BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50830.2
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495145 jgi|Araly1|495145|fgenesh2_kg.8__961__AT5G50830.2 1812 0.0
> Ahg495145 jgi|Araly1|495145|fgenesh2_kg.8__961__AT5G50830.2
Length=1283
Score = 1812 bits (981), Expect = 0.0
Identities = 1200/1302 (92%), Gaps = 30/1302 (2%)
Strand=Plus/Plus
Query 1 CTCGGATTCCTAAATATTATCATTCATTCATCATCCTCCCAACTCATTGGCTCTCTTCTC 60
|||| |||||||| |||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1 CTCGTATTCCTAATTATTATCATTCATTCATCATCCTCCCAATTAATTGGCTCTCTTCTC 60
Query 61 TCCTCTCCTTTGCCTATTTTCTAAAATCTTCTCCGGCCACCCACCGGCCACCTTATGATC 120
|||||||||||||||||||| || ||||||||| ||||||||||| ||| || |||||||
Sbjct 61 TCCTCTCCTTTGCCTATTTTTTACAATCTTCTCAGGCCACCCACCCGCCGCCGTATGATC 120
Query 121 TTTTTGGTGGCGGCGATTACACCATCAATTTGTTAGTTTATTTATATATTAATATGGGTT 180
||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 121 TTTTTGGTGGCGGCGATTACACCATCAATTTGTTAGTTT-CTT-T-TATTAATATGGGTT 177
Query 181 GCGGTGGCTCGAGGCTTGGAGGTGTGGCGACGACAAGGGCGGAAGAAGGCGGGGTTGTGC 240
||||||||||||| ||||| ||||||||| | || ||||||||||||| ||| |||||||
Sbjct 178 GCGGTGGCTCGAGACTTGGGGGTGTGGCGGCAACTAGGGCGGAAGAAGCCGGTGTTGTGC 237
Query 241 CACTTCCAGCGGGAATACGTCCCCTTCTCCGGCGAAGGTTAGAGGAGATGAAGAAACGGA 300
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 238 CACTTCCAGCTGGAATACGTCCGCTTCTCCGGCGAAGGTTAGAGGAGATGAAGAAACGGA 297
Query 301 GCCATGCAGGCGTCTTGAAAGGGAGCCAGACGTTGTCTAAGAAAGAGCTTCTTAGGCATA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 GCCATGCAGGCGTCTTGAAAGGGAGCCAGACGTTGTCTAAGAAAGAGCTTCTTCGGCATA 357
Query 361 ACTCTTCCGAGGACGGAGAAGATACGGAGGAGAACGACGGTAGCTTGAAGGCGTCCGCTA 420
|||||||||||||||||||||| |||||||||||||| |||||||||||| |||| ||||
Sbjct 358 ACTCTTCCGAGGACGGAGAAGACACGGAGGAGAACGAAGGTAGCTTGAAGTCGTCGGCTA 417
Query 421 AGGTTGCTCCGGCGCCTGATCATAATGTAGAAGAGAAGAAAGAGGTTATTTATGAAAAGA 480
|||| |||||||| ||||||||| | || |||||||||||||||||||||||||||||||
Sbjct 418 AGGTGGCTCCGGCTCCTGATCATCACGTGGAAGAGAAGAAAGAGGTTATTTATGAAAAGA 477
Query 481 TTCCATCCAAAGATGATGTTAAAGAGGTGAAGGAAGAAGTAGTTGTGAACAAACAAGAAG 540
||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||
Sbjct 478 TTCCATCCAAAGATGATTTTAAAGAGGTGAAGGAAGAAGTGGTTGTGAAGAAACAAGAAG 537
Query 541 AGGACAATCATCATCAAGATGTTGTGGAGAAACAAGAGGAGGAAAATAAAGAGGTTGTGA 600
|||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 538 AGGAAAATCATCATCAAGATGTTGTGAAGAAACAAGATGAGGAAAATAAAGAGGTTGTGG 597
Query 601 AGAAGCAAGAGGAGGAAAATCATGATGATGATGTGGTCGTCATCAATGTTAAGAAGGAAG 660
|||| ||||| ||||||||||| |||||||||||| | ||||||||||||||| ||||
Sbjct 598 AGAAACAAGATGAGGAAAATCAACATGATGATGTGG-C--CATCAATGTTAAGAAAGAAG 654
Query 661 GAGATGATGGTAAGAATCATGATGTTGATGAAGGGAGTATCAACAACTTTGATGAGAGAA 720
||||| || |||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 655 AAGATGTTGTTAAGAATCATGATGATAATGAAGGGAGTATGAACAACTTTGATGAGAGAA 714
Query 721 TGATTGGTCCTGGATCTCCAAGCTTTAGGGTTTATTGCGTCGATGTTCCTTCTGATGATG 780
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGATAGGTCCTGGATCTCCAAGCTTTAGGGTTTATTGCGTCGATGTTCCTTCTGATGATG 774
Query 781 ATGATGAAGAAAAAGATGTAGAAGACGCGAGAAAGTCGATGGAAACCGAAAGCGTCACGA 840
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 775 ATGATGAAGAAAAAGATGGAGAAGACACGAGAAAGTCGATGGAAACCGAAAGCGTCATGA 834
Query 841 CAGAGATAAAAGAGGTGGACGGAAGCATTGTCaaaaaggagaaaaaagaaagaagaggaa 900
||||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||
Sbjct 835 CAGAGATAAAAGAGGTGGACGAAAGCATCGTCAAAAAGGATAAAAGGGAAAGAAGAGGAA 894
Query 901 agaGGTTCGGAATCGCATTGCCGAGGAAGTATTTAGCAAATGTGACTGCGCCGTGCTATG 960
|||||||||||| | ||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 895 GGAGGTTCGGAATGGGATTGCCGAGGAAGTATTTAGCCAATGTGACTGCGCCATGCTATG 954
Query 961 CAGGTGGAGGATGCATGGGAAACACTCATTCTCGTTTGGTGCAAGAGAAATCGAGCCAGT 1020
| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 955 CCGGTGGAGGATGCATGGGGAACACTCATTCTCGTTTGGTGCAAGAGAAATCGAACCAGT 1014
Query 1021 GATCGATCAAAATATGTTTGCCATCTTTGCATTGACTGATTTGTTGAAGTAAGAATGGTG 1080
||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1015 GAT--AT--------GTTTGCCATCTTTGCATGGACTGATTTGTTGAAGTAAGAATGGTG 1064
Query 1081 TGGTGTACGTACGGGA-TCACGATGAATAATCAAAACCACCT-----T--A--CGATTTT 1130
|||||||||||||||| | | ||||| | |||||||||||| | | |||||||
Sbjct 1065 TGGTGTACGTACGGGAATGATGATGATTGATCAAAACCACCACACCATGGAAACGATTTT 1124
Query 1131 AGACCTTTGATTTGTTTTAAGAGACGCTTGTTTCAGAATTTGTACAACCTCTTCTTCTTC 1190
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AGACCTTTGATTTGTTTTAAGAGACGCTTGTTTCAGAATTTGTACAACCTCTTCTTC--- 1181
Query 1191 ACCTTTGCTTTCTTTGATCAGGATAATTAAGTTAGTGTTTGACGAATTTACTTTTTTCCA 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 ACCTTTGCTTTCTTTGATCAGGATAATTAAGTTAGTGTTTGACGAATTTACTTTTTTCCA 1241
Query 1251 CGTGGAAAGATGTAATTAATT-GAACTTGTGCAATaaaaaaa 1291
||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1242 CGTGGAAAGATGTAAGTAATTTGAACTTGTGCAATAAAAAAA 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49674160851
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5