BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50760.1
Length=809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495139 jgi|Araly1|495139|fgenesh2_kg.8__955__AT5G50760.1 1038 0.0
> Ahg495139 jgi|Araly1|495139|fgenesh2_kg.8__955__AT5G50760.1
Length=778
Score = 1038 bits (562), Expect = 0.0
Identities = 737/814 (91%), Gaps = 42/814 (5%)
Strand=Plus/Plus
Query 2 aaaaaaCCAAACGGTCAACCAAAACTTGTCTGACCCACAAACACTTCTTGATTCTGTCAT 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAACCAAACGGTCAACCAAAACTTGTCTGACCCACAAACACTTCTTGATTCTGTCAT 60
Query 62 TGAAAAGAAAACTTTTTAATTTTTGGATACATCATCCTCTCATTGGAAGAGAGAAACAAT 121
||| ||| || |||| |||| |||||||||| ||||| | || | || |||
Sbjct 61 TGAGAAG--AA--TTTT--TTTTAATATACATCATCTTCTCA-T-----AG-G-AATAAT 106
Query 122 GAAGAATCCGATATTGAAGACATGGAGAAAAGTGAAGTCTTTTGGGCATACGAGCTCTTC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 GAAGAATCCGATATTGAAGACATGGAGAAAAGTGAAGTCTTTTGGGCATACGAGCTCTTC 166
Query 182 GACCACACCCTCGTTCACGAAGAGCAAGTCTTGCCATGGCTCTTTTCGTCTCGAGGATGC 241
||| |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||
Sbjct 167 GACTACACCCTCGTTCACGAGGAGCAAATCTTGCCATGGCTCTTTTCGTCTCGAAGATGC 226
Query 242 TAAGAGCAACGAATCAAAAGGAAAGCCGAAGAAAGAGTCGCCGTCACATGGATTTTTCAC 301
||||||||| |||||||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct 227 TAAGAGCAATGAATCAAAAGCAAAGTCGAAGAAAGAGTTGCCGTCACATGGATTTTTCAC 286
Query 302 GGTTTACGTTGGTCCCACGAAACAAAGAATTGTTGTGAAGACAAAACTTCTGAACCATCC 361
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 287 GGTTTACGTTGGTCCCACGAAACAGAGAATTGTCGTGAAGACGAAACTTCTGAACCATCC 346
Query 362 TTTGTTCAAGAACTTGTTAGAAGATGCTGAGACTGAGTATGGATATAGACGCGATGGACC 421
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 347 TTTGTTCAAGAACTTGTTAGAAGATGCTGAGACCGAGTATGGATATAGACGCGATGGACC 406
Query 422 CATTGTTCTTCCTTGTGAGGTTGACTTCTTCTTCAAGGCTTTGGCGGATATGAAGTCTAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 CATTGTTCTTCCTTGTGAGGTTGACTTCTTCTTCAAGGCTTTGGCGGATATGAAGTCTAA 466
Query 482 TCCTGGTCATCatgatcatgatgatgattatgatgatgatgatgGTTTCACGAATTCCCC 541
|| ||||||||||||| ||||||| || |||||||||||||||||||||| ||||| ||
Sbjct 467 TCATGGTCATCATGATGGTGATGATTATGATGATGATGATGATGGTTTCACTAATTCTCC 526
Query 542 GATTTGCGGATTTGTCTGTAGTCCCTATAGATCATACGGTGGTGGTGTTACGGATCCTCT 601
| |||||||||| |||||||||| |||||||| ||||||||||||| || |
Sbjct 527 GGTTTGCGGATTCATCTGTAGTCCATATAGATCTTACGGTGGTGGTGGTA----T----- 577
Query 602 GGCCATGAAACGGAACGGCTCATACAAGCTTCTTCGATCTCCATCTTTGTTCAAGTTGAC 661
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 578 GGCCATGAAACGGAACGGCTCATACAAGCTTCTTCGATCTCCGTCTTTGTTCAAGTTGAA 637
Query 662 TAGATTTTGATTTTCTTCTTCTTTCTTCTATATTATATATCTAAGTTCTTGTTCATAACA 721
|||||||||| ||| || | ||| ||| | | | ||||||||||||||||||||||||||
Sbjct 638 TAGATTTTGAATTT-TT-T-CTT-CTT-T-T-T-ATATATCTAAGTTCTTGTTCATAACA 689
Query 722 TTACCATATAtttttctttttgttttGGCAT---GAGTGGAAATGTGAAAGAAAAACCCT 778
|||||||||| |||| ||||| || ||||| ||||||||||||||||||||| ||||
Sbjct 690 TTACCATATACTTTT-TTTTT-TT--GGCATTATGAGTGGAAATGTGAAAGAAAA-CCCT 744
Query 779 CTCACTTC--C-TAAATTTGAAACAATTAGCTTG 809
|||||||| | ||||||||||||||||||||||
Sbjct 745 CTCACTTCTTCCTAAATTTGAAACAATTAGCTTG 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29888366928
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5