BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G50930.1

Length=852
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg331481 jgi|Araly1|331481|fgenesh1_pm.C_scaffold_8000824           754    0.0  


> Ahg331481 jgi|Araly1|331481|fgenesh1_pm.C_scaffold_8000824
Length=555

 Score =  754 bits (408),  Expect = 0.0
 Identities = 450/470 (96%), Gaps = 3/470 (1%)
 Strand=Plus/Plus

Query  262  ACACAGGCGAAG-AAACCTAGCTATTGCTTCGCCATGGACGTCGGAGGAGAAGACATAAG  320
            |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  87   ACACAGGCGAAGAAAACCTAGCTCTTGCTTCGCCATGGACGTCGGAGGAGAAGACATAAG  146

Query  321  CGATCTCCAGGTAGACCAAATCGTTGAAGAATATTCTATGGACGATCTCATTAGAGACCG  380
            ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct  147  CGATCTCCAGGTAGACCAAATCGTTGAAGAAGATTCCATGGATGATCTCATTAGAGACCG  206

Query  381  ATTCAGACTCTCCGCGATCTCTATCGCCGAAGCCGAGGCGAAGAAAAATGGAATGGAAAT  440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  207  ATTCAGACTCTCCGCGATCTCTATCGCCGAAGCCGAGGCGAAGAAAAATGGAATGGAAAT  266

Query  441  AGGTGGACCTGTTGTGGCATGTGTGGCAGATTTAGCCTTCAAATATGCAGAAAACGTTGC  500
            ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct  267  AGGAGGACCTGTTGTGGCATGTGTGGCGGATTTAGCCTTCAAATATGCAGAAAATGTTGC  326

Query  501  AAAGGATC-TTGAACTATTCGCTCATCATGCTGGACGCAAAGTTGTGAACATGGACGATG  559
            |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  327  AAAGGA-CGTTGAACTATTTGCTCATCATGCTGGACGCAAAGTTGTGAACATGGACGATG  385

Query  560  TTGTTCTCTCCGCGCATAGAAACGATAACTTAGCAGCATCTTTGAGGTCACTATGCAATG  619
            ||||||||||||| |||||||||||||||||||| || |||||||||||| | |||||||
Sbjct  386  TTGTTCTCTCCGCTCATAGAAACGATAACTTAGCTGCGTCTTTGAGGTCATTGTGCAATG  445

Query  620  AGCTAAAGGCAAAGGAGCCACAATCTGAGAGGAAACGCAAGAAAGGATCAGCCAAGAAAG  679
            || |||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  446  AGTTAAAGGCAAAAGAGCCACAATCGGATAGGAAACGCAAGAAAGGATCAGCCAAGAAAG  505

Query  680  AAGACAAAGCCAGTAGTAGCAATGCCGTTCGCATCACGACCGATCTGTAA  729
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  506  AAGACAAAGCCAGTAGTAGCAATGCCGTTCGCATCACGACCGATCTGTAA  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31527652359


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5