BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50780.1
Length=2724
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495140 jgi|Araly1|495140|fgenesh2_kg.8__956__AT5G50780.1 2152 0.0
Ahg492340 jgi|Araly1|492340|fgenesh2_kg.7__1773__AT4G24970.1 342 7e-93
> Ahg495140 jgi|Araly1|495140|fgenesh2_kg.8__956__AT5G50780.1
Length=2415
Score = 2152 bits (1165), Expect = 0.0
Identities = 1308/1376 (95%), Gaps = 13/1376 (1%)
Strand=Plus/Plus
Query 12 CGTGAAGCAAGAGAATCCGGTAACTA---CTTCTACTCTCTCCACATGGAAACCCGCCGC 68
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 12 CGTGAAGCAAGAGAATCCGGTAACTACTTCTTCTACTCTCTCCACTTGGAAACCCGCCGC 71
Query 69 TAGGAACAAAACCATTCCGCCGCCAGAATCCGTCATCGAACTTAGTAGTAGCAACGAAGG 128
||| ||||||||||| || |||| ||||||||| |||||||||||||||||| |||||||
Sbjct 72 TAGAAACAAAACCATCCCACCGCGAGAATCCGTTATCGAACTTAGTAGTAGCGACGAAGG 131
Query 129 ATCCGAGTTAGGCGAAAATCTCGACGAAATCGCTGAGATTC-AAAGCGTAGACCGAACCG 187
|||||||||||| | ||||||||||| ||||||||| | || ||||||||||||||||||
Sbjct 132 ATCCGAGTTAGGGGCAAATCTCGACGGAATCGCTGATA-TCGAAAGCGTAGACCGAACCG 190
Query 188 GTGGTGATGATGTTTCTGGAACGAAGAGAGCGCGAAGTGATTCTATAGCTTCACCGGCGA 247
|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 GT-G-GA-GATGTTTCTGGAACGAAGAGAGCGCGAAGTGATTCTATAGCTTCACCGGCGA 247
Query 248 AGAGACTAGCGGTTATGATTCCGGATGATGACGAAGAGTTTTTACTATCGACTACTTCTG 307
||| ||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||
Sbjct 248 AGAAACTAGCGGTTATGATTCCGGAGGATGACGAAGGGTTTTTACAATCGACTACGTCTG 307
Query 308 GACAAGCGATTTTGGCTCTTCCGGCTACGCCTTGTAACGTTGTGGCGGCGCC---TTCGT 364
||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 308 GACAAGCGATTTTGGCTCTTCCGGCGACGCCTTGTAACGTTGTGGCGGCCCCTAGTTCGC 367
Query 365 CTTGGGGAAGTTGTAAGCAGTTTTGGAAAGCTGGTGATTATGAAGGAACATCTGGTGGTG 424
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 368 CTTGGGGAAGTTGTAAGCAATTTTGGAAAGCTGGTGATTATGAAGGAACATCTGGTGGTG 427
Query 425 ATTGGGAAGTTTCTGCAGGTGGCTTTGATCATGTGAGAGTACATCCTAAGTTCCTGCATT 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 ATTGGGAAGTTTCTGCAGGTGGCTTTGATCATGTGAGAGTACATCCTAAGTTCCTGCATT 487
Query 485 CCAATGCAACTAGTCACAAATGGTCTCTTGGAGCTTTTGCTGAGCTTTTGGACAATGCTT 544
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 CTAATGCAACTAGTCACAAATGGTCTCTTGGAGCTTTTGCTGAGCTTTTGGACAATGCTT 547
Query 545 TAGATGAGGTTCGTAGTGGAGCTACATTTGTTAATGTAGACATGATCCAGAACAGGAAAG 604
| |||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 548 TGGATGAGGTTCATACTGGAGCTACATTTGTTAATGTAGACATGATCGAGAACAAGAAAG 607
Query 605 ATGGAAGCAAGATGATCTTAATTGAGGACAACGGAGGTGGGATGAATCCTGAAAAGATGC 664
|||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 608 ATGGAAGCAAGATGGTCGTAATTGAGGACAATGGAGGTGGGATGAATCCTGAAAAGATGC 667
Query 665 GGCATTGTATGTCTCTAGGATATTCTGCCAAGAGTAAACTTGCAGATACCATTGGACAAT 724
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GGCATTGTATGTCTCTTGGATATTCTGCCAAGAGTAAACTTGCAGATACCATTGGACAAT 727
Query 725 ATGGTAATGGATTCAAGACTAGTACAATGAGGCTTGGAGCTGATGTCATTGTTTTCTCAC 784
|||| |||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 728 ATGGCAATGGATTCAAGACTAGTACAATGAGACTCGGGGCTGATGTCATTGTTTTCTCAC 787
Query 785 GTTGCCTTGGAAAAGATGGAAAGAGCTCGACGCAGAGCATTGGCCTTCTATCATATACAT 844
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 788 GTTGCCTTGGAAAAGATGGAAAGAGCTCGACACAGAGCATTGGGCTTCTATCATATACAT 847
Query 845 TTCTAAAGAGCACGGGGAAAGAGGACATAGTTGTACCCATGCTTGACTATGAAAGAAGAG 904
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TTCTAAAGAGCACGGGAAAAGAGGACATAGTTGTACCCATGCTTGACTATGAAAGAAGAG 907
Query 905 ATTCTGAATGGTGTCCAATAACGAGGTCTTCGGTTAGTGATTGGGAGAAAAATGTGGAAA 964
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 908 ATTCTGAATGGTGTCCAATAACGAGGTCTTCAGTTAGTGATTGGGAGAAAAATGTGGAAA 967
Query 965 CAGTAGTTCAATGGTCGCC-TTACGCTACTGAAGAAGAACTTCTTTGTCAGTTTAATCTA 1023
|| |||||||||||||||| || | ||||||||||||| |||||| ||||||||||||||
Sbjct 968 CAATAGTTCAATGGTCGCCGTTTC-CTACTGAAGAAGATCTTCTTCGTCAGTTTAATCTA 1026
Query 1024 ATGAAGAAACATGGCACAAGGATAATCATATATAACCTCTGGGAAGATGACGAAGGAATG 1083
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1027 GTGAAGAAACATGGGACAAGGATAATCATATATAACCTCTGGGAAGATGACCAAGGAATG 1086
Query 1084 CTAGAACTTGATTTTGACACTGATCCACATGATATCCAGCTTCGAGGGGTCAATCGGGAT 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 CTAGAACTTGATTTTGACACTGATCCACATGATATCCAGCTTCGAGGGGTCAATCGGGAT 1146
Query 1144 GATAAAAATATTGTTATGGCTTCTCAATTCCCTAACTCTAGACATTACCTGACGTACAAG 1203
|| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1147 GAGAAAAATATTGATATGGCTTCTCAATTCCCTAACTCTAGACATTACCTGACATACAAG 1206
Query 1204 CACTCACTCAGGAGTTACGCCTCTATTCTCTACCTAAAGATTTCACATGAGTTCCGTATC 1263
||||||||||||||||| || ||||||||||||||||||||| ||| |||||||||||||
Sbjct 1207 CACTCACTCAGGAGTTATGCATCTATTCTCTACCTAAAGATTCCACGTGAGTTCCGTATC 1266
Query 1264 ATTCTCCGAGGAAAAGATGTTGAGCATCACAACATAGTAAATGACATGATGCAGACCGAA 1323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1267 ATTCTCCGAGGAAAAGATGTTGAGCATCACAACATAGTAAATGACATGATGCAGACAGAA 1326
Query 1324 AAAATTACTTACCGGCCAAAAGAAGCGGCTGATGGATGCGCTAAGTACTCAAATCT 1379
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1327 AAAATTACTTATCGGCCAAAAGAAGGGGCTGATGGATGCGCTAAGTACTCAAATCT 1382
Score = 1343 bits (727), Expect = 0.0
Identities = 906/989 (92%), Gaps = 25/989 (3%)
Strand=Plus/Plus
Query 1424 TGTCTGCTGTTGTGACCATTGGATTTGTGAAGGATGCAAAACATCATGTGGATGTGCAAG 1483
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1382 TGTCTGCTGTTGTGACCATTGGATTTGTGAAAGATGCAAAACATCATGTGGATGTTCAAG 1441
Query 1484 GCTTCAATGTTTACCACAAAAATCGCCTTATTAAGCCATTTTGGAGGATATGGAATGCGG 1543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1442 GCTTCAATGTTTACCACAAAAATCGCCTTATTAAGCCATTTTGGAGGATATGGAATGCAG 1501
Query 1544 CAGGAAGTGATGGTCGTGGGGTCATAGGTGTCTTGGAAGCTAATTTTGTTGAGCCTGCTC 1603
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1502 CAGGAAGTGATGGTCGTGGGGTCATTGGTGTCTTGGAAGCTAATTTTGTTGAGCCTGCTC 1561
Query 1604 ATGATAAGCAAGGGTTCGAGCGCACAACAGTTTTGTCTAGACTCGAGGCACGTCTACTTC 1663
|||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1562 ATGATAAGCAAGGGTTTGAGCGCACAACAGTTTTGTCTAGGCTCGAGGCACGGCTACTTC 1621
Query 1664 ATATGCAGAAGGATTATTGGAGATCTAAATGTCACAAAATTGGATATGCGAAAAGGCAAG 1723
| ||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1622 AAATGCAGAAGAATTATTGGAGATCTAATTGTCACAAAATTGGATATGCTTCAAGGCAAG 1681
Query 1724 GCAGAAAGTCTGCTAAGGATACTGAAAAGGACACTGAAGACAGAGAATCGTCACCAGAAT 1783
|||||||| | || | | | ||||| ||||||||||||||||||||||||||||
Sbjct 1682 GCAGAAAG--T-CT---G-T--T---AAGGATACTGAAGACAGAGAATCGTCACCAGAAT 1729
Query 1784 TTGATCCTAAAGGATCTGCCTCATCGAGGAAAAGGACCGTTCCTTCGAGCTTTAAAACTC 1843
||||||||||||||||| |||||| |||||||||| || |||||||||||||||||| |
Sbjct 1730 ATGATCCTAAAGGATCTGACTCATCCAGGAAAAGGAACGCTCCTTCGAGCTTTAAAAC-C 1788
Query 1844 C-AACTGCTGCTCCGAGGTTTAATACTCCAACCGCAGCTTCAGAAAAATTCAACCCAAGA 1902
| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1789 CAAACTGCTGCTCCGAACTTTAATACTCCAACCGCAGCTTCAGAAAAATTCAACACAAGA 1848
Query 1903 TCAAATGTGAATGGCGGAGGAAAAGGATCTGTGAAAGTTTCTAAAGACATCGGGTATAAA 1962
|||||||| | | | |||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1849 TCAAATGTTATTCGAGGAGGAAAAGGATCTGTGAAAGATTCTAAAGACATTGGGTATAAA 1908
Query 1963 TCATCAGAGAAAGGTGGT---AAACTTGGAAACTCCTTTTCCAAATCTAACAAACGAGCA 2019
||||||| |||||||||| |||||||||||||||||||||||| || ||||||||||
Sbjct 1909 TCATCAGGGAAAGGTGGTGGTAAACTTGGAAACTCCTTTTCCAAACCTGACAAACGAGCG 1968
Query 2020 AAGCCTCAAGGAGCCCGTGCTGTGGAGGTTACAAATAGTGATGATGACTATGATTGTGAT 2079
||||||||| ||| |||||||||||||| ||||||||||||||||| | | || | ||
Sbjct 1969 AAGCCTCAATTAGCTCGTGCTGTGGAGGTCACAAATAGTGATGATGA-T-T-AT-G--AT 2022
Query 2080 TCTTCACCCGAAAGAAATGTTACTGAGCTGCCTGGGAAGAGTTCTGAACTACCCAAGCCT 2139
||||| || ||||||||||| |||||||| |||| ||||||||||||| |||| |||||
Sbjct 2023 TCTTCGCCAGAAAGAAATGTCACTGAGCTTCCTGAGAAGAGTTCTGAATTACCAAAGCCG 2082
Query 2140 CAGTCTGG-TCCGCGTACCCTGAGTCAATTGGAACAAGAGAATAATGAGTTAAGAGAGAG 2198
|||||||| || ||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 2083 CAGTCTGGCTC-GCGTACCCTCAGTCAATTAGAACAAGAGAATAATGAGTTAAGAGACAG 2141
Query 2199 GCTCGATAAAAAAGAAGAAGTTTTCCTGTTACTGCAAAAGGACCTGCGACGTGAGAGAGA 2258
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 2142 GCTCAATAAAAAAGAAGAAGTCTTCCTGTTACTGCAAAAGGACCTGCGACGTGAGAAAGA 2201
Query 2259 GCTTCGCAAGACACTTGAAGCTGAGGTTGAAACATTAAAGAACAAGTTAAAAGAAATGGA 2318
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 2202 GCTTCGCAAGACACTTGAAGCTGAGGTTCAAACATTAAAGGACAAGTTAGAAGAAATGGA 2261
Query 2319 CAAAGAGCAAGCGAGTTTAATCGATGTTTTCGCAGAGGATAGAGACAGACGCGACAAGGA 2378
|||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2262 TAAAGAGCAAGTGAGTTTAATCGATGTTTTCGCAGAGGATAGAGATAGACGTGACAAGGA 2321
Query 2379 GGAAGAAAATCTCAGAATTAAGCTAGAGG 2407
||||||||| |||||||||||||||||||
Sbjct 2322 GGAAGAAAACCTCAGAATTAAGCTAGAGG 2350
> Ahg492340 jgi|Araly1|492340|fgenesh2_kg.7__1773__AT4G24970.1
Length=2161
Score = 342 bits (185), Expect = 7e-93
Identities = 259/294 (88%), Gaps = 8/294 (3%)
Strand=Plus/Plus
Query 1424 TGTCTGCTGTTGTGACCATTGGATTTGTGAAGGATGCAAAACATCATGTGGATGTGCAAG 1483
||||||| |||| | ||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 1431 TGTCTGCCATTGTAATTATTGGATTTGTGAAGGACGCAAAACATCATGTTGATGTTCAAG 1490
Query 1484 GCTTCAATGTTTACCACAAAAATCGCCTTATTAAGCCATTTTGGAGGATATGGAATGCGG 1543
|||| ||||| |||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1491 GCTTTAATGTCTACCACAAAAATCGGCTCATCAAGCCATTTTGGAGGATATGGAATGCAA 1550
Query 1544 CAGGAAGTGATGGTCGTGGGGTCATAGGTG-TCTTGGAAGCTAATTTTGTTGAGCCTGCT 1602
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1551 CAGGCAGTGATGGTCGTGGGGTCATAGGTGTTC-TGGAAGCTAATTTTGTTGAGCCTGCT 1609
Query 1603 CATGATAAGCAAGGGTTCGAGCGCACAACAGTTTTGTCTAGACTCGAGGCACGTCTACTT 1662
||||||||||||||||| ||||| ||||||||| | |||||||| ||| |||| ||| ||
Sbjct 1610 CATGATAAGCAAGGGTTTGAGCGTACAACAGTTCTCTCTAGACTTGAGTCACGGCTAGTT 1669
Query 1663 CATATGCAGAAGGA-TTATTGGAG-ATCTAAA-TGTCACAAAATTGGATATGCG 1713
|| ||||||||| | ||| ||||| | | ||| |||||||||||||| ||||||
Sbjct 1670 CAAATGCAGAAG-ACTTACTGGAGTA-C-AAACTGTCACAAAATTGGCTATGCG 1720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102767481010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5