BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50750.1
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949616 jgi|Araly1|949616|scaffold_801503.1 1688 0.0
Ahg333145 jgi|Araly1|333145|fgenesh1_pm.C_scaffold_63000001 1679 0.0
Ahg317692 jgi|Araly1|317692|fgenesh1_pm.C_scaffold_3000708 281 7e-75
> Ahg949616 jgi|Araly1|949616|scaffold_801503.1
Length=1120
Score = 1688 bits (914), Expect = 0.0
Identities = 1020/1072 (95%), Gaps = 3/1072 (0%)
Strand=Plus/Plus
Query 63 TAAGTACC-AAAAATGGCGGGCTACAACCTCGAAGCTATCGAAGCGGCACCTTTGAAAGA 121
|||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| ||
Sbjct 8 TAAGTACCAAAAAATGGCGGGCTACAACCTCGAAGGTATCAAAGCGGCACCTTTGAAGGA 67
Query 122 CGATCTGGATATTGTGATCCCAACCATCAGAAGCCTCGACTTTCTAGAGCAATGGAGACC 181
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 68 CGATGTGGATATTGTGATCCCAACCATCAGAAGCCTCGACTTTCTAGAACAATGGAGACC 127
Query 182 ATTTTTGCACCATTACCACCTGATCATTGTCCAAGATGGAGACCCTTCCATCAAGATCCG 241
||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 128 ATTTTTGCAGCATTACCACTTGATCATTGTCCAAGATGGAGACCCTTCGATCAAGATTAA 187
Query 242 AGTTCCCGAGGGTTATGACTACGAGCTCTACAACCGTAATGATATCAACAGGATCCTTGG 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 AGTTCCCGAGGGTTATGACTACGAGCTCTACAACCGTAATGATATCAACAGGATCCTTGG 247
Query 302 TCCAAGAGCTAATTGTATCTCCTACAAAGATGGTGGTTGTCGCTGCTTTGGCTTCATGGT 361
||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 248 TCCTAGAGCTAATTGTATCTCATACAAAGATGGTGGTTGTCGTTGCTTCGGCTTCATGGT 307
Query 362 TTCTAAAAAGAAGTATATCTACACCATTGATGATGATTGCTTTGTGGCAAAGGATCCAAG 421
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TTCGAAAAAGAAGTATATCTACACCATTGATGATGATTGCTTTGTGGCAAAGGATCCAAG 367
Query 422 TGGGAAAGACATCAATGTGATAGCTCAGCACATAAAGAACCTTGAAACACCTTCAACACC 481
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TGGGAAAGAGATCAATGTGATAGCTCAGCACATAAAGAACCTTGAAACACCTTCAACACC 427
Query 482 ACACTACTTCAACACTCTCTATGACCCTTTTAGAGATGGAACTGATTTCGTCAGAGGGTA 541
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 428 ACACTACTTTAACACTCTCTATGACCCTTTTAGAGAAGGAACTGATTTCGTCAGAGGGTA 487
Query 542 TCCTTTCAGTCTAAGGGAAGGTGTCCAAACCGCCATATCTCATGGTCTTTGGCTCAACAT 601
|||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 488 TCCTTTCAGTTTAAGGGAAGGTGTCCAAACTGCCATATCTCATGGGCTTTGGCTCAACAT 547
Query 602 CCCTGACTATGATGCCCCAACCCAACTTGTGAAGCCCCGCGAACGTAACACGAGGTATGT 661
|||||| || ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 548 CCCTGATTACGATGCTCCAACCCAACTCGTGAAGCCCCGGGAACGGAACACGAGGTATGT 607
Query 662 GGATGCAGTAATGACAATTCCAAAAAGAGTATTGTACCCAATGTGTGGTATGAATCTTGC 721
|||||||| |||||||| |||||| |||||||||||||||||||||| |||||||||||
Sbjct 608 TGATGCAGTGATGACAATCCCAAAAGGAGTATTGTACCCAATGTGTGGCATGAATCTTGC 667
Query 722 TTTCAATAGAGAGCTTGTTGGACCTGCTATGTACTTTGGACTTATGGGTGAAGGCCAGCC 781
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 668 TTTCAATAGAGAGCTTGTTGGGCCTGCTATGTACTTTGGCCTTATGGGTGAAGGCCAGCC 727
Query 782 CATTTCTCGGTACGATGACATGTGGGCTGGTTGGGCAGCAAAGGTGGTGTGTGACCACTT 841
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 728 CATTTCTCGGTACGATGACATGTGGGCTGGTTGGGCAGCCAAGGTGGTGTGTGACCAGTT 787
Query 842 GGGCTTTGGGGTCAAGACT-GGTCTGCCGTATCTGTGGCACAGCAAAGCCAGTAACCCAT 900
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 788 AGGCTTTGGGGTCAAGACTGGGT-TGCCGTATCTGTGGCACAGCAAAGCCAGTAACCCGT 846
Query 901 TCGTGAACCTGAAGAAAGAGCATAAGGGACTCCACTGGCAAGAAGATATGGTTCCTTTCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TCGTGAACCTGAAGAAAGAGCATAAGGGACTCCACTGGCAAGAAGATATGGTTCCTTTCT 906
Query 961 TCCAAAACCTTCGTCTCTCGAAAGAATCTGACACTGCAGCTAAATGTTATATGGAAATTT 1020
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 907 TCCAAAACCTTTGTCTCTCGAAAGAATCTGACACTGCAGCTAAATGCTATATGGAAATTT 966
Query 1021 CAAATATGACAAAAGAAAAGCTCACTAAAGTGGATCCTTACTTTGAGAAGTTGGCTGATG 1080
| || ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 967 CGAAGATGACAAAAGAAAAGCTTACTAAAGTGGATCCTTACTTTGAGAAATTGGCAGATG 1026
Query 1081 CAATGGTGGTTTGGATTGAGGCGTGGGAGGAGCTTAACCCGCCGGTTAAGAA 1132
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CAATGGTCACTTGGATTGAGGCGTGGGAGGAGCTTAACCCGCCGGTTAAGAA 1078
> Ahg333145 jgi|Araly1|333145|fgenesh1_pm.C_scaffold_63000001
Length=1101
Score = 1679 bits (909), Expect = 0.0
Identities = 1040/1103 (94%), Gaps = 10/1103 (1%)
Strand=Plus/Plus
Query 75 ATGGCGGGCTACAACCTCGAAGCTATCGAAGCGGCACCTTTGAAAGACGATCTGGATATT 134
|||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||
Sbjct 1 ATGGCGGGCTACAACCTCAAAGGTATCGAAGCGGCACCTTTGAAGGACGATGTGGATATT 60
Query 135 GTGATCCCAACCATCAGAAGCCTCGACTTTCTAGAGCAATGGAGACCATTTTTGCACCAT 194
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 61 GTGATCCCAACCATCAGAAGCCTCGACTTTCTAGAACAATGGAGACCATTTTTGCAGCAT 120
Query 195 TACCACCTGATCATTGTCCAAGATGGAGACCCTTCCATCAAGATCCGAGTTCCCGAGGGT 254
|||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 121 TACCACTTGATCATTGTCCAAGATGGAGACCCTTCGATCAAGATTAAAGTTCCCGAGGGT 180
Query 255 TATGACTACGAGCTCTACAACCGTAATGATATCAACAGGATCCTTGGTCCAAGAGCTAAT 314
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TATGACTACGAGCTCTACAACCGTAATGATATCAACAGGATCCTTGGTCCTAGAGCTAAT 240
Query 315 TGTATCTCCTACAAAGATGGTGGTTGTCGCTGCTTTGGCTTCATGGTTTCTAAAAAGAAG 374
|||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 241 TGTATCTCATACAAAGATGGTGGTTGTCGTTGCTTCGGCTTCATGGTTTCGAAAAAGAAG 300
Query 375 TATATCTACACCATTGATGATGATTGCTTTGTGGCAAAGGATCCAAGTGGGAAAGACATC 434
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 301 TATATCTACACCATTGATGATGACTGCTTTGTGGCAAAGGATCCAAGTGGGAAAGAGATC 360
Query 435 AATGTGATAGCTCAGCACATAAAGAACCTTGAAACACCTTCAACACCACACTACTTCAAC 494
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 361 AATGTGATAGCTCAGCACATAAGGAACCTTGAAACACCTTCAACACCACACTACTTTAAC 420
Query 495 ACTCTCTATGACCCTTTTAGAGATGGAACTGATTTCGTCAGAGGGTATCCTTTCAGTCTA 554
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 421 ACTCTCTATGACCCTTTTAGAGAAGGAACTGATTTCGTCAGAGGGTATCCTTTCAGTTTA 480
Query 555 A-GG--GAAGGTGTCCAAACCGCCATATCTCATGGTCTTTGGCTCAACATCCCTGACTAT 611
| || |||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 481 AGGGAAGAAGGTGTCCAAACTGCCATATCTCATGGGCTTTGGCTCAACATCCCTGATTAC 540
Query 612 GATGCCCCAACCCAACTTGTGAAGCCCCGCGAACGTAACACGAGGTATGTGGATGCAGTA 671
||||| ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 541 GATGCTCCAACCCAACTCGTGAAGCCCCGGGAACGGAACACGAGGTATGTTGATGCAGTG 600
Query 672 ATGACAATTCCAAAAAGAGTATTGTACCCAATGTGTGGTATGAATCTTGCTTTCAATAGA 731
|||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 ATGACAATCCCAAAAGGAGTATTGTACCCAATGTGTGGCATGAATCTTGCTTTCAATAGA 660
Query 732 GAGCTTGTTGGACCTGCTATGTACTTTGGACTTATGGGTGAAGGCCAGCCCATTTCTCGG 791
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 GAGCTTGTTGGGCCTGCTATGTACTTTGGCCTTATGGGTGAAGGCCAGCCCATTTCTCGG 720
Query 792 TACGATGACATGTGGGCTGGTTGGGCAGCAAAGGTGGTGTGTGACCACTTGGGCTTTGGG 851
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 721 TACGATGACATGTGGGCTGGTTGGGCAGCCAAGGTGGTGTGTGACCAGTTAGGCTTTGGG 780
Query 852 GTCAAGACT-GGTCTGCCGTATCTGTGGCACAGCAAAGCCAGTAACCCATTCGTGAACCT 910
||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 781 GTCAAGACTGGGT-TGCCGTATCTGTGGCACAGCAAAGCCAGTAACCCGTTCGTGAACCT 839
Query 911 GAAGAAAGAGCATAAGGGACTCCACTGGCAAGAAGATATGGTTCCTTTCTTCCAAAACCT 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAAGAAAGAGCATAAGGGACTCCACTGGCAAGAAGATATGGTTCCTTTCTTCCAAAACCT 899
Query 971 TCGTCTCTCGAAAGAATCTGACACTGCAGCTAAATGTTATATGGAAATTTCAAATATGAC 1030
| |||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 900 TTGTCTCTCGAAAGAATCTGACACTGCAGCTAAATGCTATATGGAAATTTCGAAGATGAC 959
Query 1031 AAAAGAAAAGCTCACTAAAGTGGATCCTTACTTTGAGAAGTTGGCTGATGCAATGGTGGT 1090
|||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 960 AAAAGAAAAGCTTACTAAAGTGGATCCTTACTTTGAGAAATTGGCAGATGCAATGGTCAC 1019
Query 1091 TTGGATTGAGGCGTGGGAGGAGCTTAACCCGCCGGTTAAGAA-GAAGCAG---AGCGATG 1146
|||||||||||||||||||||||||||||||||||||||||| || || | |||||||
Sbjct 1020 TTGGATTGAGGCGTGGGAGGAGCTTAACCCGCCGGTTAAGAATGAGGC-GTTCAGCGATG 1078
Query 1147 GCAAAGATGTCAAGGCCAAGTGA 1169
||||||| |||||||||||||||
Sbjct 1079 GCAAAGAAGTCAAGGCCAAGTGA 1101
> Ahg317692 jgi|Araly1|317692|fgenesh1_pm.C_scaffold_3000708
Length=1125
Score = 281 bits (152), Expect = 7e-75
Identities = 419/543 (77%), Gaps = 38/543 (7%)
Strand=Plus/Plus
Query 114 TTGAAAGACGATCTGGATATTGTGAT-CCCAACCA-TCAGAAGCCTCGACTTTCTAGAGC 171
|||||||| || || || |||||||| ||| |||| || ||| ||| ||||| || ||
Sbjct 40 TTGAAAGATGAGCTAGACATTGTGATACCC-ACCATTC-GAAACCTTGACTTCCTTCAG- 96
Query 172 A-ATGGAGACCATT-TTTGCACCATTACCACCTGATCATTGTCCAAGATGGAGACCCTTC 229
| ||| |||| || |||| | || ||||| ||||||||||| |||||||| || |||||
Sbjct 97 ATGTGGCGACCCTTCTTTG-AACAGTACCATCTGATCATTGTTCAAGATGGTGATCCTTC 155
Query 230 CATCAAGATC--CGA-GTTCCCGAGGGTTAT-GACTACGAGCTCTACAACCGTAATGATA 285
| ||| || | | |||| || |||| | |||||||||||||||||| | || || |
Sbjct 156 GA--AAG-TCATCAACATTCCAGAAGGTT-TCGACTACGAGCTCTACAACAGGAACGACA 211
Query 286 TCAA-CAGGATCCTT-GGT-CCAAGAG-CTAATTGTATCTCCTACAAAGA-TGGTGGTTG 340
|||| | | || ||| ||| ||||| | || ||| || |||| ||| || | || |||
Sbjct 212 TCAATC-GAAT-CTTGGGTCCCAAG-GCCT-CTTGCATTTCCTTCAAGGACT-CTGCTTG 266
Query 341 TCGCTGCTTTGGCTT-CATGGTTTCTAAAAAGAAGTATATCTACACCATTGATGATGATT 399
|| ||||| || || |||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 267 CCGTTGCTTCGG-TTACATGGTCTCCAAAAAGAAGTACATCTACACCATTGATGATGATT 325
Query 400 GCTTTGTGGCAAAGGATCCAAGTGGGAAAGACATCAATGTGATAGCTCAGCACATAAAGA 459
||||||| ||||||||||||| ||||||||| ||||||| | | | ||||| || ||||
Sbjct 326 GCTTTGTTGCAAAGGATCCAACTGGGAAAGAGATCAATGCGCTTGAGCAGCATATCAAGA 385
Query 460 ACCT-TGAAACACCTTCAACACCACACTACTTCAACACTCTCTATGACCCTTTTAGAGAT 518
|||| | | | || ||||| || || | ||| ||||| || ||||| || | ||||||
Sbjct 386 ACCTCTTAT-CTCCATCAACCCCGCATTTCTTTAACACACTTTATGATCCATACAGAGAT 444
Query 519 GGAACTGA-TTTCGT-CAGAGGGTATCCTTTCAGTCTAAGGGAAGGTGTCCA-AACCGCC 575
|| | || ||| || | | || || ||||| ||| | | |||||| ||| ||| ||
Sbjct 445 GGGGCAGACTTT-GTTC-GTGGATACCCTTTTAGTATGCGCAAAGGTG-CCATAACTGCG 501
Query 576 ATATCTCATGGTCTTTGGCTCAACATCCCTGACTATGATGC-CCCAACCCAACTTGTGAA 634
|||||||||| || ||||||||||| |||||||||||||| |||| | || ||||||||
Sbjct 502 GTATCTCATGGCCTCTGGCTCAACATTCCTGACTATGATGCTCCCA-CTCAGCTTGTGAA 560
Query 635 GCC 637
|||
Sbjct 561 GCC 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50855971278
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5