTGATAGCAATAGAGAGCCCATCAAAAGTAGATGACGAGCAATGG 179
Query 180 CTTGCTTATTGGATTCTCTATTCTTTCCTTACTCTATCAGAACTCATCCTTCAATCTCTC 239
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTTGCTTATTGGATTCTCTACTCTTTCCTTACTCTATCAGAACTCATCCTTCAATCTCTC 239
Query 240 CTAGAGTGGATACCGATATGGTACACGGCGAAGCTAGTGTTTGTGGCATGGTTGGTTTTA 299
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 240 CTAGAGTGGGTACCGATATGGTACACGGCTAAGCTAGTGTTTGTGGCATGGTTGGTTCTG 299
Query 300 CCACAATTTAGAGGAGCTGCTTTTATATACAACAA-AGTCGTGAGGGAACAGTTCAAGAA 358
|| ||||||||||| |||||||| |||||||||| | ||||||||||||||||||||||
Sbjct 300 CCGCAATTTAGAGGGGCTGCTTTCATATACAACAGGA-TCGTGAGGGAACAGTTCAAGAA 358
Query 359 GTACGGCATCCTCAAACCTAAGGTAGAGCATCAGGCTGAGTGAGTCAAAAAGA-GCAGGG 417
||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | | ||
Sbjct 359 GTATGGCATCCTCAAACCTAAGGTAGAACATCAGGCTGAGTGAGTCAAAAAGAAG-ATGG 417
Query 418 GACACAAGAGGGCTTCACTGTTGGGGTCTCCAGTTTCTAATCTCTTTATGCTTTTTCTAT 477
|||| ||||||| ||||||||||||| |||||||||||||||| |||||||||||||| |
Sbjct 418 GACAAAAGAGGGGTTCACTGTTGGGGCCTCCAGTTTCTAATCT-TTTATGCTTTTTCTCT 476
Query 478 TTTGTCTTATTTCTCTTTTGATATACGGAAAAATGGGGTT-G-T-T---CT-TAT---T- 526
||||||||| ||||||||||||||||||||||||||| || | | | || ||| |
Sbjct 477 TTTGTCTTAATTCTCTTTTGATATACGGAAAAATGGGTTTAGATGTTGACTATATGAGTT 536
Query 527 ---ATGAGCCT--CT---GCTTGAATGTAT--GAAAAGACCTTTTATTCGACGTTAAACT 576
|||||||| || |||||||||||| ||||||| |||||||||||||||||| |
Sbjct 537 CTTATGAGCCTAGCTCCTGCTTGAATGTATATGAAAAGAACTTTTATTCGACGTTAAAAT 596
Query 577 ATTATATTAA-AGATTAAAAAATTGTAAATCTTGTGTTGCCACTTCTTAGTCTTTCAAGA 635
|||||||||| |||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 597 ATTATATTAAGAGATTATAAATTT-TAAATCTTGTGTTGCCACTTCTTAGTCTTTCAAGA 655
Query 636 TATCATTGCCTT 647
|||||||||||
Sbjct 656 CATCATTGCCTT 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23826823125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5