BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G50990.1
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331488 jgi|Araly1|331488|fgenesh1_pm.C_scaffold_8000831 2488 0.0
> Ahg331488 jgi|Araly1|331488|fgenesh1_pm.C_scaffold_8000831
Length=1605
Score = 2488 bits (1347), Expect = 0.0
Identities = 1522/1608 (95%), Gaps = 6/1608 (0%)
Strand=Plus/Plus
Query 35 ATGCAGAGAATCTCCATTAATGTCTCCGGAATCAGAAGATTCTGCATCACCTCTCTTTCG 94
|||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 1 ATGCTGAGAATCTCCATTAATGTCTCCGGAGTCAGAAGATTCTGCGTCACCTCTCTCTCG 60
Query 95 TCATC-TTCCGCTTCAAACCTCACCGATCATGGGATGTTGAAACAAGTTCTTGAATCATG 153
||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 61 TCA-CTTTCCGCTTCAAACCTCACCGATCATCGGATATTGAAACAAGTTCTTGAATCATG 119
Query 154 CAAAGCTCCTTCAAATTCTAAATGTGTTCTTCAAGCACATGCTCAGATCTTTAAACTTGG 213
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 CAAAGCTCCTTCAAATTCTAAATGTGTTCTTCAAGCACATGCTCATATCTTTAAACTTGG 179
Query 214 GTACGGAACATATCCATCTCTTCTTGTCTCCACAGTTGCAGCTTACAGACGCTGCAACCG 273
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 GTACGGAACGTATCCATCTCTTCTTGTCTCCACAGTTGCAGCTTATAGACGCTGCAACCG 239
Query 274 TTCATATCTTGCTCGACGGCTTCTTCTTTGGTTCCTCTCTTTGTCTCCTGGTGTCTGTAA 333
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 TTCATATCTTGCTCGACGGCTTCTTCTTTGGTTCCTCTCTCTGTCTCCTGGTGTCTGTAA 299
Query 334 CATAAACCTAATCATTGAGAGTCTTATGAAAATTGGAGAGTCTGGTTTGGCCAAGAAGGT 393
|| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 300 CACAAACCTAATCATTGAGAGTCTTGTGAAAATTGGAGAGTCCGGTTTGGCCAAGAAGGT 359
Query 394 ACTTCGTAATGCGAGTGATCAGAATGTGATCACCTGGAACTTGATGATTGGTGGTTATGT 453
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 TCTTCGTAACGCGAGTGATCAGAATGTGATCACCTGGAATTTGATGATTGGTGGTTATGT 419
Query 454 TAGAAATGTCCAGTATGAAGAAGCTCTGAAAGCTCTTAAGAATATGCTTAGTTTTACTGA 513
||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| | ||
Sbjct 420 TAGAAATGTTCAGTATGAAGAAGCTTTGAAAACTCTTAAGAATATGCTTAGTTTTTCGGA 479
Query 514 TATTAAACCGAATAAGTTCAGTTTTGCTTCCTCTTTAGCTGCTTGTGCCCGTCTTGGAGA 573
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 TTTTAAACCGAATAAGTTCAGTTTCGCTTCCTCTTTAGCTGCTTGTGCCCGTCTTGGAGA 539
Query 574 TCTGCACCATGCGAAGTGGGTGCACTCTCTGATGATTGATAG-TGGGATTGAGCTTAATG 632
||| |||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||
Sbjct 540 TCTACACCATGCGAAGTGGGTGCATTCTCTGATGATTGAT-GCTGGGATTGAACTTAATG 598
Query 633 CAATATTGTCTTCTGCACTTGTTGATGTGTATGCAAAGTGTGGAGATATAGGAACTTCGA 692
|||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 599 CAATATTGTCTTCTGCACTTGTCGATGTGTATGCAAAGTGCGGAGATATAGAAACTTCGA 658
Query 693 GGGAGGTTTTCTATAGTGTTAAACGGAACGATGTGTCGATTTGGAACGCGATGATCACGG 752
||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 GGGAGGTATTCTGTAGTGTTAAACGGAACGATGTGTCTATTTGGAACGCGATGATCACGG 718
Query 753 GTTTTGCTACTCATGGGCTAGCCACAGAAGCAATCAGAGTGTTTTCAGAGATGGAAGCGG 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTTTTGCTACTCATGGGCTAGCCACAGAAGCAATCAGAGTGTTTTCAGAGATGGAAGCGG 778
Query 813 AACATGTTTCACCAGATTCTATAACATTCCTCGGGCTTTTAACAACGTGTAGCCATTGCG 872
|||||||||||||||| ||||||||||| |||||||||||||| | ||||||||||| |
Sbjct 779 AACATGTTTCACCAGACTCTATAACATTTCTCGGGCTTTTAACGGCTTGTAGCCATTGTG 838
Query 873 GTTTGCTTGAAGAAGGGAAAGAGTACTTTGGTCTAATGAGTC-GCCGCTTTTCTATACAG 931
|||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||
Sbjct 839 GTTTGCTTGAAGAAGGGAAAGAGTACTTTGGTCTAATGAGTCAG-CGGTTTTCAATACAG 897
Query 932 CCAAAGTTAGAGCACTATGGTGCTATGGTTGATCTGCTAGGCCGAGCAGGAAGAGTAAAA 991
|||||||||||||| || || |||||||||||||||||||||||||||||| | ||||||
Sbjct 898 CCAAAGTTAGAGCATTACGGGGCTATGGTTGATCTGCTAGGCCGAGCAGGACGGGTAAAA 957
Query 992 GAAGCGTACGAGTTGATCGAATCAATGCCGATAGAGCCAGATGTAGTGATATGGAGGTCT 1051
|||||||| |||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 958 GAAGCGTATGAGTTGATAGAATCAATGCCGATTGAGCCAGATGTGGTCATATGGAGGTCT 1017
Query 1052 CTTCTTAGTTCCTCTAGAACTTATAAGAATCCTGAGCTAGGAGAAATCGCGATACAGAAT 1111
||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||
Sbjct 1018 CTTCTTAGTTCTTCTAGAACTTTTAAGAATCCCGAGCTAGGAGAAATTGCGATACAGAAT 1077
Query 1112 CTTTCAAAAGCAAAGAGCGGAGACTATGTGTTGCTTTCGAACATATATAGCTCCACGAAG 1171
|||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1078 CTTTCAAAGGCAAAGAGCGGAGACTATGTGTTGCTTTCGAACATCTATAGCACCACGAAG 1137
Query 1172 AAATGGGAGAGCGCTCAAAAGGTCAGAGAGTTGATGAGTAAGGAAGGAATCCGTAAAGCG 1231
||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 1138 AAATGGGAGAGTGCTCAAAAGGTTAGAGAATTGATGACTAAGGAAGGAATCCGTAAAGCA 1197
Query 1232 AAAGGAAAGAGTTGGTTGGAATTTGGAGGGATGATACATCGGTTTAAGGCAGGAGATACA 1291
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1198 AAAGGAAAGAGTTGGGTGGAATTTGGAGGGATGATACATCGGTTTAAGGCAGGGGATACA 1257
Query 1292 TCTCATATAGAAACAAAAGCTATATACAAAGTATTAGAAGGTTTGATACAGAAAACTAAG 1351
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1258 TCTCATATAGAAACAAAGGCTATATACAAAGTACTAGAAGGTTTGATACAGAAAACTAAG 1317
Query 1352 TCTCAAGGATTTGTGTCTGACACGGATTTGGTGTTGATGGATGTTTCTGAAGAAGAGAAA 1411
||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1318 TCTGAAGGATTTGTGTCTGACACGGATTTGGTGTTAATGGATGTCTCTGAAGAAGAGAAA 1377
Query 1412 GAAGAGAACTTAAATTATCACAGCGAAAAGCTCGCGTTGGCGTATGTGATATTGAAGAGT 1471
|| ||||| || ||||| |||||||||||||| |||||||| |||||||| |||||||||
Sbjct 1378 GAGGAGAATTTGAATTACCACAGCGAAAAGCTTGCGTTGGCATATGTGATCTTGAAGAGT 1437
Query 1472 AGTCCAGGAACAGAAATTAGAATTCAGAAGAATATACGGATGTGTAGTGATTGCCACAAC 1531
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AGTCCAGGAACAGAAATTAAAATTCAGAAGAATATACGGATGTGTAGTGATTGCCACAAC 1497
Query 1532 TGGATAAAAGCAGTGTCGAAGTTGTTGAATAGAGTGATTATAATGCGGGATCGGATACGG 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TGGATAAAAGCAGTGTCGAAGTTGTTGAATAGAGTGATTATAATGCGGGATCGGATACGG 1557
Query 1592 TTTCATAGGTTTGAAGATGGGTTGTGTTCTTGCAGAGATTATTGGTAA 1639
|||||||| ||||||||||||||||||||||||| |||||| ||||||
Sbjct 1558 TTTCATAGATTTGAAGATGGGTTGTGTTCTTGCAAAGATTACTGGTAA 1605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61439565185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5