BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50915.1
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495154 jgi|Araly1|495154|fgenesh2_kg.8__970__AT5G50915.1 1435 0.0
> Ahg495154 jgi|Araly1|495154|fgenesh2_kg.8__970__AT5G50915.1
Length=1108
Score = 1435 bits (777), Expect = 0.0
Identities = 972/1058 (92%), Gaps = 46/1058 (4%)
Strand=Plus/Plus
Query 6 GAAAAAACACTATCTCTATCGACAAAGATAAGAGAACTCAGAAGCTTCTACTCTTAAAAT 65
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAAAACACTCTCCCTATCGACAAAGATAAGAGAACTCAGAAGCTTCTACTCTTAAAAT 60
Query 66 GGCAACTTTCTCTTATTTCCAAAACTACCCTCATTCCCTTCTTGATCCTCTTCTCTTCCC 125
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 GGCAACTTTCTCTTATTTCCAAAACTACCCTCACTCCCTTCTTGATCCTCTTCTCTTCCC 120
Query 126 TACACCTCACTCCTCCATTAATCTCACTAGTTTCATCGATCAAAACCATCTCTATCCACT 185
||||||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||
Sbjct 121 AACACCTCACTCCTCCATTAATATCACTGGTTTCATCGATCAAAATCATCTCCATCCACT 180
Query 186 ACCAAACATTTCCACAGTTGAAGACA-----TTT---CC-TTTC-T--TGAATATAATGT 233
|||||||||||||||||||||||||| ||| || |||| | ||||||||||||
Sbjct 181 ACCAAACATTTCCACAGTTGAAGACATTTCCTTTAACCCATTTCTTGATGAATATAATGT 240
Query 234 TGACAAAACTGAAAACTCTGG-TTCAGAGAAACTGGCCAACACAACCAAAACAGCAACCA 292
||||| ||| ||||||||||| || |||||||| ||| |||||||||||||| |||||||
Sbjct 241 TGACAGAACCGAAAACTCTGGCTT-AGAGAAACAGGCTAACACAACCAAAACCGCAACCA 299
Query 293 CCGGTTCTTCTTCCTGCGACCAGCTCAGCCACGGACCATCAGCCATCACCAACACCGGAA 352
|| ||||||| |||| | | | | ||||||| ||||||||||||||| ||||||||
Sbjct 300 CCCGTTCTTCATCCT--G--C-G---A-CCACGGATCATCAGCCATCACCACCACCGGAA 350
Query 353 AAACCCGTGGGAGGAAGGCCAGAAACAG-TAATAACTCCaaggaaggagtagagggaaga 411
||| ||||||||||||||||||||| | | ||| ||||||||||||||||||||||||
Sbjct 351 AAAACCGTGGGAGGAAGGCCAGAAA-TGTTTCTAAGTCCAAGGAAGGAGTAGAGGGAAGA 409
Query 412 aaaagcaaaaaacagaagagaggaagcaaagaagagCCTCCAACAGATTACATTCACGTT 471
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 410 AAAAGCAAAAAACAGAAGAGAGGAAGCAAAGAAGAGCCTCCAAAAGATTACATTCACGTT 469
Query 472 CGAGCTAGAAGAGGCCAAGCTACTGATAGCCACAGCCTTGCTGAGAGGGTGAGAAGGGAA 531
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 470 CGAGCTAGAAGAGGCCAAGCTACTGATAGCCACAGCCTTGCCGAGAGGGTGAGAAGGGAA 529
Query 532 AAGATAAGTGAGCGGATGAGGACTCTGCAAAACCTTGTTCCGGGCTGTGATAAGGTAACA 591
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 530 AAGATAAGTGAGAGGATGAGAACTCTGCAAAACCTTGTTCCGGGCTGTGATAAGGTAACA 589
Query 592 GGGAAGGCCCTCATGTTGGATGAGATTATAAATTATGTCCAGACCTTGCAGACTCAAGTT 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GGGAAGGCCCTCATGTTGGATGAGATTATAAATTATGTCCAGACCTTGCAGACTCAAGTT 649
Query 652 GAGTTTCTCTCAATGAAGCTAACTTCTATAAGTCCGGTGGTCTATGACTTTGGCTCCGAC 711
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 650 GAGTTTCTCTCGATGAAGCTAACTTCTATAAGTCCGGTGGTCTATGACTTTGGTTCCGAC 709
Query 712 CTTGATGGCCTCATACTTCA-ATCTGAGATGGGTTCTCCAGAAGTAGGAACGTCTTTTAC 770
|||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 710 CTTGATGGCCTCATACTT-AGATCTGAGATGGGATCTCCAGAAGTAGGAACGTCTTTTAC 768
Query 771 CAATGCAATGCCAACAACTACTCCTATCTTTCCTTCACTATTGGATAATTCTGTAGTTCC 830
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 769 CAATACAATGCCAACAACTACTTCTATCTTTCCTTCACTATTGGATAATTCT--A-T--- 822
Query 831 CACACATGCACAAGTTCAGGAAGAGGGAGAAGAAAGAGAGAACTTTGTAGACAGAAGTGG 890
| | |||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 823 -A-----G------TTCAGGAAGAGGGAGAAGGAAGAGAGAAGTTTGTAGACAGAAGTGG 870
Query 891 GTTCAACAACAACAACTTCTGTTCTTTCCCTTGATAAAATTACATGTCGACACAAACACA 950
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 871 GTTCAACAACAACAACTTCTGTTCTTTCCCTTGATAAA-TTACATGTCGACACAAACACA 929
Query 951 AAAGCCTGCTTTCGTTGATTTAATCTCCTCCCATTTGCACGGAGGGAATAAAATCTACGT 1010
||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||
Sbjct 930 AAAGCCTGCTTTCGTTGATTTCATTTCCTCCCATATGCACGGAGGGAATAAAATCTACGT 989
Query 1011 AAACCAGGTTTTGTAAAAGTGGATGTACTTATTTGTTC 1048
|||||||| | ||||||||||| ||||||||||||||
Sbjct 990 AAACCAGGGGTCGTAAAAGTGGACGTACTTATTTGTTC 1027
Score = 69.4 bits (37), Expect = 6e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1191 GCAAATTCGATGGAGGAAAGAAAGACATATAAACTAAGAA 1230
|||||||||||||||||||||||||||||||||| |||||
Sbjct 1069 GCAAATTCGATGGAGGAAAGAAAGACATATAAACGAAGAA 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50322250440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5