BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50820.1 Length=701 Score E Sequences producing significant alignments: (Bits) Value Ahg495144 jgi|Araly1|495144|fgenesh2_kg.8__960__AT5G50820.1 1136 0.0 > Ahg495144 jgi|Araly1|495144|fgenesh2_kg.8__960__AT5G50820.1 Length=709 Score = 1136 bits (615), Expect = 0.0 Identities = 679/709 (96%), Gaps = 8/709 (1%) Strand=Plus/Plus Query 1 ATGGACATTTCTGCGCAGAGATTTGCCATGAACGGAAGAAGCATGAGACTCCCTCCCGGG 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGGACATTTCTGCGCAGAGATTTGCTATGAACGGAAGAAGCATGAGACTCCCTCCCGGG 60 Query 61 TTTCGGTTCGATCCCGATGATGAAGATCTTGTGTTCGAGTATCTCGCCAAGAAGGTCCTC 120 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTTCGGTTTGATCCCGATGATGAAGATCTTGTGTTCGAGTATCTCGCCAAGAAGGTCCTC 120 Query 121 CACCGTCCAATGGACTTCGATCTCCCTGAGCTCCGTTCTTGCAATGTTGATCCATGGGAC 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 CACCGTCCAATGGACTTCGATCTCCCTGAGCTCCGTTCTTGCAATGTTGATCCTTGGGAC 180 Query 181 TTGCTAGgagagaagaacaaggaagtgtattacttcgtgaagaaggaagagcgagagagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTGCTAGGAGAGAAGAACAAGGAAGTGTATTACTTCGTGAAGAAGGAAGAGCGAGAGAGG 240 Query 241 aagggaagagagaCGTTATCCGGTTATTGGGAAGAGTGTGAAGAAGAGGAAGTAATGGAG 300 |||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| Sbjct 241 AAGGGAAGAGAGACGTTATCGGGTTATTGGGAAGAGTGTGAAGAAGAAGCAGTAATGGAG 300 Query 301 GCTGGTGGTCGTGATTGTATTCATTTAGAAGGAAGGAGAAAGACATTTGCTTTCTTTATT 360 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 301 GCTGGTGATCGTGATTGTATTCATTTAGAAGGAAGGAGAAAGACATTTGCTTTCTATATT 360 Query 361 GGaaaaaaaCCTCGAGGGACAATAACTCCATGGATCATGTACGAGTTCCGACTTCTTTCC 420 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 361 GGAAAAAAACCTCGAGGAACAATAACTCCATGGATCATGTACGAATTCCGACTTCTTTCC 420 Query 421 TCTAGAGCTACAAGGTGGTCATCGTCCCCTCTACCTCGGGGTGAGGTAGGAAAATGGAGG 480 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 421 TCTAGCGCTACAAGGTGGTCATCGTCCCCTCTACCTCGGGGTGAGGTAGGGAAATGGAGG 480 Query 481 GCGGTGAAAGTCGTAGTGAAGGAAGAGAATGATGAAGAGATGGTGGAGGATGAGCACGAG 540 ||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 481 GCGGTGAAAGTTGTGGTTAAGGAAGAGAATGAGGAAGAGATGGTGGAGGATGAGCACGAG 540 Query 541 TCTGACGAGTCTGATGGCGAGGAAGTTATTCAAAGCCGGTGACGACCGAGGTTGATGCCA 600 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 541 TCTGACGAGTCTGATGGCGAGGAAGTTATTCAAAGCCGGTGACCACCGAGGTTGATGCCA 600 Query 601 TAAATATATGTACTTGGTTTTGTGGTGAATCGTTTGAATTTAGTTA----CTA--T-T-G 652 || |||||||||||||||||||||||||||| |||| ||||||||| ||| | | | Sbjct 601 TATATATATGTACTTGGTTTTGTGGTGAATCATTTGGATTTAGTTAGTAACTAAGTATTG 660 Query 653 TTAGGATATTAGGGAACATCTAAATGAAATATATATGCATGATTTGTCT 701 |||| ||||||||||||||||||||||||||||||||| |||||||||| Sbjct 661 TTAGCATATTAGGGAACATCTAAATGAAATATATATGCTTGATTTGTCT 709 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25771091892 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5