BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50940.1
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331482 jgi|Araly1|331482|fgenesh1_pm.C_scaffold_8000825 553 1e-156
> Ahg331482 jgi|Araly1|331482|fgenesh1_pm.C_scaffold_8000825
Length=951
Score = 553 bits (299), Expect = 1e-156
Identities = 553/665 (83%), Gaps = 59/665 (9%)
Strand=Plus/Plus
Query 402 TTACATCCTTAAATCTCCAACTTACAGCCCTACCTCTCCTAGTTACAGCCCTACCTCTCC 461
||||| || || ||||| | |||||||||||| |||||||||||||||||| ||||||
Sbjct 303 TTACAGCCCTACCTCTCCTAGTTACAGCCCTACTTCTCCTAGTTACAGCCCTGTCTCTCC 362
Query 462 TAG-TTACAGGC-CTAACTCTTCT-AGTGACAGCCCTGA-CTCTCA-T-AGTTACAGCCC 515
| | | ||| || ||| |||| || | || | ||||| | |||| | | || |||||||
Sbjct 363 T-GATCACA-GCACTACCTCTCCTCAATG-CTGCCCT-ACCTCT-ACTCAG-CACAGCCC 416
Query 516 TATCTTGAGCTCTCCTCCTGAAGATTATGGTTATGGTCCTGACG-ACATTGAAGCTGGAA 574
||||||||||||||||||||||||| |||||||||||||||| | |||| |||||| |||
Sbjct 417 TATCTTGAGCTCTCCTCCTGAAGATGATGGTTATGGTCCTGA-GCACATGGAAGCT-GAA 474
Query 575 AA-ATGA-AAACTGATCAACTCAAGGAAATTGGGGATGGA-AGTAGCCATGTGGATGGTA 631
|| | || || |||||| |||| ||| |||||||||||| | | ||||||||||||||
Sbjct 475 AACAAGACCAA-TGATCATCTCACGGAGATTGGGGATGGATACT-TCCATGTGGATGGTA 532
Query 632 GAAATTA-CCACAAGGCTGAGACCACTCGCACAATTCATGTCTCATGTCCAAAGGTGGAT 690
||||||| || || |||||| |||||||||||||||||||| ||||| | ||||| | |
Sbjct 533 GAAATTACCCGGAA-GCTGAGGCCACTCGCACAATTCATGTCCCATGTTCTAAGGTAGCT 591
Query 691 CTACTGGTTGGTGCTGCGGCGACTTTACGGTTTCTTCAGCACAACCTTTGTGCTCA-AAT 749
||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 592 CTACTGGTTGGTGCTGCAGCGACTTTACGGTTTCTTCAGCACAACCTTTGTGCT-AGAAT 650
Query 750 CCGTATTTTGAAGGATTCAGAGGTTGATTTGAAGTCTGCACAAAGACCAGTGGAATTAAC 809
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 651 CCGTATTTTAAAGGATTCAGACGTTGATTTGAAGTCTGCACAAAGACCAGTGGAATTAAC 710
Query 810 TGGAACTGTTTTACAGATAGAGTTTACTCAGCAGCTTATCGAGTCTGTTTTAGCAGAG-- 867
|||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct 711 TGGAACTGTTTTACAGATCGAGTTTACGCAGCAGCTTATCGACTCTGTCCTAGCAGAGTC 770
Query 868 -GAGAA-T-------CA-TGAT----G-A-AA-C--------CCA-TGGAAGAGGAAAG- 900
||||| | || | || | | || | ||| ||||||||||||
Sbjct 771 TGAGAAATTTGGTTACAATAATTTCAGGAGAATCATGATTAACCAATGGAAGAGGAAAAA 830
Query 901 --TAAGAAATCATCTTCTCAGAAAGATTGTGGAGCTCTTACTAAGTAAGTCCCCATGCCC 958
||||||| ||||||||||||||||||||| |||||||| |||| |||| | |||||
Sbjct 831 ACTAAGAAACCATCTTCTCAGAAAGATTGTGAAGCTCTTATTAAGCAAGTTC--ATGCCG 888
Query 959 AGTCTGAACATCCCACGTGTGATAGCTGCAACCTCTCCAAGGATATGAAGTTTTTCATGT 1018
||| |||| |||||||||||||| || ||||||||||||||||||||||||| |||| ||
Sbjct 889 AGTATGAATATCCCACGTGTGAT-GCAGCAACCTCTCCAAGGATATGAAGTTGTTCAAGT 947
Query 1019 GTTGA 1023
||||
Sbjct 948 -TTGA 951
Score = 207 bits (112), Expect = 1e-52
Identities = 128/135 (95%), Gaps = 3/135 (2%)
Strand=Plus/Plus
Query 88 ATGTCACAATCTGACTCTTCTCCGACGAAGAAACAGAAGCTGGAGGATGGTTTAGGTAAA 147
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGTCACAATCTGGCTCTTCTCCGACGAAGAAACAGAAGCTGGATGATGGTTTAGGTAAA 60
Query 148 GGAAAATCTCAGAACGAGATTGGTGCTGTAGGGATTCGAGAAGAGAAAGATAATATTGAA 207
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GGAAAATCTCAGAACGAGATTGGTGCTGTAGGGATTCGAGAAGAGAAAGATAAT---GAA 117
Query 208 GTTGAGAATGCTAAG 222
| ||||||||| |||
Sbjct 118 GCTGAGAATGCGAAG 132
Score = 95.3 bits (51), Expect = 8e-19
Identities = 53/54 (98%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 337 CATGCACATTACGACCCTTATGGTTATGGTGGTTCTCGTTTTGGAACTGGATCC 390
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 207 CATGCACATTACGACCCTTATGGTTATGGTGGTTCTCCTTTTGGAACTGGATCC 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41020258692
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5