BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50850.1
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331474 jgi|Araly1|331474|fgenesh1_pm.C_scaffold_8000817 1825 0.0
> Ahg331474 jgi|Araly1|331474|fgenesh1_pm.C_scaffold_8000817
Length=1101
Score = 1825 bits (988), Expect = 0.0
Identities = 1065/1101 (97%), Gaps = 9/1101 (1%)
Strand=Plus/Plus
Query 147 ATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGA---------GCTTCGACTCTTAGG 197
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGTTGGGAATCTTGAGGCAAAGAGCCATCGATGGAGGCTTGGCTGCTTCGACTCTTAGA 60
Query 198 AGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAGCTGGTGCAAAAGAGATGACA 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGACGCGATTCGCATTGGTTTCTGCTAGGAGCTATGCAGCTGGTGCAAAAGAGATGACA 120
Query 258 GTCAGAGATGCTCTAAATTCTGCAATTGATGAGGAAATGTCTGCTGATCCTAAAGTATTT 317
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GTCAGAGATGCTCTAAATTCTGCAATTGATGAGGAAATGTCTGCAGATCCTAAAGTATTT 180
Query 318 GTCATGGGTGAAGAGGTTGGCCAATATCAAGGTGCCTACAAGATCACTAAAGGCCTTTTG 377
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GTTATGGGTGAAGAGGTTGGTCAATATCAAGGTGCCTACAAGATCACTAAAGGTCTTTTG 240
Query 378 GAGAAATATGGTCCTGAGAGAGTTTACGATACCCCTATTACTGAGGCTGGATTTACTGGA 437
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GAGAAATATGGTCCTGAGAGAGTTTACGATACCCCTATTACCGAGGCTGGATTTACTGGA 300
Query 438 ATTGGAGTTGGTGCTGCCTATGCTGGCTTAAAGCCCGTTGTAGAATTTATGACGTTTAAC 497
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 301 ATTGGAGTTGGTGCTGCCTATGCTGGCTTGAAGCCTGTTGTAGAATTTATGACGTTTAAC 360
Query 498 TTCTCTATGCAGGCAATTGATCATATCATCAATTCCGCTGCAAAGTCAAATTACATGTCT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCTCTATGCAGGCAATTGATCATATCATCAATTCCGCTGCAAAGTCAAATTACATGTCT 420
Query 558 GCTGGACAGATAAATGTACCCATCGTCTTTAGAGGACCCAATGGTGCTGCTGCTGGTGTT 617
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 GCTGGACAGATAAATGTACCCATCGTCTTTAGAGGACCCAATGGTGCGGCTGCTGGTGTT 480
Query 618 GGAGCTCAACATTCTCAGTGCTATGCAGCGTGGTATGCCTCAGTTCCTGGTTTGAAAGTC 677
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 GGGGCTCAACATTCTCAGTGCTATGCAGCGTGGTATGCTTCAGTTCCTGGTTTGAAAGTC 540
Query 678 CTTGCTCCGTATTCAGCTGAAGATGCTCGTGGTCTTCTTAAAGCTGCCATTAGAGACCCT 737
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCGCTCCATATTCAGCTGAAGATGCTCGTGGTCTTCTTAAAGCTGCCATTAGAGACCCT 600
Query 738 GACCCTGTTGTCTTCCTTGAAAACGAGTTACTATATGGTGAATCATTCCCTATTTCAGAA 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GACCCTGTTGTCTTCCTTGAAAACGAGTTACTATATGGTGAATCATTCCCTATTTCAGAA 660
Query 798 GAAGCCCTTGATTCAAGTTTCTGTCTTCCCATAGGCAAAGCCAAGATTGAACGAGAAGGA 857
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAAGCACTTGATTCAAGTTTCTGTCTTCCCATAGGCAAAGCCAAGATTGAACGAGAAGGA 720
Query 858 AAGGACGTAACGATAGTAACTTTCTCGAAGATGGTCGGTTTCGCCCTCAAGGCAGCTGAG 917
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 AAGGATGTGACGATAGTAACTTTCTCGAAGATGGTCGGTTTTGCCCTCAAGGCAGCTGAG 780
Query 918 AAGCTCGCAGAAGAGGGAATAAGTGCTGAGGTAATAAATCTTCGATCAATCCGTCCGCTT 977
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 781 AAGCTCGCAGAAGAGGGAATAAGTGCTGAGGTAATAAATCTTCGTTCTATCCGTCCGCTT 840
Query 978 GACCGAGCCACCATCAATGCTTCAGTGAGGAAAACGAGTAGATTGGTAACAGTTGAAGAA 1037
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GACAGAGCCACCATCAATGCTTCAGTGAGGAAAACGAGTAGATTGGTAACAGTTGAAGAA 900
Query 1038 GGTTTCCCACAACATGGAGTCTGTGCAGAAATTTGTGCGTCGGTTGTAGAAGAGAGCTTT 1097
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 GGTTTCCCTCAACATGGAGTCTGTGCAGAAATCTGTGCGTCGGTTGTAGAAGAGAGCTTT 960
Query 1098 TCGTACTTGGATGCACCGGTCGAGAGGATTGCAGGAGCTGATGTTCCAATGCCGTATGCA 1157
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 961 TCATACTTGGATGCACCGGTGGAGAGGATTGCAGGAGCTGATGTTCCAATGCCTTATGCA 1020
Query 1158 GCTAACCTAGAGAGATTGGCTCTTCCTCAGATAGAGGACATCGTTCGTGCATCAAAGAGA 1217
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1021 GCTAACCTAGAGAGATTGGCTCTTCCTCAGATAGAGGATATCGTTCGAGCATCAAAGAGA 1080
Query 1218 GCTTGTTACAGATCGAAATAA 1238
|||||||||||||||||||||
Sbjct 1081 GCTTGTTACAGATCGAAATAA 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57935262645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5