BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50970.1
Length=1742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495163 jgi|Araly1|495163|fgenesh2_kg.8__979__AT5G50970.1 2564 0.0
> Ahg495163 jgi|Araly1|495163|fgenesh2_kg.8__979__AT5G50970.1
Length=1726
Score = 2564 bits (1388), Expect = 0.0
Identities = 1621/1732 (94%), Gaps = 21/1732 (1%)
Strand=Plus/Plus
Query 6 AAGAACCAATCCACCCACAAGTGTTGGAATTAGAAATGAGCGAGCTTTGTACGAATCCTA 65
|||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||
Sbjct 1 AAGAACCAATCCACCCACAAGTTTTGGAATCAGAAATGAGTGAGCTTTGTACGAACCCTA 60
Query 66 AGAAACCCAAACTCAaagaagaagatgaagaagaagaagctaatgtctcttgcagagaag 125
|||||||||||||||||||||| || ||||| |||||||||||||||||||||| |||||
Sbjct 61 AGAAACCCAAACTCAAAGAAGATGACGAAGACGAAGAAGCTAATGTCTCTTGCAAAGAAG 120
Query 126 agcaagaagaagTTCTTGTTGCTTTAGTAGAGCACCGTTCTAATGAAATTGAGCGTCTCA 185
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 121 AGCAAGAAGAAGTTCTTGTTGCTTTAGTAGAGCATCGTTCTAATGAAATTGAGCGTCTTA 180
Query 186 ACAATCACATATCTAATTACCAAACCAAGCTTATTGAAGCAGAGAGAAGTTTGCAGAATT 245
|| ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||
Sbjct 181 ACCATCACATATCTAATTACCAAAACAAGCTTGTTGAAGCAGAAAGAAGTTTGCAGAATT 240
Query 246 CAAAAGCTAAGCTAGCTCAACTTCGTGGAGTTGCAGTTCCATCTATCAGTGGTGCAAAGA 305
||||||| ||| |||||||||||||||||||| ||||||||||||| | |||||||||
Sbjct 241 CAAAAGCCAAGTTAGCTCAACTTCGTGGAGTTTCAGTTCCATCTAT---TAGTGCAAAGA 297
Query 306 AAGATCATAAACCATTGAAGACT-TTGAGAAATGTGAATGTGAGTGAAGACTATGCATCT 364
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 298 AAGATAATAAACCATTGAAGACTCTT-AGAAATGTGAATGTGAGTGAAGACTATGCATCT 356
Query 365 CCATCACCTAGCAAGACTCTAAGGCCCTCTGATAGCTCTGATCATCCTAGAAGTAGTTGT 424
|||||||||||||||||||||| || | |||||||||||||||||| ||||||||||||
Sbjct 357 CCATCACCTAGCAAGACTCTAAAACCTTGTGATAGCTCTGATCATCCCAGAAGTAGTTGT 416
Query 425 GGTAGTAGTGTCTCCAAGGCTAAGACTGTTGTTGTGAAGCAAAAATCTGAAACATCTCGT 484
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGTAGTAGTGTATCCAAGGCTAAGACTGTTGTTGTGAAGCAAAAATCTGAAACATCTCGT 476
Query 485 GATAGTCCTAATGTTAAAGATAGAGGGATCAAGAGGAAATTTGAGCAAAAAGAGCATAAA 544
||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||
Sbjct 477 GATAGTCCTAATGTTAAAGATAGAGGGATGAAGAGGAAATGTGAGCAAAAGGAGCATAAA 536
Query 545 GAGTTGATTCGGTTGATAGCGAGAAACTCTTCACCAACTACAATCAAGTGTCATACTAGT 604
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 537 GAGTTGATTCGGTTGATAGCTAGAAACTCTTCACCAACTACAATTAAGTGTCATACTAGC 596
Query 605 AACCAAATCTCTAGTCAGCATAAGAGGAAATTAAGAAGCTTGATATTGTGTCCTGTAAAT 664
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 597 AACCAAATCTCTAGTCAGCATAAGAGGAAATTAAGAAGCTTGATTTTGTGTCCTGTAAAT 656
Query 665 GAGCAGTTGTTTGCAACAAGTTCTTTGGATGGCATGGTTAGTTTATGGCAACTGCAGCCT 724
|||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct 657 GAGCAGTTGTTTGCAACAAGTTCTCTGGATGGAATGGTCAGTTTATGGCAACTGCAGCCT 716
Query 725 GGAAGATTGGTTGCATCATTGCTTAGTACTACCGACTGTTTATCTCGAAAACAAAGAAGA 784
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGAAGATTGGCTGCATCATTGCTTAGTACTACCGACTGTTTATCTCGAAAACAAAGAAGA 776
Query 785 TGGGCAGAAGATATGGCGTGGCACCCATCTGGGAACACTCTTTTCTCTGTGTACACTGCA 844
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 777 TGGGCAGAAGATATGGCATGGCACCCATCTGGGAACACCCTTTTCTCTGTATACACTGCA 836
Query 845 GACGATGGGGATTCTCAGATATCGATCCTAAATCTGAACAAGACACGCGAGGTTACTTTC 904
||||||||||||||||||||||||||| |||| || ||||||||||| | ||||||||||
Sbjct 837 GACGATGGGGATTCTCAGATATCGATCTTAAACCTTAACAAGACACGTGGGGTTACTTTC 896
Query 905 CTGGAAAATAAACCTCACGTAAAAGGGATTATCAACAACATAAAGTTCATGCCTTGGGAA 964
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 897 CTGGAGAATAAACCTCACGTAAAAGGGATTATCAACAACATTAAGTTCATGCCTTGGGAA 956
Query 965 AATACATGCTTTGTCACAGGGGGAAGTGATCACGCTGTTGTACTATGGAACGAGAGTGAT 1024
| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 957 AGTACCTGCTTTGTCACTGGGGGAAGTGATCACGCTGTTGTTCTATGGAACGAGAGTGAT 1016
Query 1025 GATGAAGAAAACAAATGGAAGTCGAAACCTTTACACAGAAATCTACATTCAGCTGCTGTA 1084
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 1017 GATGAAGAAAACAAATGGAAGTCAAAAACTTTACACAGGAATCTACATTCAGCTGCTGTA 1076
Query 1085 ATGGGAGTGGATGGGATGAAAAACAAGAATGTTATTTTATCAGTAGGAGCAGACAAGAGA 1144
||||||||||||||||||| ||||||||||||| | |||||||| ||||| |||||||||
Sbjct 1077 ATGGGAGTGGATGGGATGAGAAACAAGAATGTTGTCTTATCAGTTGGAGCGGACAAGAGA 1136
Query 1145 ATATACGGATTTGATGTTCAAGTTGGTAGAGCAGACTACAAGCATCAAATAGACTATAAA 1204
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1137 ATATACGGGTTTGATATTCAAGTTGGTAGAGCAGACTACAAGCATCAAATAGACTATAGA 1196
Query 1205 TGCATGAGCGTCCTCGCTAATCCTTGTGACTTCAATCTTTTCATGGTTCAATCCGGGGAA 1264
||||||||| | || ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1197 TGCATGAGCATTCTTGCTAATCCTTGTGACTTCAATCTGTTCATGGTTCAATCTGGGGAA 1256
Query 1265 CCCGAGAAACAGCTTCGACTGTTTGATATCAGGTTAAGAAAAACCGAACTCCATTCGTTT 1324
|||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||
Sbjct 1257 CCCGAGAAACAGCTTCGACTGTTTGATATCAGATTAAGGAAAACTGAACTGCATTCGTTT 1316
Query 1325 GGGTGGAAGCAAGACAGCAGTGAATCACAATCAGCTCTAATAAACCAGTCTTGGTCTCCT 1384
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1317 GGATGGAAGCAAGACAGCAGTGAATCACAATCAGCTTTAATAAACCAGTCTTGGTCTCCT 1376
Query 1385 GATGGTTTATACATCACCTCTGGCTCAGTTGATCCGGTGATCCATGTTTTTGACATCAGG 1444
|||||||||||||| ||||| |||||||| || || || |||||||||||||||||||||
Sbjct 1377 GATGGTTTATACATAACCTCAGGCTCAGTAGACCCAGTCATCCATGTTTTTGACATCAGG 1436
Query 1445 TACAATGCTCGTAAGCCGACACAATCAATAAAAGCGCATCAGAAACGAGTGTTTAAAGCG 1504
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1437 TACAATGCTCGGAAGCCAACACAATCGATAAAAGCGCATCAGAAACGAGTGTTTAAAGCG 1496
Query 1505 GAATGGCATTACTCTCAACCACTTCTCATCTCCATATCTTCTGATCTCAACATTGGTCTG 1564
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1497 GAATGGCATTACTCTCAACCACTTCTCATCTCAATATCTTCTGATCTCAACATTGGTCTA 1556
Query 1565 CACAAGATCTCATGAAACTTTTGAAGCTCTCACATGTCTTTGTTCCTCATTTCTTATTAT 1624
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1557 CACAAGATCTCATGAAACTTTTGAAGTTCTCA--TGTCTTTGTTCCTCATTTCTTATTAT 1614
Query 1625 CTGA----G-G-ATACAGGTTCAGGTGGCG-AATATTTATCAGCCATCATACCAATTCTT 1677
|||| | | ||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 1615 CTGAATCTGAGGATACAGGTTCAGGTGGCTTAATATTTATCAGTCATCGTACCAATTCTT 1674
Query 1678 AGTTTTAGGTATAAACATCATTCCCAT--G--T---ATTAAACTCTCAATTT 1722
|||| |||| ||||||||| ||||||| | | ||||||||||||||||
Sbjct 1675 AGTTCTAGGCATAAACATCGTTCCCATATGGATTGTATTAAACTCTCAATTT 1726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65362860420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5