BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G50960.1 Length=1384 Score E Sequences producing significant alignments: (Bits) Value Ahg949638 jgi|Araly1|949638|scaffold_801525.1 1779 0.0 Ahg927157 jgi|Araly1|927157|scaffold_202718.1 1101 0.0 > Ahg949638 jgi|Araly1|949638|scaffold_801525.1 Length=1099 Score = 1779 bits (963), Expect = 0.0 Identities = 1049/1092 (96%), Gaps = 0/1092 (0%) Strand=Plus/Plus Query 81 AGAAGTCTCAAGTCGACGATATGGAGAACGGAGACATTCCAGAGGACGCTAACGAGCATT 140 |||| || |||||||||||||||||||||||||| ||||| ||| |||| |||||||||| Sbjct 1 AGAAATCACAAGTCGACGATATGGAGAACGGAGATATTCCTGAGAACGCCAACGAGCATT 60 Query 141 GCCCAGGTCCTCAATCAGAATCTGCTGGAAAATCAGATTCTTGTGCTGGCTGCCCTAATC 200 |||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| Sbjct 61 GCCCAGGTCCTCAATCAGAAACTGCTGGAAAGTCAGATTCTTGTGCTGGTTGCCCTAATC 120 Query 201 AGGAAGCTTGTGCTACTGCTCCTAAAGGACCTGACCCAGATTTGGTTGCCATAGCAGAGA 260 ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| Sbjct 121 AGGAAGCTTGTGCCACTGCTCCTAAAGGACCTGACCCAGATTTGGTTGCCATTGCGGAGA 180 Query 261 GGATGAGCACTGTTAAGCACAAGATTCTGGTTTTGTCTGGCAAAGGTGGAGTTGGTAAGA 320 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 181 GAATGAGCACTGTTAAGCACAAGATTCTGGTTTTGTCTGGCAAGGGTGGAGTTGGTAAGA 240 Query 321 GTACTTTCTCAGCTCAGCTCTCGTTTGCCCTTGCGGGCATGGATCATCAAGTAGGTCTGA 380 ||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| Sbjct 241 GTACTTTCTCAGCTCAGCTTTCGTTTGCTCTGGCGGGCATGGATCATCAAGTAGGTCTGA 300 Query 381 TGGACATTGATATATGCGGTCCAAGCATCCCAAAAATGTTAGGACTTGAAGGGCAAGAGA 440 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 301 TGGACATTGATATATGCGGTCCAAGCATCCCAAAAATGTTAGGCCTTGAAGGGCAAGAGA 360 Query 441 TTCACCAGAGTAACCTTGGATGGTCTCCGGTTTATGTGGAAGACAACCTTGGTGTCATGT 500 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 361 TTCACCAGAGTAACCTTGGATGGTCTCCGGTTTATGTGGAAGATAACCTTGGTGTCATGT 420 Query 501 CCATAGGTTTCATGCTCCCTAACTCTGATGAAGCTGTGATCTGGAGAGGGCCACGCAAGA 560 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 421 CCATAGGTTTCATGCTCCCTAACTCTGATGACGCTGTGATCTGGAGAGGTCCACGCAAGA 480 Query 561 ATGGTCTCATCAAGCAGTTCTTAAAAGACGTCTACTGGGGAGAGATTGATTACCTTGTTG 620 |||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 481 ATGGGCTCATCAAACAGTTCTTGAAAGACGTCTACTGGGGAGAGATTGATTACCTCGTTG 540 Query 621 TTGATGCCCCACCAGGAACCTCAGATGAACACATCTCCATCGTCCAGTACCTTCTACCCA 680 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 541 TTGATGCTCCACCAGGAACCTCAGATGAACACATCTCAATCGTCCAGTACCTTCTACCCA 600 Query 681 CGGGGATCGACGGTGCCATCATTGTCACGACACCGCAGGAAGTCTCCTTGATTGATGTCA 740 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 601 CGGGGATTGACGGTGCCATCATTGTCACGACACCACAGGAAGTCTCCTTGATTGATGTCA 660 Query 741 GAAAAGAAGTGAGCTTTTGCAAGAAAGTTGGAGTCCCGGTGCTAGGAGTAGTAGAGAACA 800 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 661 GAAAAGAAGTGAGCTTTTGCAAGAAAGTTGGAGTCCCCGTGCTAGGAGTAGTAGAGAACA 720 Query 801 TGAGTGGTTTATCTCAACCGTTGAAGGATGTCAAGTTCATGAAGCTGGCGACAGAGACCG 860 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TGAGTGGTTTGTCTCAACCGTTGAAGGATGTCAAGTTCATGAAGCTGGCGACAGAGACCG 780 Query 861 GCTCCTCCATTAACGTGACTGAAGACGTAATCGCTTGCTTAAGAAAAAACGCACCAGAGC 920 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 781 GCTCCTCCATTAACGTGACCGAAGACGTAATCGCTTGCTTAAGAGAAAACGCACCAGAGC 840 Query 921 TTCTCGACATCGTGGCTTGTAGCGAAGTGTTTGACAGCAGCGGAGGCGGTGCAGAAAGAA 980 ||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 841 TTCTCAACATCGTGGCTTGCAGCGAAGTGTTTGACAGCAGCGGAGGTGGTGCAGAAAGAA 900 Query 981 TGTGTCGGGAAATGGGAGTACCGTTTCTTGGGAAAGTTCCTATGGATCCACAACTTTGCA 1040 ||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| Sbjct 901 TGTGTCGGGAAATGGGAGTACCGTTTCTTGGGAAAGTTCCTTTGGATCCGCAGCTTTGCA 960 Query 1041 AAGCAGCTGAACAAGGTAAGTCATGCTTTGAGGATAACAAGTGTTTAATAAGCGCACCTG 1100 |||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| Sbjct 961 AAGCAGCTGAACAAGGTAAGTCATGCTTTGAGGATACCGAGTGTTTAATCAGCGCACCTG 1020 Query 1101 CGCTTAAAAGCATCATACAGAAAGTCGTTCCTTCAACAGTGATGACCGAGTgaagaataa 1160 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1021 CGCTTAAAAGCATCATACAGAAAGTCGTTCCTTCAACAGTGATGACCGAGTGAAGAAGAA 1080 Query 1161 gaagaagaagaa 1172 |||||||||||| Sbjct 1081 GAAGAAGAAGAA 1092 > Ahg927157 jgi|Araly1|927157|scaffold_202718.1 Length=1108 Score = 1101 bits (596), Expect = 0.0 Identities = 885/1023 (87%), Gaps = 26/1023 (3%) Strand=Plus/Plus Query 122 GAGGACGCTAACGAGCATTGCCCAGGTCCTC-AATCAGAATCTGCTGGAAAATCAGATTC 180 ||| |||| |||||| ||||||||||||| | |||| ||| |||||||||| |||||||| Sbjct 24 GAGAACGCGAACGAGAATTGCCCAGGTCC-CGAATCCGAAACTGCTGGAAAGTCAGATTC 82 Query 181 TTGTGCTGGCTGCCCTAATCAGGAAGCTTGTGCTACTGCTCCTAAAGGACCTGACCCAGA 240 ||| || || ||||||||||||||||| ||| | ||||||||||| |||||||||||||| Sbjct 83 TTGCGCAGGTTGCCCTAATCAGGAAGCATGTTCCACTGCTCCTAAGGGACCTGACCCAGA 142 Query 241 TTTGGTTGCCATAGCAGAGAGGATGAGC-ACTGTTAAGCACAAGATTCTGGTTTTG-TC- 297 ||||||||| ||||| || || ||| || || || |||||||||||||||| |||| || Sbjct 143 TTTGGTTGCTATAGCTGAAAGAATG-GCAACCGTGAAGCACAAGATTCTGG-TTTGCTCA 200 Query 298 TGGCAAAGGTGGAGTTGGTAAGAGTACTTTCTCAGCTCAGCTCTCGTTTGCCCTTGCGGG 357 | |||||||||| ||||||||||| ||||||||| ||||||| ||||||||||| || || Sbjct 201 T-GCAAAGGTGGTGTTGGTAAGAGCACTTTCTCAACTCAGCTTTCGTTTGCCCTAGCTGG 259 Query 358 CATGGATCATCAAGTAGGTCTGATGGACATTGATATATGCGGTCCAAGCATCCCAAAAAT 417 ||||| |||||||||||| || |||||||| ||||||||||| ||||||||||| | ||| Sbjct 260 CATGGTTCATCAAGTAGGCCTCATGGACATAGATATATGCGGCCCAAGCATCCCTACAAT 319 Query 418 GTTAGGACTTGAAGGGCAAGAGATTCACCAGAGTAACCTT-GGATGGTCTCCGGTTTATG 476 | |||| || ||||||| |||||| ||||||| || ||| |||||||| |||||||||| Sbjct 320 GCTAGGCCTCCAAGGGCACGAGATTTACCAGAGCAA-CTTGGGATGGTCACCGGTTTATG 378 Query 477 TGGAAGACAACCTTGGTGTCATGTCCATAGGTTTCAT-G--C-TCCCT---AACTCTGAT 529 | ||||||||||| | ||||||||||||||||||||| | | |||| || |||||| Sbjct 379 TTGAAGACAACCTCGCTGTCATGTCCATAGGTTTCATGGTTCACCCCTCCGAA-TCTGAT 437 Query 530 GAAG-CTGTGATCTGGAGAGGGCCACGCAAGAATGGTCTCATCAAGCAGTTCTTAAAAGA 588 | || ||| ||||||||||| ||||||||||| ||||||||||| ||||| |||||||| Sbjct 438 G-AGCCTGCCATCTGGAGAGGTCCACGCAAGAACGGTCTCATCAAACAGTTTTTAAAAGA 496 Query 589 CGTCTACTGGGGAGAGATTGATTACCTTGTTGTTGATGCCCCACCAGGAACCTCAGATGA 648 ||| |||||||||||||| |||| |||||| |||||| ||||||||||||||||||| || Sbjct 497 CGTTTACTGGGGAGAGATCGATTTCCTTGTGGTTGATTCCCCACCAGGAACCTCAGACGA 556 Query 649 ACACATCTCCATCGTCCAGTACCTT-CTACCCACGGGGATCGACGGTGCCATCATTGTCA 707 | ||||| |||||||||||| |||| | || |||||||||||||||||| |||||||||| Sbjct 557 AAACATCACCATCGTCCAGTCCCTTGC-ACACACGGGGATCGACGGTGCTATCATTGTCA 615 Query 708 CGACACCGCAGGAAGTCTCCTTGATTGATGTCAGAAAAGAAGTGAGCTTTTGCAAGAAAG 767 | || || || ||| |||||||||| ||||||||||||| ||| | ||||||||||||| Sbjct 616 CCACCCCTCAAGAAATCTCCTTGATAGATGTCAGAAAAGGAGTCAACTTTTGCAAGAAAA 675 Query 768 TTGGAGTCCCGGTGCTAGGAGTAGTAGAGAACATGAGTGGTTTATCTCAACCGTTGAAGG 827 |||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| || Sbjct 676 TTGGAGTCCCTGTGCTAGGAGTTGTAGAGAACATGAGCGGTTTATCTCAACCGTTGACGG 735 Query 828 ATGTCAAGTTCATGAAGCTGGCGACAGAGACCGGCTCCTCCATTAACGTGACTGAAGACG 887 || |||||||||||||||||| || || |||||||||||||| ||||||| ||||| Sbjct 736 ATATCAAGTTCATGAAGCTGGTAACTGAAACCGGCTCCTCCATCGACGTGACCCAAGACA 795 Query 888 TAATCGCTTGCTTAAGAAAAAACGCACCAGAGCTTCTCGACATCGTGGCTTGTAG-CGAA 946 | ||| ||||| ||||| | || || |||||||||||| | |||||||||| || | || Sbjct 796 TGATCTCTTGCATAAGAGATAATGCTCCAGAGCTTCTCAATGTCGTGGCTTGCAGTC-AA 854 Query 947 GTGTTTGACAGCAGCGGAGGCGGTGCAGAAAGAATGTGTCGGGAAATGGGAGTACCGTTT 1006 || |||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| Sbjct 855 GTTTTTGACAGCAGCGGAGGCGGTGCAGAGAGAATGTGTCAGGAAATGGGAGTGCCGTTT 914 Query 1007 CTTGGGAAAGTTCCTATGGATCCACAACTTTGCAAAGCAGCTGAACAAGGTAAGTCATGC 1066 ||||||||||||||| |||||||||| ||||||| |||||| || ||||||||||||||| Sbjct 915 CTTGGGAAAGTTCCTTTGGATCCACAGCTTTGCAGAGCAGCCGAGCAAGGTAAGTCATGC 974 Query 1067 TTTGAGGATAACAAGTGTT-TAATAAGCGCACCTGCGCTTAAAAGCATCATACAGAAAGT 1125 ||||||||||||||||||| | || | ||||| |||||||| ||||||||| | ||||| Sbjct 975 TTTGAGGATAACAAGTGTTCTGTTA-GTGCACCCGCGCTTAAGAGCATCATAGAAAAAGT 1033 Query 1126 CGT 1128 ||| Sbjct 1034 CGT 1036 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51809044203 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5