BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G50810.1

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495143 jgi|Araly1|495143|fgenesh2_kg.8__959__AT5G50810.1          608    1e-173


> Ahg495143 jgi|Araly1|495143|fgenesh2_kg.8__959__AT5G50810.1
Length=462

 Score =  608 bits (329),  Expect = 1e-173
 Identities = 432/477 (91%), Gaps = 25/477 (5%)
 Strand=Plus/Plus

Query  1    GTAGCCTTTTGGGGTTTTTGAGAAAAG-TTTTTAGGGTTTTCAGTCGCTGAGAACAATTT  59
            ||| |||||||||| |||| ||   || ||||||||| |||||||||||||||||||   
Sbjct  1    GTATCCTTTTGGGG-TTTT-AG---AGTTTTTTAGGG-TTTCAGTCGCTGAGAACAA---  51

Query  60   TCTTCTCCTTCTTCTTCTTCAAGCAGAGACGCTCTC-AGCTC-ACCAGACATGGATCCTA  117
            | || | ||||||||||||||||||||||||||||| | ||| ||| |||||||||||||
Sbjct  52   T-TT-T-CTTCTTCTTCTTCAAGCAGAGACGCTCTCTA-CTCAACC-GACATGGATCCTA  106

Query  118  GCATGGCAAACAACCCGGAATTGCTTCAATTCCTCGCCCAAGAGAAAGAAAGAGCAATGG  177
             ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  107  ACATCGCAAACAACCCAGAATTGCTTCAATTCCTCGCCCAAGAGAAAGAAAGAGCAATGG  166

Query  178  TGAACGAAATGGT-GTCGAAGATGACAAGTGTGTGCTGGGACAAATGCATCACAAGCGCA  236
            |||| |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  167  TGAATGAAATGGTAG-CGAAGATGACAAGTGTGTGTTGGGACAAATGCATCACAAGCGCA  225

Query  237  CCGGGAAGTAAGTTCAGCTCAAGCGAGAGTTCTTGCCTCACTCATTGTGCTCAACGCTAC  296
            |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  226  CCGGGAAGTAAGTTCAGCTCGAGCGAGAGTTCTTGCCTCACTCATTGTGCGCAACGCTAC  285

Query  297  ATGGATATGAGTATGATCATCATGAAACGCTTTAATTCGCAGTAAAATTGATT--G--GA  352
            |||||||||||||||||| |||||||||||||| | ||||||||| ||||||   |  ||
Sbjct  286  ATGGATATGAGTATGATCCTCATGAAACGCTTTCAGTCGCAGTAAGATTGATCAAGTTGA  345

Query  353  G--GATATCATACTTGTTGGAATTTTAATTTATCCtttttttGTTTCTCTTGGCAAGTGT  410
               | |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct  346  TTTGTTATCATACTTGTTGGAATTTGAATTTATCCTTTTTGTGTTTCTCTTGGCAAGTGT  405

Query  411  TGAAATCCCTTTTATTACTCTAGTGATCTTGCAAGAGTATTCTCGGATAAGTGTTTT  467
            | ||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  406  TAAAAACCTTTTTATTACTCTAGTGATCTTGCAAGAGTATTCTCGGATAAGTGTTTT  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21290818662


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5