BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50810.1 Length=582 Score E Sequences producing significant alignments: (Bits) Value Ahg495143 jgi|Araly1|495143|fgenesh2_kg.8__959__AT5G50810.1 608 1e-173 > Ahg495143 jgi|Araly1|495143|fgenesh2_kg.8__959__AT5G50810.1 Length=462 Score = 608 bits (329), Expect = 1e-173 Identities = 432/477 (91%), Gaps = 25/477 (5%) Strand=Plus/Plus Query 1 GTAGCCTTTTGGGGTTTTTGAGAAAAG-TTTTTAGGGTTTTCAGTCGCTGAGAACAATTT 59 ||| |||||||||| |||| || || ||||||||| ||||||||||||||||||| Sbjct 1 GTATCCTTTTGGGG-TTTT-AG---AGTTTTTTAGGG-TTTCAGTCGCTGAGAACAA--- 51 Query 60 TCTTCTCCTTCTTCTTCTTCAAGCAGAGACGCTCTC-AGCTC-ACCAGACATGGATCCTA 117 | || | ||||||||||||||||||||||||||||| | ||| ||| ||||||||||||| Sbjct 52 T-TT-T-CTTCTTCTTCTTCAAGCAGAGACGCTCTCTA-CTCAACC-GACATGGATCCTA 106 Query 118 GCATGGCAAACAACCCGGAATTGCTTCAATTCCTCGCCCAAGAGAAAGAAAGAGCAATGG 177 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 107 ACATCGCAAACAACCCAGAATTGCTTCAATTCCTCGCCCAAGAGAAAGAAAGAGCAATGG 166 Query 178 TGAACGAAATGGT-GTCGAAGATGACAAGTGTGTGCTGGGACAAATGCATCACAAGCGCA 236 |||| |||||||| | ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 167 TGAATGAAATGGTAG-CGAAGATGACAAGTGTGTGTTGGGACAAATGCATCACAAGCGCA 225 Query 237 CCGGGAAGTAAGTTCAGCTCAAGCGAGAGTTCTTGCCTCACTCATTGTGCTCAACGCTAC 296 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 226 CCGGGAAGTAAGTTCAGCTCGAGCGAGAGTTCTTGCCTCACTCATTGTGCGCAACGCTAC 285 Query 297 ATGGATATGAGTATGATCATCATGAAACGCTTTAATTCGCAGTAAAATTGATT--G--GA 352 |||||||||||||||||| |||||||||||||| | ||||||||| |||||| | || Sbjct 286 ATGGATATGAGTATGATCCTCATGAAACGCTTTCAGTCGCAGTAAGATTGATCAAGTTGA 345 Query 353 G--GATATCATACTTGTTGGAATTTTAATTTATCCtttttttGTTTCTCTTGGCAAGTGT 410 | |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 346 TTTGTTATCATACTTGTTGGAATTTGAATTTATCCTTTTTGTGTTTCTCTTGGCAAGTGT 405 Query 411 TGAAATCCCTTTTATTACTCTAGTGATCTTGCAAGAGTATTCTCGGATAAGTGTTTT 467 | ||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 TAAAAACCTTTTTATTACTCTAGTGATCTTGCAAGAGTATTCTCGGATAAGTGTTTT 462 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21290818662 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5