BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50820.1
Length=701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495144 jgi|Araly1|495144|fgenesh2_kg.8__960__AT5G50820.1 1136 0.0
> Ahg495144 jgi|Araly1|495144|fgenesh2_kg.8__960__AT5G50820.1
Length=709
Score = 1136 bits (615), Expect = 0.0
Identities = 679/709 (96%), Gaps = 8/709 (1%)
Strand=Plus/Plus
Query 1 ATGGACATTTCTGCGCAGAGATTTGCCATGAACGGAAGAAGCATGAGACTCCCTCCCGGG 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACATTTCTGCGCAGAGATTTGCTATGAACGGAAGAAGCATGAGACTCCCTCCCGGG 60
Query 61 TTTCGGTTCGATCCCGATGATGAAGATCTTGTGTTCGAGTATCTCGCCAAGAAGGTCCTC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTCGGTTTGATCCCGATGATGAAGATCTTGTGTTCGAGTATCTCGCCAAGAAGGTCCTC 120
Query 121 CACCGTCCAATGGACTTCGATCTCCCTGAGCTCCGTTCTTGCAATGTTGATCCATGGGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CACCGTCCAATGGACTTCGATCTCCCTGAGCTCCGTTCTTGCAATGTTGATCCTTGGGAC 180
Query 181 TTGCTAGgagagaagaacaaggaagtgtattacttcgtgaagaaggaagagcgagagagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGCTAGGAGAGAAGAACAAGGAAGTGTATTACTTCGTGAAGAAGGAAGAGCGAGAGAGG 240
Query 241 aagggaagagagaCGTTATCCGGTTATTGGGAAGAGTGTGAAGAAGAGGAAGTAATGGAG 300
|||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||
Sbjct 241 AAGGGAAGAGAGACGTTATCGGGTTATTGGGAAGAGTGTGAAGAAGAAGCAGTAATGGAG 300
Query 301 GCTGGTGGTCGTGATTGTATTCATTTAGAAGGAAGGAGAAAGACATTTGCTTTCTTTATT 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GCTGGTGATCGTGATTGTATTCATTTAGAAGGAAGGAGAAAGACATTTGCTTTCTATATT 360
Query 361 GGaaaaaaaCCTCGAGGGACAATAACTCCATGGATCATGTACGAGTTCCGACTTCTTTCC 420
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GGAAAAAAACCTCGAGGAACAATAACTCCATGGATCATGTACGAATTCCGACTTCTTTCC 420
Query 421 TCTAGAGCTACAAGGTGGTCATCGTCCCCTCTACCTCGGGGTGAGGTAGGAAAATGGAGG 480
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 TCTAGCGCTACAAGGTGGTCATCGTCCCCTCTACCTCGGGGTGAGGTAGGGAAATGGAGG 480
Query 481 GCGGTGAAAGTCGTAGTGAAGGAAGAGAATGATGAAGAGATGGTGGAGGATGAGCACGAG 540
||||||||||| || || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 GCGGTGAAAGTTGTGGTTAAGGAAGAGAATGAGGAAGAGATGGTGGAGGATGAGCACGAG 540
Query 541 TCTGACGAGTCTGATGGCGAGGAAGTTATTCAAAGCCGGTGACGACCGAGGTTGATGCCA 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 TCTGACGAGTCTGATGGCGAGGAAGTTATTCAAAGCCGGTGACCACCGAGGTTGATGCCA 600
Query 601 TAAATATATGTACTTGGTTTTGTGGTGAATCGTTTGAATTTAGTTA----CTA--T-T-G 652
|| |||||||||||||||||||||||||||| |||| ||||||||| ||| | | |
Sbjct 601 TATATATATGTACTTGGTTTTGTGGTGAATCATTTGGATTTAGTTAGTAACTAAGTATTG 660
Query 653 TTAGGATATTAGGGAACATCTAAATGAAATATATATGCATGATTTGTCT 701
|||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 TTAGCATATTAGGGAACATCTAAATGAAATATATATGCTTGATTTGTCT 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25771091892
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5