BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50960.1
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949638 jgi|Araly1|949638|scaffold_801525.1 1779 0.0
Ahg927157 jgi|Araly1|927157|scaffold_202718.1 1101 0.0
> Ahg949638 jgi|Araly1|949638|scaffold_801525.1
Length=1099
Score = 1779 bits (963), Expect = 0.0
Identities = 1049/1092 (96%), Gaps = 0/1092 (0%)
Strand=Plus/Plus
Query 81 AGAAGTCTCAAGTCGACGATATGGAGAACGGAGACATTCCAGAGGACGCTAACGAGCATT 140
|||| || |||||||||||||||||||||||||| ||||| ||| |||| ||||||||||
Sbjct 1 AGAAATCACAAGTCGACGATATGGAGAACGGAGATATTCCTGAGAACGCCAACGAGCATT 60
Query 141 GCCCAGGTCCTCAATCAGAATCTGCTGGAAAATCAGATTCTTGTGCTGGCTGCCCTAATC 200
|||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||
Sbjct 61 GCCCAGGTCCTCAATCAGAAACTGCTGGAAAGTCAGATTCTTGTGCTGGTTGCCCTAATC 120
Query 201 AGGAAGCTTGTGCTACTGCTCCTAAAGGACCTGACCCAGATTTGGTTGCCATAGCAGAGA 260
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 121 AGGAAGCTTGTGCCACTGCTCCTAAAGGACCTGACCCAGATTTGGTTGCCATTGCGGAGA 180
Query 261 GGATGAGCACTGTTAAGCACAAGATTCTGGTTTTGTCTGGCAAAGGTGGAGTTGGTAAGA 320
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 GAATGAGCACTGTTAAGCACAAGATTCTGGTTTTGTCTGGCAAGGGTGGAGTTGGTAAGA 240
Query 321 GTACTTTCTCAGCTCAGCTCTCGTTTGCCCTTGCGGGCATGGATCATCAAGTAGGTCTGA 380
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 241 GTACTTTCTCAGCTCAGCTTTCGTTTGCTCTGGCGGGCATGGATCATCAAGTAGGTCTGA 300
Query 381 TGGACATTGATATATGCGGTCCAAGCATCCCAAAAATGTTAGGACTTGAAGGGCAAGAGA 440
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 TGGACATTGATATATGCGGTCCAAGCATCCCAAAAATGTTAGGCCTTGAAGGGCAAGAGA 360
Query 441 TTCACCAGAGTAACCTTGGATGGTCTCCGGTTTATGTGGAAGACAACCTTGGTGTCATGT 500
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 TTCACCAGAGTAACCTTGGATGGTCTCCGGTTTATGTGGAAGATAACCTTGGTGTCATGT 420
Query 501 CCATAGGTTTCATGCTCCCTAACTCTGATGAAGCTGTGATCTGGAGAGGGCCACGCAAGA 560
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 421 CCATAGGTTTCATGCTCCCTAACTCTGATGACGCTGTGATCTGGAGAGGTCCACGCAAGA 480
Query 561 ATGGTCTCATCAAGCAGTTCTTAAAAGACGTCTACTGGGGAGAGATTGATTACCTTGTTG 620
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 481 ATGGGCTCATCAAACAGTTCTTGAAAGACGTCTACTGGGGAGAGATTGATTACCTCGTTG 540
Query 621 TTGATGCCCCACCAGGAACCTCAGATGAACACATCTCCATCGTCCAGTACCTTCTACCCA 680
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 TTGATGCTCCACCAGGAACCTCAGATGAACACATCTCAATCGTCCAGTACCTTCTACCCA 600
Query 681 CGGGGATCGACGGTGCCATCATTGTCACGACACCGCAGGAAGTCTCCTTGATTGATGTCA 740
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 CGGGGATTGACGGTGCCATCATTGTCACGACACCACAGGAAGTCTCCTTGATTGATGTCA 660
Query 741 GAAAAGAAGTGAGCTTTTGCAAGAAAGTTGGAGTCCCGGTGCTAGGAGTAGTAGAGAACA 800
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 GAAAAGAAGTGAGCTTTTGCAAGAAAGTTGGAGTCCCCGTGCTAGGAGTAGTAGAGAACA 720
Query 801 TGAGTGGTTTATCTCAACCGTTGAAGGATGTCAAGTTCATGAAGCTGGCGACAGAGACCG 860
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGAGTGGTTTGTCTCAACCGTTGAAGGATGTCAAGTTCATGAAGCTGGCGACAGAGACCG 780
Query 861 GCTCCTCCATTAACGTGACTGAAGACGTAATCGCTTGCTTAAGAAAAAACGCACCAGAGC 920
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 781 GCTCCTCCATTAACGTGACCGAAGACGTAATCGCTTGCTTAAGAGAAAACGCACCAGAGC 840
Query 921 TTCTCGACATCGTGGCTTGTAGCGAAGTGTTTGACAGCAGCGGAGGCGGTGCAGAAAGAA 980
||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 841 TTCTCAACATCGTGGCTTGCAGCGAAGTGTTTGACAGCAGCGGAGGTGGTGCAGAAAGAA 900
Query 981 TGTGTCGGGAAATGGGAGTACCGTTTCTTGGGAAAGTTCCTATGGATCCACAACTTTGCA 1040
||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||
Sbjct 901 TGTGTCGGGAAATGGGAGTACCGTTTCTTGGGAAAGTTCCTTTGGATCCGCAGCTTTGCA 960
Query 1041 AAGCAGCTGAACAAGGTAAGTCATGCTTTGAGGATAACAAGTGTTTAATAAGCGCACCTG 1100
|||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 961 AAGCAGCTGAACAAGGTAAGTCATGCTTTGAGGATACCGAGTGTTTAATCAGCGCACCTG 1020
Query 1101 CGCTTAAAAGCATCATACAGAAAGTCGTTCCTTCAACAGTGATGACCGAGTgaagaataa 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1021 CGCTTAAAAGCATCATACAGAAAGTCGTTCCTTCAACAGTGATGACCGAGTGAAGAAGAA 1080
Query 1161 gaagaagaagaa 1172
||||||||||||
Sbjct 1081 GAAGAAGAAGAA 1092
> Ahg927157 jgi|Araly1|927157|scaffold_202718.1
Length=1108
Score = 1101 bits (596), Expect = 0.0
Identities = 885/1023 (87%), Gaps = 26/1023 (3%)
Strand=Plus/Plus
Query 122 GAGGACGCTAACGAGCATTGCCCAGGTCCTC-AATCAGAATCTGCTGGAAAATCAGATTC 180
||| |||| |||||| ||||||||||||| | |||| ||| |||||||||| ||||||||
Sbjct 24 GAGAACGCGAACGAGAATTGCCCAGGTCC-CGAATCCGAAACTGCTGGAAAGTCAGATTC 82
Query 181 TTGTGCTGGCTGCCCTAATCAGGAAGCTTGTGCTACTGCTCCTAAAGGACCTGACCCAGA 240
||| || || ||||||||||||||||| ||| | ||||||||||| ||||||||||||||
Sbjct 83 TTGCGCAGGTTGCCCTAATCAGGAAGCATGTTCCACTGCTCCTAAGGGACCTGACCCAGA 142
Query 241 TTTGGTTGCCATAGCAGAGAGGATGAGC-ACTGTTAAGCACAAGATTCTGGTTTTG-TC- 297
||||||||| ||||| || || ||| || || || |||||||||||||||| |||| ||
Sbjct 143 TTTGGTTGCTATAGCTGAAAGAATG-GCAACCGTGAAGCACAAGATTCTGG-TTTGCTCA 200
Query 298 TGGCAAAGGTGGAGTTGGTAAGAGTACTTTCTCAGCTCAGCTCTCGTTTGCCCTTGCGGG 357
| |||||||||| ||||||||||| ||||||||| ||||||| ||||||||||| || ||
Sbjct 201 T-GCAAAGGTGGTGTTGGTAAGAGCACTTTCTCAACTCAGCTTTCGTTTGCCCTAGCTGG 259
Query 358 CATGGATCATCAAGTAGGTCTGATGGACATTGATATATGCGGTCCAAGCATCCCAAAAAT 417
||||| |||||||||||| || |||||||| ||||||||||| ||||||||||| | |||
Sbjct 260 CATGGTTCATCAAGTAGGCCTCATGGACATAGATATATGCGGCCCAAGCATCCCTACAAT 319
Query 418 GTTAGGACTTGAAGGGCAAGAGATTCACCAGAGTAACCTT-GGATGGTCTCCGGTTTATG 476
| |||| || ||||||| |||||| ||||||| || ||| |||||||| ||||||||||
Sbjct 320 GCTAGGCCTCCAAGGGCACGAGATTTACCAGAGCAA-CTTGGGATGGTCACCGGTTTATG 378
Query 477 TGGAAGACAACCTTGGTGTCATGTCCATAGGTTTCAT-G--C-TCCCT---AACTCTGAT 529
| ||||||||||| | ||||||||||||||||||||| | | |||| || ||||||
Sbjct 379 TTGAAGACAACCTCGCTGTCATGTCCATAGGTTTCATGGTTCACCCCTCCGAA-TCTGAT 437
Query 530 GAAG-CTGTGATCTGGAGAGGGCCACGCAAGAATGGTCTCATCAAGCAGTTCTTAAAAGA 588
| || ||| ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 438 G-AGCCTGCCATCTGGAGAGGTCCACGCAAGAACGGTCTCATCAAACAGTTTTTAAAAGA 496
Query 589 CGTCTACTGGGGAGAGATTGATTACCTTGTTGTTGATGCCCCACCAGGAACCTCAGATGA 648
||| |||||||||||||| |||| |||||| |||||| ||||||||||||||||||| ||
Sbjct 497 CGTTTACTGGGGAGAGATCGATTTCCTTGTGGTTGATTCCCCACCAGGAACCTCAGACGA 556
Query 649 ACACATCTCCATCGTCCAGTACCTT-CTACCCACGGGGATCGACGGTGCCATCATTGTCA 707
| ||||| |||||||||||| |||| | || |||||||||||||||||| ||||||||||
Sbjct 557 AAACATCACCATCGTCCAGTCCCTTGC-ACACACGGGGATCGACGGTGCTATCATTGTCA 615
Query 708 CGACACCGCAGGAAGTCTCCTTGATTGATGTCAGAAAAGAAGTGAGCTTTTGCAAGAAAG 767
| || || || ||| |||||||||| ||||||||||||| ||| | |||||||||||||
Sbjct 616 CCACCCCTCAAGAAATCTCCTTGATAGATGTCAGAAAAGGAGTCAACTTTTGCAAGAAAA 675
Query 768 TTGGAGTCCCGGTGCTAGGAGTAGTAGAGAACATGAGTGGTTTATCTCAACCGTTGAAGG 827
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 676 TTGGAGTCCCTGTGCTAGGAGTTGTAGAGAACATGAGCGGTTTATCTCAACCGTTGACGG 735
Query 828 ATGTCAAGTTCATGAAGCTGGCGACAGAGACCGGCTCCTCCATTAACGTGACTGAAGACG 887
|| |||||||||||||||||| || || |||||||||||||| ||||||| |||||
Sbjct 736 ATATCAAGTTCATGAAGCTGGTAACTGAAACCGGCTCCTCCATCGACGTGACCCAAGACA 795
Query 888 TAATCGCTTGCTTAAGAAAAAACGCACCAGAGCTTCTCGACATCGTGGCTTGTAG-CGAA 946
| ||| ||||| ||||| | || || |||||||||||| | |||||||||| || | ||
Sbjct 796 TGATCTCTTGCATAAGAGATAATGCTCCAGAGCTTCTCAATGTCGTGGCTTGCAGTC-AA 854
Query 947 GTGTTTGACAGCAGCGGAGGCGGTGCAGAAAGAATGTGTCGGGAAATGGGAGTACCGTTT 1006
|| |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 855 GTTTTTGACAGCAGCGGAGGCGGTGCAGAGAGAATGTGTCAGGAAATGGGAGTGCCGTTT 914
Query 1007 CTTGGGAAAGTTCCTATGGATCCACAACTTTGCAAAGCAGCTGAACAAGGTAAGTCATGC 1066
||||||||||||||| |||||||||| ||||||| |||||| || |||||||||||||||
Sbjct 915 CTTGGGAAAGTTCCTTTGGATCCACAGCTTTGCAGAGCAGCCGAGCAAGGTAAGTCATGC 974
Query 1067 TTTGAGGATAACAAGTGTT-TAATAAGCGCACCTGCGCTTAAAAGCATCATACAGAAAGT 1125
||||||||||||||||||| | || | ||||| |||||||| ||||||||| | |||||
Sbjct 975 TTTGAGGATAACAAGTGTTCTGTTA-GTGCACCCGCGCTTAAGAGCATCATAGAAAAAGT 1033
Query 1126 CGT 1128
|||
Sbjct 1034 CGT 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51809044203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5