BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50740.3
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495136 jgi|Araly1|495136|fgenesh2_kg.8__952__AT5G50740.1 1441 0.0
Ahg887492 jgi|Araly1|887492|Al_scaffold_0063_5 721 0.0
> Ahg495136 jgi|Araly1|495136|fgenesh2_kg.8__952__AT5G50740.1
Length=982
Score = 1441 bits (780), Expect = 0.0
Identities = 874/920 (95%), Gaps = 4/920 (0%)
Strand=Plus/Plus
Query 16 GGAAGATAAGAAAATGGAGGagaagaaatctgaagagccacaagcgaaatcagaagataa 75
|||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||
Sbjct 42 GGAAGATAAGAAAATGGAGGAGAAGAAAGCTGAAGAGCCTCAAGTGAAATCAGAAGATAA 101
Query 76 gaaa-c--cagaagaagagaaaaagaaagaacctcaagagaTTGTGCTTAAGATTTTTAT 132
|||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 102 GAAACCAGCAGAAGAAGAGAAGAAGAAAGAGCCTCAAGAGATTGTGCTTAAGATTTTTAT 161
Query 133 GCATTGTGAAGGTTGTGCTaaaaaaaTCCATAGATGTCTTAAAGGCTTTGAAGGAGTGGA 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 GCATTGTGAAGGTTGTGCTAAAAAAATCCATAGATGTCTTAAAGGCTTTGAAGGAGTGGA 221
Query 193 GGATGTAACTACTGATTGTAAGACTAGTAAAGTTGTGGTGAAAGGAGAGAAGGCAGATCC 252
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 222 AGATGTAACTACTGATTGTAAAACTAGTAAAGTTGTGGTGAAAGGAGACAAGGCAGATCC 281
Query 253 ATTAAAAGTGTTGCAAAGATTGCAGAGGAAGAGCCATCGTCAAGTGGAGCTTATCTCACC 312
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 282 ATTGAAAGTGTTGCAAAGATTGCAGAGGAAGAGTCACCGTCAAGTGGAGCTTATCTCACC 341
Query 313 GATTCCGGAGCCTAAACCGGTTTCTGATGAACCggagaaaaaggagaaggagaaacctaa 372
||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 342 AATTCCGGAGCCTAAACCAGTTTCCGATGTACCGGAGAAAAAGGAGAAGGAGAAACCTAA 401
Query 373 acctgaggagaaaaaagaagaggTAGTGACAGTGGTGCTGAGAGTTCACATGCATTGTGA 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 ACCTGAGGAGAAAAAAGAAGAGGTAGTGACAGTGGTGCTGAGAGTTCACATGCATTGTGA 461
Query 433 AGCATGTGCCATGGAGATTCAAAAGAGGATCATGAGAATGAAAGGAGTGGAGTCTGTGGA 492
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 462 AGCATGTGCCATGGAGATTCAAAAGAGAATCATGAGAATGAAAGGAGTGGAGTCTGTGGA 521
Query 493 ACCAGATTTTAAAGCATCACAAGTGAGCGTGAAAGGAGTTTTTACGCCGGAAAAGCTAGT 552
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 522 ACCAGATTTTAAAGCATCACAAGTGAGTGTGAAAGGAGTTTTTACACCGGAAAAGCTAGT 581
Query 553 TGAGTTCATTTACAAGAGAATCGGGAAGCATGCCGCGGTTGTCAAGCAAGATCCGCCGCC 612
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 582 TGAGTTCATTTACAAGAGAATCGGGAAGCACGCCGCGGTTGTCAAGCAAGACCCGCCGCC 641
Query 613 AAAACCTCCGGagaaagaaaaagaaacgaaagacaaagacgagaagaaaaaggaagaggg 672
|||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 642 AAAACCACCGGAGAAAGAAAAAGAAACGAAAGACAAAGGTGAGAAGAAAAAAGAAGAGGG 701
Query 673 acagcccaaagaaggaaaagaggccaaggaaaaCGGTGGTGGAGGAGGTGCTAAAGGCGA 732
||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 702 ACAACCCAAAGAAGGAAAAGAGGCCAAGGAAGATGGTGGAGGAGGAGGTGCTAAAGGCGA 761
Query 733 TGGTGCTGCCGCGGAGGAGGGGAACAAAGTGGTAGACTTGAAGAAGAACGAATATCAGTA 792
|||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct 762 TGGTGCTGCCGCGGGGGAGGGGAACAAAGTTGTAGACCTAAAGAAGAACGAATATCAGTA 821
Query 793 CCAGCCACCGAGGTACCCCGTGGAGATGTTTGCTTATCCACCGCAGATATTCAGTGATGA 852
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 822 CCAGCCACCGAGGTATCCGGTGGAGATGTTTGCTTATCCACCGCAGATATTCAGTGATGA 881
Query 853 AAACCCCAATGCTTGTACCATTATATAATAAAATCGTCGGTTTAAGGGGTTGTAGGattt 912
|||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 882 GAACCCCAACGCTTGTACCATTATGTAATAAAACCGTCGGTTTAAAGGGTTGTAGGATTT 941
Query 913 gttatttttttactttattt 932
|| | |||||| |||||||
Sbjct 942 ATT-TATTTTTATTTTATTT 960
> Ahg887492 jgi|Araly1|887492|Al_scaffold_0063_5
Length=498
Score = 721 bits (390), Expect = 0.0
Identities = 432/452 (96%), Gaps = 3/452 (1%)
Strand=Plus/Plus
Query 29 ATGGAGGagaagaaatctgaagagccacaagcgaaatcagaagataagaaa-c--cagaa 85
||||||||||||||| |||||||||| |||| ||||||||||||||||||| | |||||
Sbjct 1 ATGGAGGAGAAGAAAGCTGAAGAGCCCCAAGTGAAATCAGAAGATAAGAAACCAGCAGAA 60
Query 86 gaagagaaaaagaaagaacctcaagagaTTGTGCTTAAGATTTTTATGCATTGTGAAGGT 145
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GAAGAGAAGAAGAAAGAGCCTCAAGAGATTGTGCTCAAGATTTTTATGCATTGTGAAGGT 120
Query 146 TGTGCTaaaaaaaTCCATAGATGTCTTAAAGGCTTTGAAGGAGTGGAGGATGTAACTACT 205
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TGTGCTAAAAAAATCCATAGATGTCTTAAAGGCTTTGAAGGAGTGGAAGATGTAACTACA 180
Query 206 GATTGTAAGACTAGTAAAGTTGTGGTGAAAGGAGAGAAGGCAGATCCATTAAAAGTGTTG 265
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GATTGTAAAACTAGTAAAGTTGTGGTGAAAGGAGAGAAGGCAGATCCATTGAAAGTGTTG 240
Query 266 CAAAGATTGCAGAGGAAGAGCCATCGTCAAGTGGAGCTTATCTCACCGATTCCGGAGCCT 325
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 241 CAAAGATTGCAGAGGAAGAGTCACCGTCAAGTGGAGCTTATCTCACCAATTCCGGAGCCT 300
Query 326 AAACCGGTTTCTGATGAACCggagaaaaaggagaaggagaaacctaaacctgaggagaaa 385
||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAACCAGTTTCCGATGTACCGGAGAAAAAGGAGAAGGAGAAACCTAAACCTGAGGAGAAA 360
Query 386 aaagaagaggTAGTGACAGTGGTGCTGAGAGTTCACATGCATTGTGAAGCATGTGCCATG 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGAAGAGGTAGTGACAGTGGTGCTGAGAGTTCACATGCATTGTGAAGCATGTGCCATG 420
Query 446 GAGATTCAAAAGAGGATCATGAGAATGAAAGG 477
|||||||||||||| |||||||||||||||||
Sbjct 421 GAGATTCAAAAGAGAATCATGAGAATGAAAGG 452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37055475324
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5