BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50870.2
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495151 jgi|Araly1|495151|fgenesh2_kg.8__967__AT5G50870.1 739 0.0
> Ahg495151 jgi|Araly1|495151|fgenesh2_kg.8__967__AT5G50870.1
Length=844
Score = 739 bits (400), Expect = 0.0
Identities = 467/497 (94%), Gaps = 14/497 (3%)
Strand=Plus/Plus
Query 101 AAGATGCAAGAAAAGAAGCTGAA-TTGATTCACCAAATACACATAATAAAGTTTCAATCT 159
|||||||||||||||||||| || ||| |||||| | | ||||||||||||||||||
Sbjct 1 AAGATGCAAGAAAAGAAGCTCAATTTG-TTCACC----A-A-ATAATAAAGTTTCAATCT 53
Query 160 GTTTCTTCTTTTAGGGTTTGGGAGATTTTTAATCGGAGATCTC-GAAAAGATGATAGATT 218
||| ||| |||||||||||||||| ||| |||| | |||||| |||||||||||||||
Sbjct 54 -TTT-TTC-TTTAGGGTTTGGGAGAATTTCAATC-G-GATCTCTAAAAAGATGATAGATT 108
Query 219 TCAGTCGAATCCAGAAAGAGCTTCAGGACTGCGAGAGAAACCAGGATTCTTCGGGTATCC 278
|||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 109 TCAGTCGAGTCCAGAAAGAGCTTCAAGATTGCGAGAGAAACCAGGATTCTTCGGGTATCC 168
Query 279 GGGTCTGCCCCAAATCCGATAACCTCACCCGACTCACCGGAACCATTCCTGGTCCAATCG 338
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 GGGTCTGCCCGAAAGCCGATAACCTCACCCGACTCACCGGAACCATTCCTGGTCCAATCG 228
Query 339 GTACTCCTTACGAAGGCGGTACATTTCAGATCGATATCACTATGCCAGATGGGTATCCAT 398
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 229 GTACTCCTTACGAAGGCGGTACTTTTCAGATCGATATCACTATGCCAGAAGGGTATCCAT 288
Query 399 TTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTGGCATCCGAATATTAGTAGCCAAA 458
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 289 TTGAGCCTCCAAAGATGCAGTTTTCAACTAAAGTTTGGCACCCGAATATTAGTAGCCAAA 348
Query 459 GCGGTGCAATATGCTTGGATATCTTGAAAGACCAGTGGAGTCCAGCTCTTACTCTGAAGA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GCGGTGCAATATGCTTGGATATCTTGAAAGACCAGTGGAGTCCAGCTCTTACTCTGAAGA 408
Query 519 CAGCTCTTGTTTCAATTCAGGCTTTACTCTCTGCACCTGAGCCCAAAGACCCTCAAGATG 578
|||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||
Sbjct 409 CAGCTCTTGTTTCAATCCAGGCTTTACTCTCTTCGCCAGAGCCCAAAGACCCTCAAGATG 468
Query 579 CTGTTGTAGCTGAACAG 595
|||||||||||||||||
Sbjct 469 CTGTTGTAGCTGAACAG 485
Score = 496 bits (268), Expect = 2e-139
Identities = 334/365 (92%), Gaps = 8/365 (2%)
Strand=Plus/Plus
Query 628 GTACATGAAGAACTATCAAGTGTTTGTATCAACAGCTCGTTACTGGACTGAAACTTTCGC 687
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GTACATGAAGAACTACCAAGTGTTTGTATCAACAGCTCGTTACTGGACTGAAACTTTCGC 544
Query 688 CAAGAAATCTTCTCTAGAGGAAAAAGTCAAG-AGACTTGTGGAGATGGGTTTTGGAGACG 746
||||| |||||||||||||||||||| ||| | ||| |||||||||||||||||||| |
Sbjct 545 TAAGAACTCTTCTCTAGAGGAAAAAGT-AAGGAAACTCGTGGAGATGGGTTTTGGAGATG 603
Query 747 CTCAAGTTAGGAGTGCAATTGAATCAAGTGGTGGTGATGAGAATCTGGCTCTGGAAAAGC 806
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 604 CTCAGGTTAGGAGTGCAATTGAATCAAGTGGTGGAGATGAGAATCTGGCACTGGAAAAGC 663
Query 807 TCTGTTCTGCTTAGGATCTATCAACTCAAGC-CTCATTGGCGCTAGATATGTTATTTATT 865
||||||||| ||||||||| ||| |||| ||||||| ||||||||||| |||| |||
Sbjct 664 TCTGTTCTGGGTAGGATCTAGCAAA-CAAGGTCTCATTGTCGCTAGATATGATATTAATT 722
Query 866 TGGTTTATAACTCTTATGTGCTATGTTTCTGCTCTTGCCTACTGATAAGAGTGAAACTAC 925
||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||| |
Sbjct 723 TGGTTTATAACTCTTATGTGCTACGTTTCTTCTCTTGCCTGCTGATAAGAGTGAAACTGC 782
Query 926 TTT-ATAAAGATTATTAAATGCAATGCTATATCCATACATGAGATCTTATCTAGTAGATC 984
||| | ||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 783 TTTTAAAAAAATTATTAAATGCAATGCTATATCCATA-A--AGATCTTATCTAGTAGATC 839
Query 985 ATTGA 989
|||||
Sbjct 840 ATTGA 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37665441996
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5