BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50790.1
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495141 jgi|Araly1|495141|fgenesh2_kg.8__957__AT5G50790.1 1941 0.0
> Ahg495141 jgi|Araly1|495141|fgenesh2_kg.8__957__AT5G50790.1
Length=1224
Score = 1941 bits (1051), Expect = 0.0
Identities = 1174/1232 (95%), Gaps = 13/1232 (1%)
Strand=Plus/Plus
Query 1 TTGTATCATACATTGAACATAATTCTCAGTATGATCCTGTAGAGTTTACTCGTTCATTCA 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1 TTGTATCATACATTGAACA-GATTCTCAGTATGATCCTGTAGAGTTTACTCGTTCGTTCA 59
Query 61 CTTGTATTCTCTTTCATAGAGGAAGAGAGAGGGAGAGAGTTTCTAATTAATTAGAAGATT 120
||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 60 CTTGTATTCTCTTTCATAGAGGACGAGAGA-GG-GAGAGTTTCTAATTAATTAGAAGA-- 115
Query 121 TTTCTTTCTTTATTTTCTAAACAAGTATTAGACTACTTTGAGAG----AGATATAAAAAT 176
|| |||||||||||||||||||||| ||| ||||||||||||| | ||||||||||
Sbjct 116 -TT-TTTCTTTATTTTCTAAACAAGTGTTACACTACTTTGAGAGATATATATATAAAAAT 173
Query 177 GGCAATTTCACAAGCCGTCTTGGCTACTGTCTTTGGCATCCTAGGGAATATCATCTCCTT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GGCAATTTCACAAGCCGTCTTGGCTACTGTCTTTGGCATCCTAGGGAATATCATCTCCTT 233
Query 237 TTTCGTCTGCCTTGCCCCAATACCGACGTTCGTTCGTATATACAAGAGGAAGTCATCTGA 296
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 234 TTTCGTCTGCCTTGCCCCAATACCGACGTTCGTTCGTATATACAAGAGGAAATCATCTGA 293
Query 297 AGGGTATCAGTCGATCCCTTACGTGATTTCTCTGTTCAGCGCGATGCTATGGATGTACTA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AGGGTATCAGTCGATCCCTTACGTGATTTCTCTGTTCAGCGCGATGCTATGGATGTACTA 353
Query 357 CGCAATGATCAAGAAAGATGCTATGATGTTGATCACTATCAACTCCTTTGCCTTTGTCGT 416
||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 354 TGCAATGATCAAGAAAGATGCTATGATGTTGATCACCATAAACTCCTTTGCCTTTGTCAT 413
Query 417 ACAAATCGTCTACATCTCCTTATTCTTCTTCTACGCTCCTAAGAAGGAAAAGACTCTAAC 476
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 414 ACAAATCGTCTACATCTCCTTATACTTCTTCTACGCTCCTAAGAAGGAAAAGACTCTAAC 473
Query 477 GGTGAAGTTCGTCCTCTTTGTGGATGTTTTGGGTTTCGGCGCAATCTTCGTGTTGACATA 536
|||||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||
Sbjct 474 GGTGAAGTTCGTCCTCTTCGTGGACGTTCTCGGTTTCGGCGCAATCTTCGTGTTGACATA 533
Query 537 CTTTATAATTCATGCCAATAAACGTGTTCAAGTTCTTGGATACATTTGTATGGTCTTTGC 596
|||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 534 CTTTCTGATTCATGCCAATAAACGTGTTCATGTTCTTGGATACATTTGTATGGTCTTTGC 593
Query 597 TCTATCTGTTTTTGTTGCTCCCCTTGGCATAATTAGGAAAGTGATCAAAACGAAGAGCGC 656
||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 594 TCTATCTGTTTTTCTTGCTCCCCTTGGTATCATTAGGAAAGTGATCAAAACGAAGAGCGC 653
Query 657 CGAGTTCATGCCATTCGGTCTCTCCTTCTTCCTCACCTTATCGGCTGTCATGTGGTTTTT 716
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 654 CGAGTTCATGCCATTCGGTCTCTCCTTCTTCCTCACCTTATCGGCTGTGATGTGGTTTTT 713
Query 717 CTACGGACTTCTCCTTAAAGACATGAACATTGCCCTGCCAAATGTTTTGGGTTTCATCTT 776
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 714 CTACGGGCTTCTCCTTAAAGACATGAACATTGCTCTACCAAATGTTTTGGGTTTCATCTT 773
Query 777 TGGAGTACTTCAGATGATTCTTTTCTTGATCTACAAGAAACCAGGGACTAAAGTCTTGGA 836
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 774 TGGAGTACTTCAGATGATTCTTTTCTTGATCTACAAGAAACCTGGGACTAAAGTCTTGGA 833
Query 837 GCCACCAGGGATTAAGCTTCAGGACATATCTGAGCATGTAGTCGATGTTGTGAGGCTAAG 896
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 834 ACCACCAGGGATTAAGCTTCAGGACATATCTGAGCATGTCGTCGATGTTGTGAGGCTAAG 893
Query 897 TACGATGGTTTGCAACTCACAGATGAGAACTTTGGTGCCACAAGACAGTGCCGATATGGA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TACGATGGTTTGCAACTCACAGATGAGAACTTTGGTGCCACAAGACAGTGCCGATATGGA 953
Query 957 AGCAACCATTGATATAGATGAGAAGATCAAAGGAGATATTGAGAAGAATAAGGATGAAAA 1016
||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| ||
Sbjct 954 AGCAACCATTGATATAGATGAGAAGATCAGAGGAGACATTGAGAAGATTAAGGATGACAA 1013
Query 1017 AGAAGTATTTCTCATTTCTAAGAATTAATTAGCTTTTAACTATCAAATGTCGAtgtgtgt 1076
||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1014 AGAAGCATTTCTTATTTCTAAGAATTAATTAGCTTTTAACTATCAACTGTCGATGTGTGT 1073
Query 1077 gggtgtgtgtCTCAGTTTGCTTGCATGTTAAGATAGGGTTTAATGTTTTTATTTGGGTCT 1136
|||||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||| |
Sbjct 1074 GGGTGTGTGTCTAAGTTTGCTTGCATGTTAAGTTAGGGTTTAATCTTTA-ATTTGGGTTT 1132
Query 1137 GATCAGCG-TCATCGTGGatctctccctcttatctgtgatctttgtctctccctctctca 1195
|||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1133 GATCAGCGATCATCGTGCATCTCTCCCACCTATCTGTGATCTTTGTCTCTCCCTCTCTCA 1192
Query 1196 tctcGAATGTAAGATATGTGTTGTTAAATTAA 1227
||||||||||||||||||| ||||||||||||
Sbjct 1193 TCTCGAATGTAAGATATGTCTTGTTAAATTAA 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46776819159
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5