BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50900.1
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949632 jgi|Araly1|949632|scaffold_801519.1 2667 0.0
Ahg948956 jgi|Araly1|948956|scaffold_800843.1 174 2e-42
> Ahg949632 jgi|Araly1|949632|scaffold_801519.1
Length=1708
Score = 2667 bits (1444), Expect = 0.0
Identities = 1625/1713 (95%), Gaps = 9/1713 (1%)
Strand=Plus/Plus
Query 41 tcAGTCAAACCCTAATTCCGATGACGGTACCTAATTCCGACGATGGTGACCGGAGTTTAA 100
||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | |||
Sbjct 1 TCAGTCAAACCCTAATTCCGATGCCGGTACCTAATTCCGACGACGGTGACCGGACTCTAA 60
Query 101 CGGAGGTTATCACCTCTCTTATCGACTCTATACCC-AACCTTCTTAGCTTCAAGTGTAAA 159
||||||||||||| ||||| | |||||||| ||| ||||||| ||||||||||| |||
Sbjct 61 CGGAGGTTATCACTTCTCTCCTTGACTCTAT-CCCTAACCTTCGTAGCTTCAAGTCCAAA 119
Query 160 TGGTCATCAATTCGCGCCAAACTCGCCGATCTCAAAACTCAGCTCTCCGATTTCTCCGAT 219
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGGTCTTCAATTCGCGCCAAACTCGCCGATCTCAAAACTCAGCTCTCCGATTTCTCCGAT 179
Query 220 TTCGCCGGCTCTTCTTCAAACAAACTCGC-CGTAGATCTTCTAGTTTCAGTTCGCGAGAC 278
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 180 TTCGCCGGCTCTTCTTCAAACAAACTCGCTC-TAGATCTTCTCGTTTCAGTTCGCGAGAC 238
Query 279 GCTAAACGACGCCGTTGCCGTTGCGGCGAGGTGTGAAGGACCAGATTTAGCTGAAGGTAA 338
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 GCTAAGCGACGCCGTTGCCGTTGCGGCGAGGTGTGAAGGACCAGATTTAGCTGAAGGAAA 298
Query 339 GCTTAAAACGCAGAGTGAGGTTGATTCAGTCATGGCGAGACTCGATCGTCATGTGAAAGA 398
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 GCTTAAAACGCAGAGCGAGGTTGATTCAGTCATGGCGAGACTTGATCGTCATGTGAAAGA 358
Query 399 TGCTGAGGTTTTGATTAAGAGTGGTCTTCTGATTGATAACGGAATCGTCGTTTCTGGATT 458
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 359 TGCTGAGGTTTTGATTAAGAGTGGTCTTCTGATTGATAACGGAATCGTCGTCTCCGGATT 418
Query 459 TTCGATTTCGTCGAAGAAGGAAGCTGTTAGATTAGAAGCGAGGAATCTAGTGATTAGATT 518
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 419 TTCGATTTCGTCGAAGAAGGAAGCTGTTCGATTAGAAGCGAGGAATTTAGTGATTCGATT 478
Query 519 ACAGATCGGTGGTGTTGAATCGAAGAATTCAGCGATTGATTCGTTGATTGAATTACTTCA 578
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACAGATCGGTGGAGTTGAATCGAAGAATTCAGCGATTGATTCGTTGATTGAATTACTTCA 538
Query 579 GGAAGATGATAAGAACGTGATGATTTGTGTAGCTCAAGGAGTTGTTCCTGTTTTAGTTAG 638
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 539 GGAAGATGATAAGAACGTGATGATTTGTGTTGCTCAAGGAGTTGTTCCTGTTTTGGTTAG 598
Query 639 GTTACTTGATTCGTGTTCTTTAGTGATGAAGGAGAAGACTGTTGCTGTGATTTCTAGAAT 698
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 599 GTTACTTGATTCGTGTTCTTTAGTGATGAAGGAGAAGACTGTTACTGTGATTTCTAGAAT 658
Query 699 CTCTATGGTTGAGAGTAGTAAACACGTGTTAATAGCTGAAGGATTGTCTCTATTGAATCA 758
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 659 CTCTATGGTTGAGAGTAGTAAACATGTGTTAATAGCTGAAGGATTGTCTTTATTGAATCA 718
Query 759 TCTCCTTCGTGTATTGGAGTCAGGAAGTGGTTTTGCTAAAGAGAAAGCTTGTGTTGCTTT 818
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 719 TCTCCTTCGTGTATTGGAGTCAGGAAGTGGTTTTGCTAAAGAGAAAGCTTGTATTGCTTT 778
Query 819 GCAAGCTTTGAGTTTGTCTAAGGAGAACGCGAGAGCTATTGGTTGTAGAGGTGGAATCTC 878
|| || ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 779 ACAGGCGTTGAGTTTGTCGAAGGAGAACGCTAGAGCGATTGGTTGTAGAGGCGGAATCTC 838
Query 879 GTCTTTGTTGGAGATATGTCAAGGTGGGAGTCCTGGTTCTCAGGCTTTTGCTGCTGGTGT 938
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 839 GTCTTTATTGGAGATATGTCAAGGTGGGAGTCCTGGCTCTCAGGCTTTTGCTGCTGGTGT 898
Query 939 GTTGAGGAACTTAGCTTTGTTTGGAGAGACTAAAGAGAATTTCGTTGAGGAAAACGCGAT 998
||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 GTTGAGGAATTTGGCTTTGTTTGTAGAGACTAAAGAGAATTTCGTTGAGGAAAACGCGAT 958
Query 999 TTTCGTGCTTATTAGTATGGTTTCTTCAGGTACTTCTTTGGCTCAAGAGAATGCTGTTGG 1058
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 959 TTTCGTGCTTATTAGTATGGTTTCTTCAGGTACGTCTTTGGCTCAAGAGAATGCTGTTGG 1018
Query 1059 TTGTTTGGCTAATTTAACGAGTGGTGATGAGGATTTGATGATATCTGTTGTTAGAGAAGG 1118
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1019 ATGTTTGGCTAATTTAACGAGTGGAGATGAGGATTTGATGATATCTGTTGTTAGAGAAGG 1078
Query 1119 AGGGATTCAGTGTTTGAAGAGTTTTTGGGATTCTGTTTCTAGTGTTAAGAGTCTTGAGGT 1178
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1079 AGGGATTCAGTGTTTGAAGAGTTTTTGGGATTCTGTTTCTAATGTTAAGAGTCTTGAGGT 1138
Query 1179 TGGAGTTGTGCTTCTGAAGAACTTAGCGTTGTGTCCTATTGTGAGAGAAGTTGTTATATC 1238
||||||||||||| ||||||| ||||| |||||||||||||| ||||| |||||||||||
Sbjct 1139 TGGAGTTGTGCTTTTGAAGAATTTAGCTTTGTGTCCTATTGTTAGAGAGGTTGTTATATC 1198
Query 1239 CGAAGGGTTTATCCCTCGTTTGGTTCCGGTTTTGAGTTGTGGGGTTCTCGGTGTGAGAAT 1298
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1199 CGAAGGATTTATCCCTCGTTTGGTTCCGGTGTTGAGTTGTGGGGTTCTCGGTGTGAGAAT 1258
Query 1299 TGCAGCTGCGGAAGCTGTTTCCTCGCTAGGTTTCAGCTCGAAAAGCCGAAAAGAAATGGG 1358
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1259 CGCAGCTGCAGAAGCTGTTTCTTCGCTAGGTTTCAGCTCGAAAAGCCGAAAAGAATTGGG 1318
Query 1359 TGAAAGTGGATGTATCGTTCCATTGATTGATATGTTAGATGGTAAAGCCATTGAAGAGAA 1418
|||||| ||||| || | |||||||||||||||||||||||||||||| | ||||||||
Sbjct 1319 TGAAAGCGGATGCATTGGTCCATTGATTGATATGTTAGATGGTAAAGCTGTGGAAGAGAA 1378
Query 1419 AGAAGCAGCTTCTAAAGCTCTATCGACGCTT-TTGGTGTGCACGAGTAACAGAAAGAT-T 1476
||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |
Sbjct 1379 AGAAGCAGCTTCTAAAGCTCTATCGAC-CTTATTGGTGTGCACGAGTAATAGAAAGATAT 1437
Query 1477 TTCAAGAAGAGTGACAAGGGTGTAGTCAGTCTAGTTCAGCTCTTGGACCCGAAGATTAAG 1536
|| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1438 TT-AAGAAGAGTCAGAAGGGTGTAGTCAGTCTTGTTCAGCTCTTGGACCCGAAGATTAAG 1496
Query 1537 AAATTGGATAAGCGGTACACAGTCTCGGCGTTGGAACTGCTTGTAACTTCAAAGAAATGC 1596
|||||||||||| ||||||||||| |||||||||| |||||| |||||||||||||||
Sbjct 1497 AAATTGGATAAGATATACACAGTCTCTGCGTTGGAACAGCTTGTTACTTCAAAGAAATGC 1556
Query 1597 AGGAAACAAGTCGTAGCTGCTGGTGCTTGCTTGCATTTGCAAAAGCTTGTGGATATGGAT 1656
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1557 AGGAAACAAGTCGTTGCTGCTGGTGCTTGCTTGCATTTACAAAAGCTTGTGGAGATGGAT 1616
Query 1657 ACCGAAGGAGCTAAGAAACTGGCGGAGAATCTTTCCCGGAGTAAGATTTGGGGCGTCTTT 1716
| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1617 ATCGAAGGAGCTAAGAAACTGGCGGAGAATCTTGCCCGGAGTAAGATTTGGGGGGTCTTT 1676
Query 1717 ACAAGGCCATAAGAGACTGCGCAGGATACGTTT 1749
|||||||||||||||||||||| ||||||||||
Sbjct 1677 ACAAGGCCATAAGAGACTGCGC-GGATACGTTT 1708
> Ahg948956 jgi|Araly1|948956|scaffold_800843.1
Length=439
Score = 174 bits (94), Expect = 2e-42
Identities = 124/138 (90%), Gaps = 4/138 (3%)
Strand=Plus/Plus
Query 348 GCAGAGTGAGGTTGATTCAGTCATGGCGAGACTCGATCGTCATGTGAAAGATGCTGAGGT 407
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 GCAGAGTGAAGTTAACTCAGTCATGGCGAGACTCGATCGTCATGTGAAAGATGCTGAGGT 325
Query 408 TTTGATTA-AGAGTGGTCTTCTG-ATTGATAACGGAATCGTCGTTTCTGGATTTTCGATT 465
|||||||| | ||||||||||| | ||||||||||||||||||| | |||| ||||||
Sbjct 326 TTTGATTACA-AGTGGTCTTCTTCAA-GATAACGGAATCGTCGTTTTTCGATTCTCGATT 383
Query 466 TCGTCGAAGAAGGAAGCT 483
||||| ||||| ||||||
Sbjct 384 TCGTCTAAGAAAGAAGCT 401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74237887505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5