BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50800.1
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497249 jgi|Araly1|497249|fgenesh2_kg.91__1__AT5G50800.1 1524 0.0
Ahg949621 jgi|Araly1|949621|scaffold_801508.1 1387 0.0
> Ahg497249 jgi|Araly1|497249|fgenesh2_kg.91__1__AT5G50800.1
Length=1186
Score = 1524 bits (825), Expect = 0.0
Identities = 1015/1103 (92%), Gaps = 27/1103 (2%)
Strand=Plus/Plus
Query 153 AAACATCAAGAAATGGCTCTAACTAACAATTTATGGGCATTTGTGTTTGGAATCTTGGGT 212
||||| ||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||
Sbjct 108 AAACAAAAAGAAATGGCTCTAACTCACAATGTATGGGCATTTGTGTTCGGAATGTTGGGT 167
Query 213 AACATCATATCATTCGTCGTGTTCTTGGCCCCAGTGCCCACTTTTGTAAGGATATGCAAG 272
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 168 AACATCATATCATTCGTCGTGTTCTTGGCCCCAGTGCCCACGTTTGTACGGATATGCAAG 227
Query 273 AAGAAATCAACCGAAGGTTTTCAGTCTCTACCCTATGTTTCAGCACTTTTTAGCGCGATG 332
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 228 AAGAAATCAACCGAAGGATTTCAGTCTCTTCCCTATGTTTCAGCTCTTTTTAGCGCGATG 287
Query 333 CTTTGGATTTACTACGCTATGCAAAAAGATGGCACAGCCTTTCTTCTCATCACCATAAAC 392
|||||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||||
Sbjct 288 CTTTGGATTTACTACGCTATGCAAAAGGATGGCTCAGGCTTCCTTCTCATCACCATAAAC 347
Query 393 GCTTTTGGATGCGTCATCGAAACCATCTACATCGTCCTCTTTGTCTCCTATGCTAACAAG 452
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 348 GCTGTTGGATGCGTCATCGAAACCATCTACATCGTCCTCTTTGTAACCTATGCTAACAAG 407
Query 453 AAAACTAGAATATCCACTTTGAAAGTTCTTGGTCTCTTGAACTTTTTGGGATTTGCCGCC 512
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 408 AAAACTAGAATATCCACTTTGAAAGTTCTTGGTCTCTTGAACTTTTTGGGTTTTGCTGCC 467
Query 513 ATTGTTCTTGTCTGCGAGCTCTTAACCAAAGGTTCAACACGTGAGAAAGTTCTCGGAGGG 572
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 468 ATTGTTCTTGTCTGCGAGCTCTTAACCGAAGGTTCGACACGTGAGAAAGTTCTCGGAGGG 527
Query 573 ATTTGCGTTGGATTTTCCGTCAGTGTTTTCGCAGCTCCTTTGAGTATCATGAGAGTGGTG 632
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 528 ATTTGCGTTGGATTTTCCGTCAGTGTCTTCGCAGCTCCTTTGAGTATCATGAGAGTGGTG 587
Query 633 GTACGAACAAGAAGTGTGGAGTTTATGCCTTTCTCTTTATCGTTGTTTCTTACAATTAGC 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GTACGAACAAGAAGTGTGGAGTTTATGCCTTTCTCTTTATCGTTGTTTCTTACAATTAGC 647
Query 693 GCCGTCACGTGGCTCTTCTACGGTCTCGCTATTAAAGACTTCTACGTTGCCCTTCCAAAT 752
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 648 GCCGTCACGTGGCTCTTCTACGGTCTCGCTATTAAAGACTTCTACGTTGCGCTTCCAAAT 707
Query 753 GTATTAGGCGCGTTCTTAGGAGCTGTTCAAATGATTCTCTACATAATTTTCAAATACTAC 812
|| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 708 GTGTTGGGCGCGTTCTTAGGAGCTGTTCAAATGATTCTCTACATAATTTTTAAGTACTAC 767
Query 813 AAAACTCCTGTGGCTCAGAAGACAGATAAATCCAAAGACGTGTCCGATCATTCCATCGAC 872
|||| |||| |||||||||||||||| ||||| |||| ||||||||||||||| ||||||
Sbjct 768 AAAATTCCTATGGCTCAGAAGACAGACAAATCTAAAGCCGTGTCCGATCATTCTATCGAC 827
Query 873 ATAGCAAAGCTAACGACCGTCATACCCGGTGCAGTTTTGGATTCCGCGGTTCATCAACCG 932
|||||||||||||| ||||||| ||||||| || ||| |||||| || ||||||||||||
Sbjct 828 ATAGCAAAGCTAACCACCGTCACACCCGGTCCAATTTCGGATTCAGCAGTTCATCAACCG 887
Query 933 CCTGCTC-TTCACAATGTTCCCGAGACTAAAATTCAA-TTGACCGAGGTCAAGAGCCAGA 990
||| || ||||||||||||| |||||| |||||||| || || |||||||||||||| |
Sbjct 888 CCT-CTTATTCACAATGTTCCGGAGACTCAAATTCAAGTT-ACTGAGGTCAAGAGCCAAA 945
Query 991 ACATGACCGATCCGAAAGACCAGATCAACAAGGATGTCCAGAAACAAAGTCAAGTTTAAG 1050
|||| || ||||| ||||| || ||||||||||||||| |||| ||||||||||||||||
Sbjct 946 ACATAACTGATCCAAAAGATCAAATCAACAAGGATGTCGAGAACCAAAGTCAAGTTTAAG 1005
Query 1051 TAGTGAATCTTATTTAGAGCCTCATTAATAATGCATTGTTTGAGTTGTGCACTCTAGCTA 1110
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 TAGTGAATCTTATTTAGAGACTCATTAATAATGCATTGTTTGAGTTGTGCACTCTAGCTA 1065
Query 1111 ACTTTCCTTT-TACTGTAGCTTTTTGGATTTTGTGGTCTTTGTCTCTTTAATTAGTTTTC 1169
|||||| ||| |||| ||||||||| ||||||||||| || || ||| |
Sbjct 1066 ACTTTC-TTTCTACTCTAGCTTTTTCGATTTTGTGGT-TTAGT-TCTC-----------C 1111
Query 1170 TTGTACCACTTTTTATTTCTCATCATTTTCATTCCAGGGTATCTGGAAATTGTGCTATAT 1229
| |||||||||||| || | ||||||||| ||||||||||||||||||||||||||| |
Sbjct 1112 T-GTACCACTTTTTGTT-C--ATCATTTTCTTTCCAGGGTATCTGGAAATTGTGCTATGT 1167
Query 1230 ATGATCAATAAATAAGTTGTTTT 1252
| ||||||||||||||||||
Sbjct 1168 -T---CAATAAATAAGTTGTTTT 1186
Score = 76.8 bits (41), Expect = 3e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 89 CTTTTTCCCGCTCATAAGTTTTTTCGATAGTCCGACCAAACAAA 132
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 71 CTTTTCCCCGCTCATAAGTTTTTTCGATAGTCCGACCAAACAAA 114
> Ahg949621 jgi|Araly1|949621|scaffold_801508.1
Length=926
Score = 1387 bits (751), Expect = 0.0
Identities = 869/927 (94%), Gaps = 3/927 (0%)
Strand=Plus/Plus
Query 145 TAATCAAGAAA-CATCAAGAAATGGCTCTAACTAACAATTTATGGGCATTTGTGTTTGGA 203
||||| ||||| || ||||||||||||||||| ||||| |||||||||||||||| ||
Sbjct 1 TAATCCAGAAACCAGAAAGAAATGGCTCTAACTCACAATGTATGGGCATTTGTGTTCGGC 60
Query 204 ATCTTGGGTAACATCATATCATTCGTCGTGTTCTTGGCCCCAGTGCCCACTTTTGTAAGG 263
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 61 ATCATGGGTAACATCATATCATTCGTCGTGTTCTTGGCCCCAGTGCCCACGTTTGTACGG 120
Query 264 ATATGCAAGAAGAAATCAACCGAAGGTTTTCAGTCTCTACCCTATGTTTCAGCACTTTTT 323
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 121 ATATGCAAGAAGAAATCAACCGAAGGATTTCAGTCTCTTCCCTATGTTTCAGCTCTTTTT 180
Query 324 AGCGCGATGCTTTGGATTTACTACGCTATGCAAAAAGATGGCACAGCCTTTCTTCTCATC 383
||||||||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||
Sbjct 181 AGCGCGATGCTTTGGATTTACTACGCTATGCAAAAGGATGGCTCAGGCTTCCTTCTCATC 240
Query 384 ACCATAAACGCTTTTGGATGCGTCATCGAAACCATCTACATCGTCCTCTTTGTCTCCTAT 443
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 ACCATAAACGCTGTTGGATGCGTCATCGAAACCATCTACATCGTCCTCTTTGTAACCTAT 300
Query 444 GCTAACAAGAAAACTAGAATATCCACTTTGAAAGTTCTTGGTCTCTTGAACTTTTTGGGA 503
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTAACAAGAAAACTAGAATATCCACTTTGAAAGTTCTTGGTCTCTTGAACTTTTTGGGT 360
Query 504 TTTGCCGCCATTGTTCTTGTCTGCGAGCTCTTAACCAAAGGTTCAACACGTGAGAAAGTT 563
||||| ||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||
Sbjct 361 TTTGCTGCCATTGTTCTTGCCTGCGAGCTATTAACCGAAGGTTCGACACGTGAGAAAGTT 420
Query 564 CTCGGAGGGATTTGCGTTGGATTTTCCGTCAGTGTTTTCGCAGCTCCTTTGAGTATCATG 623
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 421 CTCGGAGGGATTTGCGTTGGGTTTTCCGTCAGTGTCTTCGCAGCTCCTTTGAGTATCATG 480
Query 624 AGAGTGGTGGTACGAACAAGAAGTGTGGAGTTTATGCCTTTCTCTTTATCGTTGTTTCTT 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGAGTGGTGGTACGAACAAGAAGTGTGGAGTTTATGCCTTTCTCTTTATCGTTGTTTCTT 540
Query 684 ACAATTAGCGCCGTCACGTGGCTCTTCTACGGTCTCGCTATTAAAGACTTCTACGTTGCC 743
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACAATTAGCGCCGTCACGTGGCTCTTCTACGGTCTCGCTATTAAAGACTTCTACGTTGCG 600
Query 744 CTTCCAAATGTATTAGGCGCGTTCTTAGGAGCTGTTCAAATGATTCTCTACATAATTTTC 803
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTCCAAATGTGTTGGGCGCGTTCTTAGGAGCTGTTCAAATGATTCTCTACATAATTTTC 660
Query 804 AAATACTACAAAACTCCTGTGGCTCAGAAGACAGATAAATCCAAAGACGTGTCCGATCAT 863
|| ||||||||||||||| |||||||||||||||| ||||| |||| |||||||||||||
Sbjct 661 AAGTACTACAAAACTCCTATGGCTCAGAAGACAGACAAATCTAAAGCCGTGTCCGATCAT 720
Query 864 TCCATCGACATAGCAAAGCTAACGACCGTCATACCCGGTGCAGTTT-TGGATTCCGCGGT 922
||||||||||||||||||||||| ||||||| ||||||| || ||| || |||| || ||
Sbjct 721 TCCATCGACATAGCAAAGCTAACCACCGTCACACCCGGTCCAATTTCTG-ATTCAGCAGT 779
Query 923 TCATCAACCGCCTGCTCTTCACAATGTTCCCGAGACTAAAATTCAATTGACCGAGGTCAA 982
|||||||||||||| | |||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 780 TCATCAACCGCCTGTTATTCACAATGTTCCCGAGACTCAAATTCAAGTGACTGAGGTCAA 839
Query 983 GAGCCAGAACATGACCGATCCGAAAGACCAGATCAACAAGGATGTCCAGAAACAAAGTCA 1042
|||||| ||||| || ||||| ||||| || ||||||||||||||| |||| ||||||||
Sbjct 840 GAGCCAAAACATAACTGATCCAAAAGATCAAATCAACAAGGATGTCGAGAACCAAAGTCA 899
Query 1043 AGTTTAAGTAGTGAATCTTATTTAGAG 1069
|||||||||||||||||||||||||||
Sbjct 900 AGTTTAAGTAGTGAATCTTATTTAGAG 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46776819159
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5